Tag e_coli [155 articles]

Recent papers classified by the tag e_coli.

	Self-Organization of the <italic>Escherichia coli</italic> Chemotaxis Network Imaged with Super-Resolution Light Microscopy [My Copy] PLoS Biol, Vol. 7, No. 6. (23 June 2009), e1000137. by Derek Greenfield, Ann L. Mcevoy, Hari Shroff, et al.Gavin E. Crooks, Ned S. Wingreen, Eric Betzig, Jan Liphardt posted to signaling protein_interactions e_coli chemotaxis bacteria by jjray on 2009-07-01 17:10:58 as along with 1 person dbikard
	Functional Characterization in Vitro of All Two-component Signal Transduction Systems from Escherichia coli [My Copy] J. Biol. Chem., Vol. 280, No. 2. (14 January 2005), pp. 1448-1456. by Kaneyoshi Yamamoto, Kiyo Hirao, Taku Oshima, Hirofumi Aiba, Ryutaro Utsumi, Akira Ishihama posted to two-component_system phopq phobr e_coli crosstalk bacteria by jjray on 2009-06-15 18:47:26 as
	Chaperonin overexpression promotes genetic variation and enzyme evolution [My Copy] Nature, Vol. 459, No. 7247. (4 June 2009), pp. 668-673. by Nobuhiko Tokuriki, Dan S. Tawfik posted to stability protein_folding evolution e_coli bacteria by jjray on 2009-06-03 21:33:24 as along with 1 person zwang
	Mutual Information between Input and Output Trajectories of Biochemical Networks [My Copy] Physical Review Letters, Vol. 102, No. 21. (2009), 218101. by Filipe Tostevin, Pieter R. ten Wolde posted to signaling network information e_coli chemotaxis biochemistry bacteria by jjray on 2009-05-29 20:33:51 as
	Differential Affinity and Catalytic Activity of CheZ in <italic>E. coli</italic> Chemotaxis [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (8 May 2009), e1000378. by Siebe B. van Albada, Pieter R. ten Wolde edited by Christopher Rao posted to two-component_system signaling phosphorylation e_coli chemotaxis bacteria by jjray on 2009-05-29 16:44:25 as
	Synthetic Gene Networks That Count [My Copy] Science, Vol. 324, No. 5931. (29 May 2009), pp. 1199-1202. by Ari E. Friedland, Timothy K. Lu, Xiao Wang, David Shi, George Church, James J. Collins posted to synthetic_biology mathematical_model gene_network e_coli bacteria by jjray on 2009-05-29 16:01:17 as along with 11 people myzhang reyez austin alexknight twatanab kshundyak phoenixzxl sen_cheng leliavski jbhiatt dswan
	Stochasticity in Protein Levels Drives Colinearity of Gene Order in Metabolic Operons of <italic>Escherichia coli</italic> [My Copy] PLoS Biol, Vol. 7, No. 5. (26 May 2009), e1000115. by Károly Kovács, Laurence D. Hurst, Balázs Papp posted to stochastic metabolism gene_order e_coli chromosome_organization bacteria by jjray on 2009-05-27 17:52:56 as along with 5 people emptyhb trfield dipenps pinney kentsis
	A coordinated network of transporters with overlapping specificities provides a robust survival strategy [My Copy] Proceedings of the National Academy of Sciences (18 May 2009) by Nir Tal, Shimon Schuldiner posted to robustness e_coli crosstalk bacteria antibiotics by jjray on 2009-05-22 23:20:11 as along with 2 people viktor21614 trfield
	Probing the Roles of the Two Different Dimers Mediated by the Receiver Domain of the Response Regulator PhoB [My Copy] Journal of Molecular Biology (14 April 2009) by Timothy R. Mack, Rong Gao, Ann M. Stock posted to two-component_system protein_binding phosphorylation phobr gene_regulation e_coli bacteria by jjray on 2009-05-18 20:11:39 as
	Synthesis of orthogonal transcription-translation networks [My Copy] Proceedings of the National Academy of Sciences (14 May 2009) by Wenlin An, Jason W. Chin posted to translation synthetic_biology network feedforward e_coli bacteria by jjray on 2009-05-15 17:37:24 as
