Tag energy_landscape [63 articles] Export Sort

Recent papers classified by the tag energy_landscape.

Hide details

	Topographical Complexity of Multidimensional Energy Landscapes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 49. (2006), pp. 18551-18555. by Gareth J. Rylance, Roy L. Johnston, Yasuhiro Matsunaga, Chun B. Li, Akinori Baba, Tamiki Komatsuzaki posted to energy_landscape conceptual_space by asyavitali on 2009-12-28 07:57:17 as
	Protein folding funnels: a kinetic approach to the sequence-structure relationship [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 89, No. 18. (15 September 1992), pp. 8721-8725. by P. E. Leopold, M. Montal, J. N. Onuchic posted to funnels energy_landscape by Diego_Prada on 2009-12-17 20:05:16 as along with 2 people rodrigofaccioli bgbg
	The energy landscape theory of protein folding: insights into folding mechanisms and scenarios. [My Copy] Advances in protein chemistry, Vol. 53 (2000), pp. 87-152. by J. N. Onuchic, H. Nymeyer, A. E. García, J. Chahine, N. D. Socci posted to funnels falta energy_landscape by Diego_Prada on 2009-12-17 19:59:55 as
	Toward an outline of the topography of a realistic protein-folding funnel [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 92, No. 8. (11 April 1995), pp. 3626-3630. by J. N. Onuchic, P. G. Wolynes, Z. Luthey-Schulten, N. D. Socci posted to funnels energy_landscape by Diego_Prada on 2009-12-17 19:48:29 as
	Recent developments in methodologies for calculating the entropy and free energy of biological systems by computer simulation. [My Copy] Current opinion in structural biology In Theory and simulation / Macromolecular assemblages, Vol. 17, No. 2. (April 2007), pp. 181-186. by Hagai Meirovitch posted to theory md energy_landscape by xdeupi on 2009-12-15 12:21:59 as along with 5 people and 1 group flbarroso sunhwan aqeel dmobley cchang Chang group
	The energy landscape of social balance [My Copy] (25 Aug 2009) by Seth A. Marvel, Steven H. Strogatz, Jon M. Kleinberg posted to social-physics networks energy_landscape complex_system by tictacgo on 2009-12-06 14:56:45 as along with 7 people and 1 group halukbingol vtraag Kovanen orahcio acrmartins deanmalmgren apocapoc Soslab
	A unified model of protein dynamics [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 13. (31 March 2009), pp. 5129-5134. by Hans Frauenfelder, Guo Chen, Joel Berendzen, et al.Paul W. Fenimore, HelÃ©n Jansson, Benjamin H. McMahon, Izabela R. Stroe, Jan Swenson, Robert D. Young posted to viscosity solvent protein_motions protein_dynamics liquids fluctuations energy_landscape by paulymer on 2009-12-05 16:50:15 as along with 8 people and 1 group Diego_Prada Christophe abovell jdstevenson amishp sobolevnrm zwang kevinchannon baker-group
	The Neurokinin A Receptor Activates Calcium and cAMP Responses through Distinct Conformational States [My Copy] In Journal of Biological Chemistry, Vol. 276, No. 37. (14 September 2001), pp. 34853-34861. by Tania Palanche, Brigitte Ilien, Sannah Zoffmann, et al.Marie-Pierre Reck, Bernard Bucher, Stuart J. Edelstein, Jean-Luc Galzi posted to energy_landscape binding_kinetics activation by xdeupi on 2009-12-04 16:36:51 as
	Turn-on switch in parathyroid hormone receptor by a two-step parathyroid hormone binding mechanism [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 44. (1 November 2005), pp. 16084-16089. by Marian Castro, Viacheslav O. Nikolaev, Dieter Palm, Martin J. Lohse, Jean-Pierre Vilardaga posted to energy_landscape binding_kinetics activation by xdeupi on 2009-12-04 15:40:00 as
	Optical techniques to analyze real-time activation and signaling of G-protein-coupled receptors. [My Copy] Trends in pharmacological sciences, Vol. 29, No. 3. (March 2008), pp. 159-165. by Martin J. Lohse, Viacheslav O. Nikolaev, Peter Hein, Carsten Hoffmann, Jean-Pierre P. Vilardaga, Moritz Bünemann posted to energy_landscape dynamics binding_kinetics activation by xdeupi on 2009-12-04 14:38:24 as along with 1 person guhjy
