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Tag ecoli [259 articles]

Recent papers classified by the tag ecoli.
  • Construction of consecutive deletions of the Escherichia coli chromosome
    Mol Syst Biol, Vol. 3 (2007)
    by Jun-Ichi Kato, Masayuki Hashimoto
    posted to bacterial chromosome deletion ecoli by zwang on 2007-08-15 03:07:11 as *
  • Escherichia coli RNase P RNA: Substrate Ribose Modifications at G+1, but Not Nucleotide - 1/+73 Base Pairing, Affect the Transition State for Cleavage Chemistry
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by Simona Cuzic, Karin A Heidemann, Jens Wöhnert, Roland K Hartmann
    posted to ecoli mutation rna rnasep by zwang on 2008-05-05 14:16:50 as ****
  • Rapid selection of accessible and cleavable sites in RNA by Escherichia coli RNase P and random external guide sequences
    Proceedings of the National Academy of Sciences (8 February 2008), 0711977105.
    by Eirik W Lundblad, Gaoping Xiao, Jae-Hyeong Ko, Sidney Altman
    posted to disease ecoli rna rnasep selection sequence by zwang on 2008-02-17 10:56:28 as **** along with 1 person austin
  • Life without RNase P
    Nature, Vol. 453, No. 7191., pp. 120-123.
    by Lennart Randau, Imke Schröder, Dieter Söll
    posted to ecoli rnasep by zwang on 2008-05-05 14:15:41 as ***** along with 4 people and 2 groups kinestetika neils stajich austin microbiology_nijmegen Berkeley Mycology
  • Hierarchy and feedback in the evolution of the Escherichia coli transcription network
    PNAS, Vol. 104, No. 13. (27 March 2007), pp. 5516-5520.
    by Cosentino, P Jona, B Bassetti, H Isambert
    posted to ecoli evolution network transcription by zwang on 2007-03-30 08:33:29 as ** along with 3 people cjeans dquest jjray
  • An Immunological Determinant of RNase P Protein is Conserved between Escherichia coli and Humans
    Proceedings of the National Academy of Sciences, Vol. 86, No. 22. (15 November 1989), pp. 8717-8721.
    by Mark J Mamula, Madeline Baer, Joe Craft, Sidney Altman
    posted to ecoli human immunity prokaryote protein rnasep by zwang on 2008-03-17 06:07:54 as ***
  • The distribution and genetic structure of Escherichia coli in Australian vertebrates: host and geographic effects
    Microbiology, Vol. 149, No. 12. (1 December 2003), pp. 3575-3586.
    by David M Gordon, Ann Cowling
    posted to ecoli niche by westoll on 2008-03-27 14:26:32 as **
  • Relationship between Growth Rate and ATP Concentration in Escherichia coli: A BIOASSAY FOR AVAILABLE CELLULAR ATP
    J. Biol. Chem., Vol. 279, No. 9. (27 February 2004), pp. 8262-8268.
    by David A Schneider, Richard L Gourse
    posted to atp ecoli growth sampling by westoll on 2008-03-03 14:15:23 as **
  • Transcription Regulation by Initiating NTP Concentration: rRNA Synthesis in Bacteria
    Science, Vol. 278, No. 5346. (19 December 1997), pp. 2092-2097.
    by Tamas Gaal, Michael S Bartlett, Wilma Ross, Charles L Turnbough, Richard L Gourse
    posted to atp ecoli growth by westoll on 2008-02-15 10:35:23 as **
  • Invariance of the Nucleoside Triphosphate Pools of Escherichia coli with Growth Rate
    J. Biol. Chem., Vol. 275, No. 6. (11 February 2000), pp. 3931-3935.
    by Carsten Petersen, Lisbeth B Moller
    posted to atp ecoli growth by westoll on 2008-03-03 14:13:35 as **
  • Differential cytokine and chemokine responses of bovine mammary epithelial cells to Staphylococcus aureus and Escherichia coli.