	On finding minimal absent words [My Copy] BMC Bioinformatics, Vol. 10 (08 May 2009), 137. by Armando, Joao M. O. S. Rodrigues posted to text_mining electrostatics e_coli dna by lptolik on 2009-05-15 10:09:50 as along with 1 person and 1 group stajich Mycology
	Predictions from a stochastic polymer model for the MinDE dynamics in E.coli [My Copy] (13 May 2009) by Peter Borowski, Eric N. Cytrynbaum posted to stochastic spatial polymer oscillation e_coli biophysics bacteria by jjray on 2009-05-14 17:10:34 as
	Stochastic Analysis of the SOS Response in Escherichia coli [My Copy] PLoS ONE, Vol. 4, No. 5. (8 May 2009), e5363. by Yishai Shimoni, Shoshy Altuvia, Hanah Margalit, Ofer Biham posted to stochastic network mixed_feedback mathematical_model gillespie_algorithm gene_regulation feedback e_coli bacteria by jjray on 2009-05-13 21:51:38 as
	Mutual information between in- and output trajectories of biochemical networks [My Copy] (4 Jan 2009) by Filipe Tostevin, Pieter posted to signaling network mutual_information information e_coli biochemistry bacteria by jjray on 2009-05-07 16:22:56 as along with 1 person akraemer
	Modeling DNA-binding of Escherichia coli sigma70 exhibits a characteristic energy landscape around strong promoters [My Copy] Nucl. Acids Res. (16 October 2007), gkm720. by Johanna Weindl, Pavol Hanus, Zaher Dawy, Juergen Zech, Joachim Hagenauer, Jakob C. Mueller posted to sigma_factor promoter gene_regulation energy e_coli dna bacteria by jjray on 2009-04-28 19:05:32 as along with 3 people and 1 group operon dpollard maximilianh EisenLab
	Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of <I>Escherichia coli</I>? [My Copy] BioEssays, Vol. 17, No. 11. (1995), pp. 987-997. by Purnananda Guptasarma posted to transcription stochastic e_coli copy_number bacteria by jjray on 2009-04-27 23:17:26 as
	Coding-Sequence Determinants of Gene Expression in Escherichia coli [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 255-258. by Grzegorz Kudla, Andrew W. Murray, David Tollervey, Joshua B. Plotkin posted to transcription mutation e_coli by absterga on 2009-04-12 19:04:46 as along with 28 people and 1 group samgj dswan bpcusack emptyhb sameersoi dpsuslo8 anwazo Vincent_Rouilly kintoki erel10 michaelbarton fenghezi VGreiff ramanuja austin twatanab coela polivares rpatward lizbiogen jdbowes operon jasontsai jbhiatt jjray kshundyak zwang friendpine BergmanLab
	Phosphorylation of nitrogen regulator I (NRI) of Escherichia coli. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 85, No. 23. (December 1988), pp. 8919-8923. by V. Weiss, B. Magasanik posted to two-component_system signaling phosphorylation e_coli bacteria by jjray on 2009-03-18 20:26:17 as
	DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli [My Copy] Genome Biology, Vol. 10 (06 March 2009), R27. by Karen, Kathleen Marchal posted to systems_biology regulatory_network modularity e_coli complexity by biomcgary on 2009-03-17 16:57:50 as along with 4 people druvus natstreet tvdbulck dolchan
	Metabolic switching in the sugar phosphotransferase system of Escherichia coli. [My Copy] Biophys J, Vol. 85, No. 2. (August 2003), pp. 744-754. by M. Thattai, B. I. Shraiman posted to metabolism mathematical_model e_coli bistability bacteria by jjray on 2009-03-03 20:51:47 as along with 1 person Norlins
	Multistability in the lactose utilization network of Escherichia coli. [My Copy] Nature, Vol. 427, No. 6976. (19 February 2004), pp. 737-740. by E. M. Ozbudak, M. Thattai, H. N. Lim, B. I. Shraiman, A. Van Oudenaarden posted to network gene_regulation e_coli bistability bacteria by jjray on 2009-03-03 17:13:28 as along with 6 people rklancer monod Norlins ner25 madhadron jporternj