	Taking a Walk on a Landscape [My Copy] Science (New York, N.Y.) In Science, Vol. 293, No. 5530. (27 July 2001), pp. 612-613. by Charles L. Brooks, Jose N. Onuchic, David J. Wales posted to free_energy pes_based energy_landscape aux by Diego_Prada on 2009-12-03 16:32:50 as along with 1 person scampos
	Equilibrium density of states and thermodynamic properties of a model glass former [My Copy] The Journal of Chemical Physics, Vol. 127, No. 4. (2007), 044508. by Florent Calvo, Tetyana V. Bogdan, Vanessa K. de Souza, David J. Wales posted to free_energy pes_based energy_landscape aux by Diego_Prada on 2009-12-02 17:38:38 as
	The energy landscapes and motions of proteins [My Copy] Science In Science, Vol. 254, No. 5038. (13 December 1991), pp. 1598-1603. by H. Frauenfelder, S. G. Sligar, P. G. Wolynes posted to free_energy energy_landscape by Diego_Prada on 2009-12-02 16:56:12 as along with 5 people paulymer xdeupi FilipeMaia naitsabes kjell
	How Soft Is a Protein? A Protein Dynamics Force Constant Measured by Neutron Scattering [My Copy] Science, Vol. 288, No. 5471. (2 June 2000), pp. 1604-1607. by Giuseppe Zaccai posted to review flexibility energy_landscape conformational_changes by xdeupi on 2009-12-02 12:29:31 as
	Energy Landscape of Social Balance [My Copy] Physical Review Letters, Vol. 103, No. 19. (2009), 198701. by Seth A. Marvel, Steven H. Strogatz, Jon M. Kleinberg posted to social_balance networks energy_landscape complex-systems by tkf on 2009-11-18 16:08:31 as along with 1 person and 1 group jsaramak Complex Networks Research Group
	How to mark off paths on the protein energy landscape [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18879-18880. by Martin Gruebele posted to protein folding energy_landscape by apaydin on 2009-11-11 16:26:43 as
	Low barrier kinetics: Dependence on observables and free energy surface [My Copy] Journal of Computational Chemistry, Vol. 27, No. 2. (2006), pp. 125-134. by Hairong Ma, Martin Gruebele posted to theory energy_landscape activation by xdeupi on 2009-11-10 14:46:07 as
	Multi-scale characterization of the energy landscape of proteins with application to the C3D/Efb-C complex [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Nurit Haspel, Brian V. Geisbrecht, John Lambris, Lydia Kavraki posted to multiscale energy_landscape by apaydin on 2009-11-08 08:16:51 as
	Visual pigment: G-protein-coupled receptor for light signals [My Copy] Cellular and Molecular Life Sciences, Vol. 54, No. 12. (19 December 1998), pp. 1299-1315. by Y. Shichida, H. Imai posted to rhodopsin review pathway energy_landscape activation by xdeupi on 2009-10-29 11:43:58 as
	Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 47. (20 November 2007), pp. 18496-18501. by Karunesh Arora, Charles L. Brooks posted to switch kinetics energy_landscape conformational_changes activation by xdeupi on 2009-10-28 13:38:02 as along with 7 people and 2 groups jrperillaj barry allmensch cactus sobolevnrm jlh64 karunesh structural_bioinformatics baker-group
	Simple Energy Landscape Model for the Kinetics of Functional Transitions in Proteins [My Copy] The Journal of Physical Chemistry B, Vol. 109, No. 5. (1 February 2005), pp. 1959-1969. by Osamu Miyashita, Peter G. Wolynes, Jose N. Onuchic posted to pathways kinetics energy_landscape dynamics conformational_changes active-state activation by xdeupi on 2009-10-28 12:45:14 as along with 2 people abovell aqeel
	Asymmetric Kinetics of Protein Structural Changes [My Copy] Accounts of Chemical Research, Vol. 42, No. 6. (16 June 2009), pp. 778-787. by Stéphane Marchal, Josep Font, Marc Ribó, et al.Maria Vilanova, Robert S. Phillips, Reinhard Lange, Joan Torrent posted to pathway kinetics energy_landscape dynamics conformational_changes binding_kinetics active-state activation by xdeupi on 2009-10-28 09:14:43 as along with 1 person paulschlesinger
	Low-frequency vibrational modes and infrared absorbance of red, blue and green opsin. [My Copy] Journal of molecular modeling, Vol. 15, No. 8. (August 2009), pp. 959-969. by Saravana Prakash P. Thirumuruganandham, Herbert M. Urbassek posted to membrane_proteins md flexibility energy_landscape dynamics disorder by xdeupi on 2009-10-25 11:22:15 as along with 2 people saravan gcaltabiano
