Tag eisen_journal_club [127 articles] Export

Recent papers classified by the tag eisen_journal_club.

	Programming gene expression with combinatorial promoters. [My Copy] Molecular systems biology, Vol. 3 (13 November 2007) by Robert Sidney S. Cox, Michael G. Surette, Michael B. Elowitz posted to eisen_journal_club ryan_presented by lusk on 2008-03-28 22:33:23 as along with 16 people and 3 groups balabu Synthetic_Biology_Literature Retchless tmmurali austin dpollard balicea kengg dbikard margaritis cjeans zwang discreteonyxorb cabbagezs Ema tresch TranscriptionalRegulationWithThermodynamicModels EisenLab SynBioSys
	High-throughput sequence alignment using Graphics Processing Units [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007), 474. by Michael Schatz, Cole Trapnell, Arthur Delcher, Amitabh Varshney posted to eisen_journal_club stuart_presented by lusk on 2008-03-28 22:32:51 as along with 19 people and 3 groups aheilbut druvus polivares naoya n00c natstreet rschulz operon orzenil Yanno guhjy sephy laughcry nedwards mdimon cndewey heliopais urgi tpreeprem BergmanLab KCL & UCL Bioinformatics gatech-compgenomics
	Pleiotropic scaling of gene effects and the ‘cost of complexity’ [My Copy] Nature, Vol. 452, No. 7186., pp. 470-472. by Günter P. Wagner, Jane P. Kenney-Hunt, Mihaela Pavlicev, Joel R. Peck, David Waxman, James M. Cheverud posted to colin_presented eisen_journal_club by lusk on 2008-03-28 22:32:14 as along with 4 people Garamonfok bpcusack biomcgary natstreet
	Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos. [My Copy] Dev Biol (13 February 2008) by Thomas Gregor, Alistair P P. McGregor, Eric F F. Wieschaus posted to brant_presented eisen_journal_club by lusk on 2008-03-28 22:31:15 as along with 1 person emptyhb
	Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation [My Copy] PLoS Biology, Vol. 6, No. 3. (1 March 2008), e65. by Sushma Shivaswamy, Akshay Bhinge, Yongjun Zhao, Steven Jones, Martin Hirst, Vishwanath R. Iyer posted to eisen_journal_club nucleosome rich_presented by lusk on 2008-03-28 22:30:43 as along with 3 people inesdesantiago djkt vega
	Evolution of novel abdominal appendages in a sepsid fly from histoblasts, not imaginal discs [My Copy] Evolution & Development, Vol. 9, No. 4. (August 2007), pp. 347-354. by Bowsher, H. Julia, Nijhout, H. Frederik posted to eisen_journal_club emily_presented evo_devo round_robin by dpollard on 2007-11-17 00:12:25 as along with 1 person and 1 group brant EisenLab
	In vivo dynamics of RNA polymerase II transcription [My Copy] Nat Struct Mol Biol, Vol. 14, No. 9. (5 September 2007), pp. 796-806. by Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, et al.Yehuda Brody, Shailesh M. Shenoy, Robert D. Phair, Robert H. Singer posted to colin_presented eisen_journal_club modeling round_robin transcription by dpollard on 2007-11-17 00:11:00 as along with 5 people and 3 groups jjray dchughes madhadron cwbrown margaritis EisenLab G4ID Genetics-of-Gambling
	Unmasking Activation of the Zygotic Genome Using Chromosomal Deletions in the Drosophila Embryo [My Copy] PLoS Biology, Vol. 5, No. 5. (1 May 2007), e117. by Stefano De Renzis, Olivier Elemento, Saeed Tavazoie, Eric F. Wieschaus posted to drosophila eisen_journal_club embryo gene_expression matt_presented round_robin by dpollard to the group EisenLab on 2007-11-17 00:09:40 as along with 3 people and 2 groups daveGerrard cisevol wrowell BergmanLab Cline_lab
	Global analysis of patterns of gene expression during Drosophila embryogenesis [My Copy] Genome Biology, Vol. 8 (23 July 2007), R145. by Pavel Tomancak, Benjamin P. Berman, Amy Beaton, et al.Richard Weiszmann, Elaine Kwan, Volker Hartenstein, Susan E. Celniker, Gerald M. Rubin posted to drosophila eisen_journal_club embryonic_patterning expression_pattern gene_expression matt_presented round_robin by dpollard to the group EisenLab on 2007-11-17 00:04:13 as along with 4 people emptyhb benlansdel cajunsushi caseybrown