	Administration of Pediococcus acidilactici or Saccharomyces cerevisiae boulardii modulates development of porcine mucosal immunity and reduces intestinal bacterial translocation after Escherichia coli challenge. [My Copy] Journal of animal science, Vol. 87, No. 3. (March 2009), pp. 922-934. by M. Lessard, M. Dupuis, N. Gagnon, et al.E. Nadeau, J. J. Matte, J. Goulet, J. M. Fairbrother posted to probiotics e_coli bacterial_infections by HEIRS to the group HEIRS Probiotics/Prebiotics on 2009-03-01 14:20:47 as along with 4 groups HEIRS Inflammatory Bowel Disease, Colititis, and IBS HEIRS - Environmental Illness Research HEIRS Cellular Biology HEIRS Bacteriology
	Characterization of the Escherichia coli araFGH and araJ promoters [My Copy] Journal of Molecular Biology, Vol. 215, No. 4. (20 October 1990), pp. 497-510. by W. Hendrickson, C. Stoner, R. Schleif posted to gene_regulation e_coli bacteria by jjray on 2009-02-26 18:05:06 as
	In vivo induction kinetics of the arabinose promoters in Escherichia coli. [My Copy] Journal of bacteriology, Vol. 177, No. 12. (June 1995), pp. 3438-3442. by C. M. Johnson, R. F. Schleif posted to kinetics gene_regulation feedback e_coli bacteria by jjray on 2009-02-26 18:04:52 as
	From scratch to value: engineering Escherichia coli wild type cells to the production of l -phenylalanine and other fine chemicals derived from chorismate [My Copy] Applied Microbiology and Biotechnology, Vol. 75, No. 4. (1 June 2007), pp. 739-749. by Georg Sprenger posted to metabolism feedback e_coli bacteria by jjray on 2009-02-19 23:29:17 as
	A reexamination of information theory-based methods for DNA-binding site identification [My Copy] BMC Bioinformatics, Vol. 10 (11 February 2009), 57. by Ivan Erill, Michael C. O'Neill posted to genetic_regulatory_networks electrostatics e_coli by lptolik on 2009-02-19 09:38:56 as along with 1 person maximilianh
	Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway [My Copy] Mol Syst Biol, Vol. 5 (20 January 2009) by David Kentner, Victor Sourjik posted to signaling protein_binding e_coli chemotaxis bacteria by jjray on 2009-02-18 17:46:08 as along with 1 person brianb
	Construction of a genetic toggle switch in Escherichia coli. [My Copy] Nature, Vol. 403, No. 6767. (20 January 2000), pp. 339-342. by T. S. Gardner, C. R. Cantor, J. J. Collins posted to synthetic_biology e_coli bio-engineering by Borelli on 2009-02-17 16:32:43 as along with 10 people sjayanthi marcio rdowell reidw ClaireFB lenov rklancer satsumakenji tvdbulck austin
	A kinetic model of oxygen regulation of cytochrome production in Escherichia coli. [My Copy] Journal of theoretical biology, Vol. 242, No. 3. (7 October 2006), pp. 547-563. by B. E. Peercy, S. J. Cox, S. Shalel-Levanon, K. Y. San, G. Bennett posted to two-component_system mathematical_model hysteresis feedback e_coli bacteria by jjray on 2009-02-12 21:59:47 as
	Organised Genome Dynamics in the <italic>Escherichia coli</italic> Species Results in Highly Diverse Adaptive Paths [My Copy] PLoS Genet, Vol. 5, No. 1. (23 January 2009), e1000344. by Marie Touchon, Claire Hoede, Olivier Tenaillon, et al.Valérie Barbe, Simon Baeriswyl, Philippe Bidet, Edouard Bingen, Stéphane Bonacorsi, Christiane Bouchier, Odile Bouvet, Alexandra Calteau, Hélène Chiapello, Olivier Clermont, Stéphane Cruveiller, Antoine Danchin, Médéric Diard, Carole Dossat, Meriem E. Karoui, Eric Frapy, Louis Garry, Jean M. Ghigo, Anne M. Gilles, James Johnson, Chantal Le Bouguénec, Mathilde Lescat, Sophie Mangenot, Vanessa Martinez-Jéhanne, Ivan Matic, Xavier Nassif, Sophie Oztas, Marie A. Petit, Christophe Pichon, Zoé Rouy, Claude S. Ruf, Dominique Schneider, Jérôme Tourret, Benoit Vacherie, David Vallenet, Claudine Médigue, Eduardo P. Rocha, Erick Denamur posted to phylogeny genome genetics evolution e_coli bacteria by jjray on 2009-02-03 17:34:53 as along with 1 person and 1 group djkt iSEEM