    Cytokine, Vol. 38, No. 1. (April 2007), pp. 12-21.
    by H Lahouassa, E Moussay, P Rainard, C Riollet
    posted to ecoli mastitis saureus by waszak on 2008-05-21 15:06:44 as **
  • Assembly and overexpression of membrane proteins in Escherichia coli
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. 1610, No. 1. (17 February 2003), pp. 3-10.
    by David Drew, Linda Fröderberg, Louise Baars, Jan-Willem L de Gier
    posted to ecoli membrane_protein overexpression by viktor21614 on 2008-07-24 08:48:22 as **
  • Targeting, Insertion, and Localization of Escherichia coli YidC
    J. Biol. Chem., Vol. 277, No. 15. (5 April 2002), pp. 12718-12723.
    by Malene L Urbanus, Linda Froderberg, David Drew, Petra Bjork, Jan-Willem L de Gier, Josef Brunner, Bauke Oudega, Joen Luirink
    posted to ecoli membrane_protein by viktor21614 on 2008-06-12 16:13:27 as **
  • Stationary Phase Expression of a Novel Escherichia coli Outer Membrane Lipoprotein and Its Relationship with Mammalian Apolipoprotein D
    J. Biol. Chem., Vol. 270, No. 39. (29 September 1995), pp. 23097-23103.
    by Russell E Bishop, Sonya S Penfold, Laura S Frost, Joachim-Volker Höltje, Joel H Weiner
    posted to ecoli expression membrane_protein stationary_phase_expression by viktor21614 on 2008-05-21 16:13:19 as **
  • Effects of SecE Depletion on the Inner and Outer Membrane Proteomes of Escherichia coli
    J. Bacteriol., Vol. 190, No. 10. (15 May 2008), pp. 3505-3525.
    by Louise Baars, Samuel Wagner, David Wickstrom, Mirjam Klepsch, Jimmy A Ytterberg, Klaas J van Wijk, Jan-Willem de Gier
    posted to ecoli membrane_protein sec_translocon by viktor21614 on 2008-08-04 08:06:24 as **
  • Enhanced cell-free protein synthesis using a S30 extract from Escherichia coli grown rapidly at 42 degrees C in an amino acid enriched medium.
    Biotechnol Prog, Vol. 21, No. 2. (r 2005), pp. 608-613.
    by T Yamane, Y Ikeda, T Nagasaka, H Nakano
    posted to cell_free ecoli s30 by viktor21614 on 2008-07-22 15:38:23 as ** along with 1 person Odi
  • Growth phase-dependent expression of drug exporters in Escherichia coli and its contribution to drug tolerance.
    J Bacteriol, Vol. 188, No. 16. (August 2006), pp. 5693-5703.
    by A Kobayashi, H Hirakawa, T Hirata, K Nishino, A Yamaguchi
    posted to ecoli expression growth_phase-dependent by viktor21614 on 2008-04-30 17:16:58 as ** along with 1 person martainn
  • Overexpression of the Escherichia coli sugE gene confers resistance to a narrow range of quaternary ammonium compounds.
    J Bacteriol, Vol. 184, No. 9. (May 2002), pp. 2543-2545.
    by YJ Chung, MH Saier
    posted to ecoli suge by viktor21614 on 2007-10-11 09:25:58 as ** along with 1 person netterpaladin
  • Consequences of Membrane Protein Overexpression in Escherichia coli
    Mol Cell Proteomics, Vol. 6, No. 9. (1 September 2007), pp. 1527-1550.
    by Samuel Wagner, Louise Baars, Jimmy A Ytterberg, Anja Klussmeier, Claudia S Wagner, Olof Nord, Per-Ake Nygren, Klaas J van Wijk, Jan-Willem de Gier
    posted to ecoli expression membrane_protein by viktor21614 on 2008-06-12 13:50:18 as **
  • New Escherichia coli outer membrane proteins identified through prediction and experimental verification
    Protein Sci, Vol. 15, No. 4. (1 April 2006), pp. 884-889.
    by Paola Marani, Samuel Wagner, Louise Baars, Pierre Genevaux, Jan-Willem De Gier, Ingmarie Nilsson, Rita Casadio, Gunnar Von Heijne
    posted to ecoli membrane_protein by viktor21614 on 2008-06-12 16:11:26 as **
  • Refolding of Escherichia coli outer membrane protein F in detergent creates LPS-free trimers and asymmetric dimers.