	Reliable prediction of regulator targets using 12 Drosophila genomes [My Copy] Genome Research, Vol. 17, No. 12. (7 December 2007), pp. 1919-1931. by Pouya Kheradpour, Alexander Stark, Sushmita Roy, Manolis Kellis posted to cis_regulatory_elements drosophila eisen_journal_club matt_presented prediction round_robin by dpollard to the group EisenLab on 2007-11-17 00:01:35 as along with 9 people and 1 group heliopais valeriehilgers lp2 nklee maximilianh roys caseybrown emptyhb barwil cis-regulatory-evolution
	Dissecting Timing Variability in Yeast Meiosis [My Copy] Cell, Vol. 131, No. 3. (2 November 2007), pp. 544-556. by Iftach Nachman, Aviv Regev, Sharad Ramanathan posted to eisen_journal_club lenny_presented round_robin by dpollard to the group EisenLab on 2007-11-16 23:55:04 as along with 2 people balabu margaritis
	MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216. by Saurabh Sinha, Xin He posted to alignment alignment_accuracy binding_site_alignment brant_presented cis_regulatory_elements eisen_journal_club method round_robin by dpollard to the group EisenLab on 2007-11-16 23:53:34 as along with 7 people and 1 group ana cjeans zwang maximilianh hpaces Ema uwe cis-regulatory-evolution
	Constraint and turnover in sex-biased gene expression in the genus Drosophila [My Copy] Nature, Vol. 450, No. 7167. (08 November 2007), pp. 233-237. by Yu Zhang, David Sturgill, Michael Parisi, Sudhir Kumar, Brian Oliver posted to dan_presented drosophila eisen_journal_club expression_divergence gene_expression round_robin by dpollard to the group EisenLab on 2007-11-16 23:49:54 as along with 3 people and 2 groups daveGerrard CharlesM indigoviolet BergmanLab cis-regulatory-evolution
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to eisen_journal_club polymorphism round_robin sequencing_technology structural_variation stuart_presented by dpollard to the group EisenLab on 2007-10-30 06:38:10 as along with 22 people and 1 group torfinnnome jandot n00c jonilaserson jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dchughes AaronDarling rdiaz giovanni jlangdon annacarina07 Neeperando jfr caseybrown Journal picks
	Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression [My Copy] Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560. by Christopher D. Brown, David S. Johnson, Arend Sidow posted to cis_regulatory_elements colin_presented conservation eisen_journal_club grammar in_depth regulatory_evolution round_robin stew_presented by dpollard to the group EisenLab on 2007-10-29 18:57:23 as along with 10 people and 1 group pradiptaray djkt joepickrell zwang Garamonfok Stew mimulus_99 maximilianh cisevol emptyhb cis-regulatory-evolution
	Orthologous Transcription Factors in Bacteria Have Different Functions and Regulate Different Genes [My Copy] PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e175. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted to bacteria colin_presented eisen_journal_club protein_function_evolution round_robin transcription_factor by dpollard to the group EisenLab on 2007-10-29 18:46:53 as along with 10 people and 2 groups druvus treangen carlk operon dquest djkt zwang cabbagezs heliopais blobbybirdman cis-regulatory-evolution Myxo group
	ZIPK: A Unique Case of Murine-Specific Divergence of a Conserved Vertebrate Gene. [My Copy] PLoS Genet, Vol. 3, No. 10. (19 October 2007) by Yishay Shoval, Shmuel Pietrokovski, Adi Kimchi posted to devin_presented eisen_journal_club lineage_specific protein_function_evolution round_robin by dpollard to the group EisenLab on 2007-10-29 18:43:48 as