	From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli. [My Copy] Bioessays, Vol. 20, No. 5. (May 1998), pp. 433-440. by D. Thieffry, A. M. Huerta, E. Pérez-Rueda, J. Collado-Vides posted to transcriptional_regulation network gene_regulation feedback e_coli bacteria by jjray on 2009-01-26 20:46:03 as along with 2 people stk lmichan
	Amplification of the tryptophan operon gene in Escherichia coli chromosome to increase l-tryptophan biosynthesis [My Copy] Applied Microbiology and Biotechnology, Vol. 40, No. 2. (1 November 1993), pp. 301-305. by Err-Cheng Chan, Hsiu-Lan Tsai, Shih-Lin Chen, Due-Gang Mou posted to operon metabolism gene_regulation e_coli bacteria by jjray on 2009-01-20 22:15:30 as along with 1 person dbikard
	Diverse two-dimensional input functions control bacterial sugar genes [My Copy] Molecular cell, Vol. 29, No. 6. (28 March 2008), pp. 786-792. by S. Kaplan, A. Bren, A. Zaslaver, E. Dekel, U. Alon posted to transcription_regulation transcription regulation hill_function e_coli dor by siebert on 2009-01-20 15:26:00 as along with 1 person kentsis
	RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria. [My Copy] RNA (New York, N.Y.), Vol. 13, No. 8. (August 2007), pp. 1141-1154. by C. Yanofsky posted to review metabolism e_coli bacteria bacillus_subtilis by jjray on 2009-01-07 20:59:35 as along with 1 person stk
	Barcodes for genomes and applications [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Fengfeng Zhou, Victor Olman, Ying Xu posted to electrostatics e_coli by lptolik on 2009-01-07 17:36:12 as along with 6 people friendpine inquil nuin taguchi druvus jmeppley
	Genetic regulatory mechanisms in the synthesis of proteins. [My Copy] J Mol Biol, Vol. 3 (June 1961), pp. 318-356. by F. JACOB, J. MONOD posted to gene_regulation feedback e_coli bacteria by jjray on 2009-01-06 18:15:57 as along with 2 people nikkiwithers tkmaia
	Comparison of rheumatological and gastrointestinal symptoms after infection with Campylobacter jejuni/coli and enterotoxigenic Escherichia coli [My Copy] Ann Rheum Dis, Vol. 61, No. 5. (1 May 2002), pp. 448-452. by H. Locht, K. A. Krogfelt posted to enterotoxin e_coli campylobacter_jejuni by HEIRS to the group HEIRS Bone Health and Disease on 2009-01-01 18:05:48 as along with 5 groups HEIRS Inflammatory Bowel Disease, Colititis, and IBS HEIRS Immunology and Autoimmune Diseases HEIRS - Environmental Illness Research HEIRS Cellular Biology HEIRS Bacteriology
	The regulation of bacterial transcription initiation. [My Copy] Nat Rev Microbiol, Vol. 2, No. 1. (January 2004), pp. 57-65. by D. F. Browning, S. J. Busby posted to transcription promoter mode-of-control gene_regulation e_coli bacteria by jjray on 2008-12-18 20:36:32 as along with 5 people and 1 group mirkocortese monod jstajic nickluscombe dquest EBI-regulation
	Invariance of the Nucleoside Triphosphate Pools of Escherichia coli with Growth Rate [My Copy] J. Biol. Chem., Vol. 275, No. 6. (11 February 2000), pp. 3931-3935. by Carsten Petersen, Lisbeth B. Moller posted to growth_rate e_coli bacteria atp by jjray on 2008-12-18 17:45:44 as along with 1 person westoll
	Bacterial DNA supercoiling and [ATP]/[ADP] ratio: changes associated with salt shock. [My Copy] Journal of bacteriology, Vol. 173, No. 12. (June 1991), pp. 3914-3917. by L. S. Hsieh, J. Rouviere-Yaniv, K. Drlica posted to e_coli bacteria atp by jjray on 2008-12-18 17:31:49 as
	Host-bacteria interaction in inflammatory bowel disease [My Copy] Br Med Bull, Vol. 88, No. 1. (1 December 2008), pp. 95-113. by Paul Knight, Barry J. Campbell, Jonathan M. Rhodes posted to ibd e_coli bacteria by HEIRS to the group HEIRS Inflammatory Bowel Disease, Colititis, and IBS on 2008-12-13 17:41:20 as along with 2 groups HEIRS - Environmental Illness Research HEIRS Bacteriology