    Biochem J, Vol. 392, No. Pt 2. (1 December 2005), pp. 375-381.
    by V Visudtiphole, MB Thomas, DA Chalton, JH Lakey
    posted to ecoli folding membrane_protein by viktor21614 on 2008-07-22 15:53:58 as ** along with 1 person Odi
  • High-Level Expression of a Heterologous Gene in <I>Escherichia coli</I> in Response to Carbon-Nitrogen Source and C/N Ratio in a Batch Bioreactor
    Biotechnology Progress, Vol. 13, No. 2. (1997), pp. 151-155.
    by Sanjoy K Bhattacharya, Ashok K Dubey
    posted to minimal_medium expression ecoli by viktor21614 on 2008-09-22 13:09:56 as **
  • Cloning and expression of multiple integral membrane proteins from Mycobacterium tuberculosis in Escherichia coli
    Protein Sci, Vol. 14, No. 1. (1 January 2005), pp. 148-158.
    by Alla Korepanova, Fei P Gao, Yuanzi Hua, Huajun Qin, Robert K Nakamoto, Timothy A Cross
    posted to ecoli expression membrane_protein mycobacterium tuberculosis by viktor21614 on 2008-07-24 12:54:38 as **
  • Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis
    Proceedings of the National Academy of Sciences, Vol. 99, No. 5. (5 March 2002), pp. 2690-2695.
    by David Drew, Dan Sjostrand, Johan Nilsson, Thomas Urbig, Chen-Ni Chin, Jan-Willem de Gier, Gunnar von Heijne
    posted to ecoli membrane_protein by viktor21614 on 2008-06-12 16:32:01 as **
  • Growth of E. coli BL21 in minimal media with different gluconeogenic carbon sources and salt contents
    Applied Microbiology and Biotechnology, Vol. 73, No. 5. (January 2007), pp. 1169-1172.
    by Paliy, Oleg, Gunasekera, Thusitha
    posted to minimal_medium ecoli bl21 by viktor21614 on 2008-09-22 12:35:33 as **
  • Defining the Role of the Escherichia coli Chaperone SecB Using Comparative Proteomics
    J. Biol. Chem., Vol. 281, No. 15. (14 April 2006), pp. 10024-10034.
    by Louise Baars, Jimmy A Ytterberg, David Drew, Samuel Wagner, Claudia Thilo, Klaas J van Wijk, Jan-Willem de Gier
    posted to ecoli membrane_protein secb by viktor21614 on 2008-06-12 16:20:29 as **
  • Optimization of an Escherichia coli system for cell-free synthesis of selectively N-labelled proteins for rapid analysis by NMR spectroscopy.
    Eur J Biochem, Vol. 271, No. 20. (October 2004), pp. 4084-4093.
    by K Ozawa, MJ Headlam, PM Schaeffer, BR Henderson, NE Dixon, G Otting
    posted to cell_free ecoli labeling nmr by viktor21614 on 2008-07-24 08:21:33 as ** along with 2 people dayjm Odi
  • Tuning Escherichia coli for membrane protein overexpression
    Proceedings of the National Academy of Sciences, Vol. 105, No. 38. (2008), pp. 14371-14376.
    by Samuel Wagner, Mirjam M Klepsch, Susan Schlegel, Ansgar Appel, Roger Draheim, Michael Tarry, Martin Högbom, Klaas J van Wijk, Dirk J Slotboom, Jan O Persson, Jan-Willem de Gier
    posted to t7-rna_polymerase overexpression membrane_protein expression ecoli bl21 by viktor21614 on 2008-09-29 13:54:05 as **
  • Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata
    Nucl. Acids Res. (11 October 2007), gkm815.
    by Jeremiah J Faith, Michael E Driscoll, Vincent A Fusaro, Elissa J Cosgrove, Boris Hayete, Frank S Juhn, Stephen J Schneider, Timothy S Gardner
    posted to compendium data ecoli microarray yeast by tvdbulck on 2008-05-16 14:42:16 as ** along with 1 person jfr
  • Gateway vectors for the production of combinatorially-tagged His6-MBP fusion proteins in the cytoplasm and periplasm of Escherichia coli.