	Modeling DNA-binding of Escherichia coli sigma70 exhibits a characteristic energy landscape around strong promoters [My Copy] Nucl. Acids Res. (16 October 2007), gkm720. by Johanna Weindl, Pavol Hanus, Zaher Dawy, Juergen Zech, Joachim Hagenauer, Jakob C. Mueller posted to bacteria cis_regulatory_elements eisen_journal_club energy_landscape promoter rich_presented round_robin by dpollard on 2007-10-25 01:24:56 as along with 3 people and 1 group jjray operon maximilianh EisenLab
	Discriminative motif discovery in DNA and protein sequences using the DEME algorithm. [My Copy] BMC bioinformatics, Vol. 8, No. 1. (2007) by E. Redhead, T. L. Bailey posted to dan_presented eisen_journal_club motif_detection prediction round_robin by dpollard on 2007-10-25 01:20:26 as along with 7 people and 1 group wowalz tmarscha cjeans nklee niallhaslam maximilianh idonaldson EisenLab
	Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes [My Copy] Science, Vol. 317, No. 5845. (21 September 2007), pp. 1753-1756. by Julie C. Hotopp, Michael E. Clark, Deodoro C. S. G. Oliveira, et al.Jeremy M. Foster, Peter Fischer, Monica C. Torres, Jonathan D. Giebel, Nikhil Kumar, Nadeeza Ishmael, Shiliang Wang, Jessica Ingram, Rahul V. Nene, Jessica Shepard, Jeffrey Tomkins, Stephen Richards, David J. Spiro, Elodie Ghedin, Barton E. Slatko, Herve Tettelin, John H. Werren posted to eisen_journal_club round_robin stuart_presented by dpollard to the group EisenLab on 2007-10-19 21:47:35 as along with 10 people and 1 group kmachemer treangen operon bluto zwang emmahe lp2 wrowell paulschlesinger Patola Cline_lab
	Predicting evolutionary patterns of mammalian teeth from development. [My Copy] Nature, Vol. 449, No. 7161. (27 September 2007), pp. 427-432. by Kathryn D. Kavanagh, Alistair R. Evans, Jukka Jernvall posted to colin_presented eisen_journal_club round_robin by dpollard to the group EisenLab on 2007-10-19 21:47:05 as along with 2 people cparada smbe2008
	Species-specific positive selection of the male-specific lethal complex that participates in dosage compensation in Drosophila. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 39. (25 September 2007), pp. 15412-15417. by M. A. Rodriguez, D. Vermaak, J. J. Bayes, H. S. Malik posted to angela_presented eisen_journal_club round_robin by dpollard to the group EisenLab on 2007-10-19 21:45:54 as along with 1 person and 1 group jbsaltz cis-regulatory-evolution
	Members of a Large Retroposon Family Are Determinants of Post-Transcriptional Gene Expression in <italic>Leishmania</italic> [My Copy] PLoS Pathog, Vol. 3, No. 9. (28 September 2007), e136. by Frédéric Bringaud, Michaela Müller, Gustavo C. Cerqueira, et al.Martin Smith, Annie Rochette, Najib M. A. El-Sayed, Barbara Papadopoulou, Elodie Ghedin posted to eisen_journal_club lenny_presented round_robin by dpollard to the group EisenLab on 2007-10-19 21:44:19 as along with 1 person orzenil
	Quantitative prediction of NF-kappa B DNA-protein interactions. [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 12. (11 June 2002), pp. 8167-8172. by I. A. Udalova, R. Mott, D. Field, D. Kwiatkowski posted to eisen_journal_club round_robin stuart_presented by dpollard to the group EisenLab on 2007-10-19 21:43:26 as along with 2 people and 1 group lptolik yevishere cis-regulatory-evolution
	Heritable Stochastic Switching Revealed by Single-Cell Genealogy [My Copy] PLoS Biol, Vol. 5, No. 9. (4 September 2007), e239. by Benjamin B. Kaufmann, Qiong Yang, Jerome T. Mettetal, Alexander van Oudenaarden posted to devin_presented eisen_journal_club round_robin by dpollard to the group EisenLab on 2007-10-19 21:42:07 as along with 4 people kvasznicza pkm jjray madhadron
	Gene duplication and the adaptive evolution of a classic genetic switch [My Copy] Nature, Vol. 449, No. 7163. (11 October 2007), pp. 677-681. by Chris T. Hittinger, Sean B. Carroll posted to adaptive_conflict duplication_degeneration_complementation eisen_journal_club in-depth regulatory_sequence_evolution yeast by dpollard to the group EisenLab on 2007-10-19 20:13:02 as along with 16 people and 1 group gjuggler sameersoi gipsoma wangbo dakelley druvus treangen mcphee dchughes djkt biomcgary blobbybirdman kjlipin skumagai clearbluespring bpcusack cis-regulatory-evolution