	Repression of Escherichia coli PhoP-PhoQ signaling by acetate reveals a regulatory role for acetyl coenzyme A. [My Copy] Journal of bacteriology, Vol. 185, No. 8. (April 2003), pp. 2563-2570. by J. A. Lesley, C. D. Waldburger posted to two-component_system signaling phopq e_coli bacteria by jjray on 2008-12-08 18:31:48 as along with 1 person Sjitprasutwit
	Signal transduction cascade between EvgA/EvgS and PhoP/PhoQ two-component systems of Escherichia coli. [My Copy] Journal of bacteriology, Vol. 186, No. 10. (May 2004), pp. 3006-3014. by Y. Eguchi, T. Okada, S. Minagawa, et al.T. Oshima, H. Mori, K. Yamamoto, A. Ishihama, R. Utsumi posted to two-component_system signaling phopq e_coli crosstalk bacteria by jjray on 2008-12-08 18:29:12 as
	Structural and mutational analysis of the PhoQ histidine kinase catalytic domain. Insight into the reaction mechanism. [My Copy] The Journal of biological chemistry, Vol. 276, No. 44. (2 November 2001), pp. 41182-41190. by A. Marina, C. Mott, A. Auyzenberg, W. A. Hendrickson, C. D. Waldburger posted to two-component_system signaling phopq mechanism e_coli biochemistry bacteria by jjray on 2008-12-08 17:48:21 as
	Mutational analysis of the Escherichia coli PhoQ sensor kinase: differences with the Salmonella enterica serovar Typhimurium PhoQ protein and in the mechanism of Mg2+ and Ca2+ sensing. [My Copy] Journal of bacteriology, Vol. 184, No. 19. (October 2002), pp. 5468-5478. by A. G. Regelmann, J. A. Lesley, C. Mott, L. Stokes, C. D. Waldburger posted to two-component_system signaling salmonella phopq e_coli bacteria by jjray on 2008-12-08 17:43:02 as along with 1 person Sjitprasutwit
	Molecular mechanism for establishment of signal-dependent regulation in the PhoP/PhoQ system. [My Copy] The Journal of biological chemistry, Vol. 283, No. 24. (13 June 2008), pp. 16612-16621. by W. Kong, N. Weatherspoon, Y. Shi posted to two-component_system signaling phopq gene_regulation e_coli bacteria by jjray on 2008-12-08 17:41:44 as
	EchoLOCATION: an in silico analysis of the subcellular locations of Escherichia coli proteins and comparison with experimentally derived locations. [My Copy] Bioinformatics (Oxford, England) (16 November 2008) by Richard S P S. Horler, Andrew Butcher, Nikitas Papangelopoulos, Peter D D. Ashton, Gavin H H. Thomas posted to subcellular_location prediction e_coli by grahamc on 2008-11-20 22:37:32 as along with 1 person mstumpf
	High stimulus unmasks positive feedback in an autoregulated bacterial signaling circuit [My Copy] Proceedings of the National Academy of Sciences (5 November 2008) by Tim Miyashiro, Mark Goulian posted to two-component_system signaling positive_feedback mathematical_model gene_regulation feedback e_coli bacteria by jjray on 2008-11-06 15:42:52 as along with 2 people balicea erel10
	Sequence Space Coverage, Entropy of Genomes and the Potential to Detect Non-Human DNA in Human Samples [My Copy] BMC Genomics, Vol. 9 (30 October 2008), 509. by Zhandong Liu, Santosh S. Venkatesh, Carlo C. Maley posted to electrostatics e_coli dna arabidopsis by lptolik on 2008-11-05 11:01:19 as
	B1500, a small membrane protein, connects the two-component systems EvgS/EvgA and PhoQ/PhoP in Escherichia coli. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 47. (20 November 2007), pp. 18712-18717. by Y. Eguchi, J. Itou, M. Yamane, et al.R. Demizu, F. Yamato, A. Okada, H. Mori, A. Kato, R. Utsumi posted to two-component_system signaling phopq e_coli crosstalk bacteria by jjray on 2008-10-28 15:50:47 as

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