    Protein science : a publication of the Protein Society, Vol. 14, No. 12. (December 2005), pp. 2964-2971.
    by S Nallamsetty, BP Austin, KJ Penrose, DS Waugh
    posted to ecoli gateway pdest periplasm by ts3435 on 2008-08-28 10:27:45 as **
  • Crystal structure of the epsilon subunit of the proton-translocating ATP synthase from Escherichia coli.
    Structure, Vol. 5, No. 9. (15 September 1997), pp. 1219-1230.
    by U Uhlin, GB Cox, JM Guss
    posted to ecoli epsilon structure by tji on 2007-12-06 06:11:58 as **
  • Inhibitory properties of endogenous subunit epsilon in the Escherichia coli F1 ATPase.
    Arch Biochem Biophys, Vol. 197, No. 1. (1 October 1979), pp. 83-89.
    by PP Laget, JB Smith
    posted to ecoli epsilon inhibitor by tji on 2007-12-10 05:53:40 as **
  • The conformation of the epsilon- and gamma-subunits within the Escherichia coli F(1) ATPase.
    J Biol Chem, Vol. 276, No. 50. (14 December 2001), pp. 47227-47232.
    by AC Hausrath, RA Capaldi, BW Matthews
    posted to ecoli epsilon gamma structure by tji on 2008-02-08 02:49:28 as **
  • Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e8.
    by Jeremiah J Faith, Boris Hayete, Joshua T Thaden, Ilaria Mogno, Jamey Wierzbowski, Guillaume Cottarel, Simon Kasif, James J Collins, Timothy S Gardner
    posted to transcription regulation ecoli by teuder on 2007-01-11 07:54:33 as ** along with 7 people and 2 groups icases jfr nickluscombe aswin heliopais austin roys EBI-regulation TNT
  • Computational analysis of protein-protein interactions in metabolic networks of Escherichia coli and yeast.
    Genome informatics. International Conference on Genome Informatics, Vol. 18 (2007), pp. 162-172.
    by C Huthmacher, C Gille, HG Holzhütter
    posted to ecoli methods yeast by Takayuki on 2008-06-15 10:13:49 as *** along with 1 person csanford
  • Dynamic Compartmentalization of Bacteria: Accurate Division in E. Coli
    Physical Review Letters, Vol. 87, No. 27. (10 December 2001), 278102.
    by Martin Howard, Andrew D Rutenberg, Simon de Vet
    posted to min-oscillations ecoli cell-division by softsimu on 2008-09-23 03:23:46 as **
  • Interaction network containing conserved and essential protein complexes in Escherichia coli
    Nature, Vol. 433, No. 7025. (03 February 2005), pp. 531-537.
    by Gareth Butland, Jose M Peregrin-Alvarez, Joyce Li, Wehong Yang, Xiaochun Yang, Veronica Canadien, Andrei Starostine, Dawn Richards, Bryan Beattie, Nevan Krogan, Michael Davey, John Parkinson, Jack Greenblatt, Andrew Emili
    posted to ecoli networks protein by snuppepuppan on 2005-03-29 07:29:46 as ** along with 6 people karbak bjorns balajis BarrosH gcalda discreteonyxorb
  • Anticipatory Behavior Within Microbial Genetic Networks
    Science (8 May 2008), 1154456.
    by Ilias Tagkopoulos, Yir-Chung Liu, Saeed Tavazoie
    posted to biological_networks ecoli by roys on 2008-06-08 02:56:46 as ** along with 7 people and 1 group dbikard djkt skumagai brembs jjray deanmalmgren stringertheory Centre de Recherches Interdisciplinaires
  • Convective-Diffusion-Based Fluorescence Correlation Spectroscopy for Detection of a Trace Amount of E. coli in Water
    Appl. Opt., Vol. 42, No. 16. (1 June 2003), pp. 2987-2994.
    by De-Kui Qing, Pinar M Mengüç, Fred A Payne, Mary-Grace C Danao
    posted to escherichia ecoli coli correlation detection diffusion fcs fluorescence spectroscopy water by rodney on 2008-05-31 18:27:36 as **
  • Some aspects of E. coli promoter evolution observed in a molecular evolution experiment.