	Prediction of Gene Expression in Embryonic Structures of Drosophila melanogaster [My Copy] PLoS Computational Biology, Vol. 3, No. 7. (1 July 2007), e144. by Anastasia A. Samsonova, Mahesan Niranjan, Steven Russell, Alvis Brazma posted to angela_presented eisen_journal_club round_robin by dpollard on 2007-10-09 18:32:20 as along with 3 people and 1 group roys brant sebastien_vigneau EisenLab
	Crystal Structure of an Ancient Protein: Evolution by Conformational Epistasis [My Copy] Science (16 August 2007), 1142819. by Eric A. Ortlund, Jamie T. Bridgham, Matthew R. Redinbo, Joseph W. Thornton posted to round_robin eisen_journal_club devin_presented by dpollard to the group EisenLab on 2007-09-16 01:01:08 as along with 4 people bicko csjonline ramensky zwang
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to eisen_journal_club in_depth_suggestion by dpollard on 2007-09-05 23:31:21 as along with 22 people and 2 groups pradiptaray gdb fenghezi dbensasson caseybrown bryankr aalibes chad_davis djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
	Natural history and evolutionary principles of gene duplication in fungi [My Copy] Nature, Vol. 449, No. 7158. (06 September 2007), pp. 54-61. by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev posted to eisen_journal_club in_depth_suggestion by dpollard on 2007-09-05 19:46:48 as along with 19 people and 4 groups bcondon GustavoLacerda biomcgary gdb schwartzjmc keb45 gjuggler aheilbut tny dchughes djkt stajich zwang lp2 tzhughes maximilianh pkm bpcusack dandaman EisenLab G4ID Genetics-of-Gambling Mycology
	Functional conservation of Rel binding sites in drosophilid genomes [My Copy] Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1327-1335. by Richard R. Copley, Maxim Totrov, Jane Linnell, Simon Field, Jiannis Ragoussis, Irina A. Udalova posted to eisen_journal_club in_depth in_depth_suggestion by dpollard on 2007-09-05 19:45:58 as along with 3 people and 2 groups Stew cisevol yevishere EisenLab cis-regulatory-evolution
	Selection and evolution of enzymes from a partially randomized non-catalytic scaffold [My Copy] Nature, Vol. 448, No. 7155., pp. 828-831. by Burckhard Seelig, Jack W. Szostak posted to eisen_journal_club in_depth_suggestion by dpollard on 2007-08-30 08:14:33 as along with 4 people and 2 groups baiaixi stevanspringer aheilbut zwang EisenLab FAB-lab
	Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma [My Copy] Nature (04 July 2007) by Miriam F. Moffatt, Michael Kabesch, Liming Liang, et al.Anna L. Dixon, David Strachan, Simon Heath, Martin Depner, Andrea von Berg, Albrecht Bufe, Ernst Rietschel, Andrea Heinzmann, Burkard Simma, Thomas Frischer, Saffron A. G. Willis-Owen, Kenny C. C. Wong, Thomas Illig, Christian Vogelberg, Stephan K. Weiland, Erika von Mutius, Gonçalo R. Abecasis, Martin Farrall, Ivo G. Gut, Mark G. Lathrop, William O. C. Cookson posted to round_robin expression_polymorphism eisen_journal_club dan_presented association_mapping association by dpollard to the group EisenLab on 2007-08-25 00:50:23 as along with 3 people gruberjd vplagnol jo_davies
	Switching of the core transcription machinery during myogenesis. [My Copy] Genes Dev (17 August 2007) by Maria Divina E D. Deato, Robert Tjian posted to round_robin eisen_journal_club colin_presented by dpollard to the group EisenLab on 2007-08-25 00:47:19 as
	Comparative Analysis of Structured RNAs in S. cerevisiae Indicates a Multitude of Different Functions [My Copy] BMC Biology, Vol. 5 (18 June 2007), 25. by Stephan Steigele, Wolfgang Huber, Claudia Stocsits, Peter F. Stadler, Kay Nieselt posted to round_robin not_recommended eisen_journal_club devin_presented by dpollard to the group EisenLab on 2007-08-25 00:45:50 as along with 3 people and 1 group samgj alexg andersbj microRNA