    J Mol Evol, Vol. 62, No. 5. (May 2006), pp. 536-550.
    by S Liu, A Libchaber
    posted to escherichia ecoli coli by rodney on 2007-07-26 05:22:53 as ** along with 1 group Kopelman_Group
  • Characterization of photodamage to escherichia coli in optical traps
    Biophys J, Vol. 77, No. 5. (November 1999), pp. 2856-2863.
    by KC Neuman, EH Chadd, GF Liou, K Bergman, SM Block
    posted to escherichia ecoli coli optical photodamage tweezers by rodney on 2007-07-29 22:07:42 as ** along with 1 person and 1 group NicMag Kopelman_Group
  • Streptomyces lividans as a host for the production and secretion of Escherichia coli TEM beta-lactamase.
    Lett Appl Microbiol, Vol. 28, No. 4. (April 1999), pp. 321-326.
    by C Isiegas, V Parro, RP Mellado
    posted to ecoli expression streptomyces by robert on 2006-02-08 14:52:20 as **
  • High volumetric yields of functional dimeric miniantibodies in Escherichia coli, using an optimized expression vector and high-cell-density fermentation under non-limited growth conditions.
    Appl Microbiol Biotechnol, Vol. 46, No. 5-6. (December 1996), pp. 524-532.
    by U Horn, W Strittmatter, A Krebber, U Knüpfer, M Kujau, R Wenderoth, K Müller, S Matzku, A Plückthun, D Riesenberg
    posted to ecoli expression by robert on 2006-07-19 15:32:06 as **
  • Chaperonins govern growth of Escherichia coli at low temperatures.
    Nat Biotechnol, Vol. 21, No. 11. (November 2003), pp. 1266-1267.
    by M Ferrer, TN Chernikova, MM Yakimov, PN Golyshin, KN Timmis
    posted to ecoli expression by robert on 2006-02-08 11:40:34 as **
  • Codon usage tabulated from international DNA sequence databases: status for the year 2000.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000)
    by Y Nakamura, T Gojobori, T Ikemura
    posted to codon-usage ecoli expression by robert on 2006-02-09 09:15:50 as ** along with 1 person nagendraproj
  • Structural basis for the substrate specificity of tobacco etch virus protease.
    The Journal of biological chemistry, Vol. 277, No. 52. (27 December 2002), pp. 50564-50572.
    by J Phan, A Zdanov, AG Evdokimov, JE Tropea, HK Peters, RB Kapust, M Li, A Wlodawer, DS Waugh
    posted to cleavage cloning ecoli expression structure-function by robert on 2008-04-15 15:40:23 as **
  • Genetic design for facilitated production and recovery of recombinant proteins in Escherichia coli.
    Biotechnol Appl Biochem, Vol. 35, No. Pt 2. (April 2002), pp. 91-105.
    by P Jonasson, S Liljeqvist, Pa Nygren, S Stahl
    posted to affinity ecoli expression fusion purification by robert on 2006-02-08 11:37:19 as **
  • Inhibition of tobacco etch virus protease activity by detergents.
    Protein expression and purification, Vol. 27, No. 1. (January 2003), pp. 109-114.
    by AK Mohanty, CR Simmons, MC Wiener
    posted to cleavage cloning ecoli expression by robert on 2008-04-15 15:41:41 as **
  • Studies on transformation of Escherichia coli with plasmids.
    J Mol Biol, Vol. 166, No. 4. (5 June 1983), pp. 557-580.
    by D Hanahan
    posted to cloning ecoli by robert on 2006-05-08 14:05:54 as **
  • The role of the thioredoxin and glutaredoxin pathways in reducing protein disulfide bonds in the Escherichia coli cytoplasm.
    J Biol Chem, Vol. 272, No. 25. (20 June 1997), pp. 15661-15667.
    by WA Prinz, F Aslund, A Holmgren, J Beckwith
    posted to ecoli expression by robert on 2006-02-08 11:54:03 as ** along with 1 person Gehrke
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