	Design of multi-specificity in protein interfaces. [My Copy] PLoS computational biology, Vol. 3, No. 8. (1 August 2007), e164. by Elisabeth L. Humphris, Tanja Kortemme posted to round_robin rich_presented eisen_journal_club by dpollard to the group EisenLab on 2007-08-25 00:41:10 as along with 9 people and 2 groups bmduggan allmensch msuarezdiez jwm bicko Einat Scis0000002 phoenixzxl marck structural_bioinformatics Bioinformatics
	Innovation and robustness in complex regulatory gene networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 34. (21 August 2007), pp. 13591-13596. by S. Ciliberti, O. C. Martin, A. Wagner posted to brant_presented eisen_journal_club network round_robin venky_presented by dpollard on 2007-08-25 00:35:11 as along with 12 people and 3 groups abhishek_tiwari mjoach ocs benjaminsb balicea dakelley cmzmasek dlobo jmenche sebastien_vigneau zwang cisevol GEB EisenLab cis-regulatory-evolution
	Evolution of chromosome organization driven by selection for reduced gene expression noise [My Copy] Nature Genetics, Vol. 39, No. 8. (27 July 2007), pp. 945-949. by Nizar N. Batada, Laurence D. Hurst posted to eisen_journal_club stuart_presented by lusk on 2007-08-12 22:28:16 as along with 5 people and 2 groups jjray dpollard ealloza djkt zwang EisenLab BioinfoCIPF
	Flexible interaction of Drosophila Smad complexes with bipartite binding sites. [My Copy] Biochim Biophys Acta, Vol. 1769, No. 7-8. (g 2007), pp. 484-496. by S. Gao, A. Laughon posted to brant_presented eisen_journal_club by lusk on 2007-08-12 22:22:06 as
	Human gene organization driven by the coordination of replication and transcription [My Copy] Genome Res. (3 August 2007), gr.6533407. by Maxime Huvet, Samuel Nicolay, Marie Touchon, et al.Benjamin Audit, Yves D'aubenton-Carafa, Alain Arneodo, Claude Thermes posted to danr_presented eisen_journal_club by lusk on 2007-08-12 22:21:32 as along with 7 people polivares inesdesantiago Eroslavochka operon djkt cabbagezs bpcusack
	A periodic pattern of SNPs in the human genome [My Copy] Genome Res. (2 August 2007), gr.6223207. by Bo E. Madsen, Palle Villesen, Carsten Wiuf posted to danr_presented eisen_journal_club by lusk on 2007-08-12 22:20:47 as along with 2 people and 3 groups dchughes ljs Bioinformatics G4ID Genetics-of-Gambling
	Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses [My Copy] Genome Biology, Vol. 8 (05 June 2007), R101. by Long Li, Qianqian Zhu, Xin He, Saurabh Sinha, Marc S. Halfon posted to eisen_journal_club emily_presented by lusk on 2007-08-12 22:19:33 as along with 5 people and 1 group JustinCrocker dpollard cjeans maximilianh isimpson EisenLab
	Morphological evolution through multiple cis-regulatory mutations at a single gene [My Copy] Nature (15 July 2007) by Alistair P. Mcgregor, Virginie Orgogozo, Isabelle Delon, et al.Jennifer Zanet, Dayalan G. Srinivasan, François Payre, David L. Stern posted to eisen_journal_club in_depth in_depth_suggestion by dpollard on 2007-08-01 22:38:32 as along with 7 people and 2 groups athma djkt zwang Stew xingxu cisevol emptyhb EisenLab cis-regulatory-evolution
	Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction [My Copy] Genome Biology, Vol. 8 (08 June 2007), R106. by Yavor Hadzhiev, Michael Lang, Raymond Ertzer, Axel Meyer, Uwe Straehle, Ferenc Mueller posted to round_robin rich_presented regulatory_sequence_evolution regulatory_evolution in_depth_suggestion grammar eisen_journal_club crm cis_regulatory_elements by dpollard to the group EisenLab on 2007-08-01 22:37:08 as along with 4 people and 1 group jochenG maximilianh cjeans cisevol cis-regulatory-evolution
	A role for noncoding transcription in activation of the yeast PHO5 gene. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 19. (8 May 2007), pp. 8011-8016. by J. P. Uhler, C. Hertel, J. Q. Svejstrup posted to eisen_journal_club in_depth_suggestion by dpollard on 2007-08-01 22:33:51 as along with 1 group EisenLab
	Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. [My Copy] Nature, Vol. 429, No. 6991. (3 June 2004), pp. 571-574. by Joseph A. Martens, Lisa Laprade, Fred Winston posted to eisen_journal_club in_depth_suggestion by dpollard on 2007-08-01 22:32:49 as along with 3 people and 1 group bartjacobse alexg maralena EisenLab
	Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors. [My Copy] Genome Res (5 July 2007) by Daryi Wang, Huang-Mo M. Sung, Tzi-Yuan Y. Wang, et al.Chih-Jen J. Huang, Peggy Yang, Tiffany Chang, Yang-Chao C. Wang, Da-Lun L. Tseng, Jen-Pey P. Wu, Tso-Ching C. Lee, Ming-Che C. Shih, Wen-Hsiung H. Li posted to eisen_journal_club in_depth_suggestion by dpollard on 2007-07-18 19:16:42 as along with 5 people and 3 groups azazello jwestbrook emarker cisevol emptyhb EisenLab King_Lab cis-regulatory-evolution
	Genome-enabled hitchhiking mapping identifies QTLs for stress resistance in natural Drosophila [My Copy] Heredity, Vol. aop, No. current. by S. V. Nuzhdin, L. G. Harshman, M. Zhou, K. Harmon posted to eisen_journal_club in_depth_suggestion by dpollard on 2007-07-18 19:07:55 as along with 1 person and 1 group jbsaltz EisenLab
	Identification of co-regulated transcripts affecting male body size in Drosophila [My Copy] Genome Biology, Vol. 6, No. 6. (2005) by Cynthia Coffman, Marta Wayne, Sergey Nuzhdin, Laura Higgins, Lauren Mcintyre posted to eisen_journal_club in_depth_suggestion by dpollard on 2007-07-18 19:05:14 as along with 2 people and 1 group jbsaltz brant EisenLab
	Intronic microRNA precursors that bypass Drosha processing. [My Copy] Nature, Vol. 448, No. 7149. (5 July 2007), pp. 83-86. by J. Graham Ruby, Calvin H. Jan, David P. Bartel posted to devin_presented eisen_journal_club microrna round_robin by dpollard on 2007-07-02 21:28:41 as along with 14 people and 5 groups guhjy giovenko galka8_diploma thegoose2 daforerog omegas GustavoLacerda tharris gpalidwor andersbj stajich Garamonfok ale tolot27 C. elegans / WormBase Bioinformatics EisenLab microRNA Mycology

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round_robin	171
in_depth_suggestion	39
drosophila	29
dan_presented	28
devin_presented	26
in_depth	24
colin_presented	23
cis_regulatory_elements	20
rich_presented	20
stuart_presented	17
prediction	16
angela_presented	13
matt_presented	13
venky_presented	13
evolution	12
gene_expression	12
binding_site	11
method	11
brant_presented	10
emily_presented	10
motif	10
expression_divergence	9
transcription_factor	9
yeast	9
lenny_presented	8
network	8
adaptation	6
association_mapping	6
dynamics	6
enhancer	6
eqtl	6
genome_architecture	6
grammar	6
qtl	6
regulatory_evolution	6
stew_presented	6
ab_initio	5
human	5
insect	5
promoter	5
regulatory_sequence_evolution	5
conservation	4
crm	4
danr_presented	4
expression_pattern	4
expression_polymorphism	4
lineage_specific	4
polymorphism	4
protein_function_evolution	4
turnover	4
bacteria	3
comparative	3
discovery	3
in-depth	3
nucleosome	3
transcription	3
affinity	2
alignment	2
alignment_accuracy	2
array	2
association	2
binding	2
chip_chip	2
cnv	2
comparative_genomics	2
embryonic_patterning	2
epistasis	2
experimental_evolution	2
expression	2
gene_family	2
genealogy	2
genetic_interactions	2
genome_size	2
hybrid	2
kenetics	2
lethality	2
mammal	2
markov	2
microrna	2
model	2
modularity	2
morphology	2
motif_detection	2
mouse	2
neutral	2
not_recommended	2
pattern	2
phenotype	2
phylogeny	2
population_genetics	2
pwm	2
rate	2
sechellia	2
selection	2
sequence_properties	2
sequencing_technology	2
snp	2
structure	2
tissue-specific	2
variation	2

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