	Funnels in energy landscapes [My Copy] The European Physical Journal B - Condensed Matter and Complex Systems, Vol. 63, No. 3. (1 June 2008), pp. 387-391. by K. Klemm, C. Flamm, P. F. Stadler posted to funnels energy_landscape by Diego_Prada on 2009-10-20 19:42:52 as
	Exploring the lower part of discrete polymer model energy landscapes [My Copy] EPL (Europhysics Letters), Vol. 74, No. 4. (2006), pp. 726-732. by Michael T. Wolfinger, Sebastian Will, Ivo L. Hofacker, Rolf Backofen, Peter F. Stadler posted to hp_model energy_landscape by Diego_Prada on 2009-10-20 19:34:16 as
	Following Gibbs States -- The Energy Landscape of Mean Field Glassy Systems [My Copy] (21 Sep 2009) by Florent Krzakala, Lenka Zdeborová posted to satisfiability mean_field glassy_system gibbs_state energy_landscape cavity_method annealing by marinari on 2009-09-22 09:59:31 as
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted to activation active-state dynamics energy_landscape flexibility kinetics modeling nmr plasticity theory by xdeupi on 2009-07-11 11:26:37 as along with 9 people and 2 groups mittinatten oteri bmduggan okapi aqeel raik ruvido barry zwang structural_bioinformatics McCammon
	Metastability for reversible probabilistic cellular automata with self--interaction [My Copy] (3 Jul 2009) by Emilio N. M. Cirillo, Cristian Spitoni, Francesca R. Nardi posted to cellular_automa energy_landscape metastability parallel_dynamics by marinari on 2009-07-06 10:49:40 as
	The Thermodynamic Landscape of Testosterone Binding to Cytochrome P450 3A4: Ligand Binding and Spin State Equilibria† [My Copy] Biochemistry, Vol. 44, No. 4. (1 February 2005), pp. 1353-1366. by Arthur G. Roberts, Patricia A. Campbell, William M. Atkins posted to binding energy_landscape theory by xdeupi on 2009-06-27 12:33:29 as
	How Adequate are One- and Two-Dimensional Free Energy Landscapes for Protein Folding Dynamics? [My Copy] Physical Review Letters, Vol. 102, No. 23. (2009), 238102. by Gia G. Maisuradze, Adam Liwo, Harold A. Scheraga posted to free_energy protein_dynamics pca funnels energy_landscape dpca by Diego_Prada on 2009-06-15 09:51:22 as along with 1 person agrossfield
	Glass transition and random walks on complex energy landscapes [My Copy] (1 May 2009) by Andrea Baronchelli, Alain Barrat, Romualdo Pastor-Satorras posted to amorphous energy_landscape glass_transition global_topology network random_walk topology by marinari on 2009-05-04 10:16:30 as along with 1 person scratchmandoo
	Intrinsic motions along an enzymatic reaction trajectory. [My Copy] Nature, Vol. 450, No. 7171. (6 December 2007), pp. 838-844. by Katherine A. Henzler-Wildman, Vu Thai, Ming Lei, et al.Maria Ott, Magnus Wolf-Watz, Tim Fenn, Ed Pozharski, Mark A. Wilson, Gregory A. Petsko, Martin Karplus, Christian G. Hübner, Dorothee Kern posted to nmr energy_landscape dynamics activation by xdeupi on 2009-03-12 12:01:52 as along with 12 people and 1 group saravan ahmetbakan ubcg08l ruvido barry aqeel ebeutler cactus sobolevnrm paulschlesinger jlh64 yalexeev baker-group
	Diffusivity and configurational entropy maxima in short range attractive colloids [My Copy] Journal of Physics: Condensed Matter, Vol. 17, No. 12. (30 March 2005), pp. L113-L119. by Luca Angelani, Giuseppe Foffi, Francesco Sciortino, Piero Tartaglia posted to 2005 colloids disordered_systems energy_landscape glass-forming_liquids by angelani to the group smc-infm on 2008-11-04 09:22:41 as
	Short range attractive colloids: dynamics and energy landscape properties [My Copy] Journal of Physics: Condensed Matter, Vol. 20, No. 7. (2008), 075108. by Giuseppe Foffi, Luca Angelani posted to 2008 colloids disordered_systems energy_landscape glass-forming_liquids by angelani to the group smc-infm on 2008-11-04 09:19:15 as
	A hierarchy of timescales in protein dynamics is linked to enzyme catalysis [My Copy] Nature (18 November 2007) by Katherine A. Henzler-Wildman, Ming Lei, Vu Thai, Jordan S. Kerns, Martin Karplus, Dorothee Kern posted to dynamics energy_landscape enzyme protein by ruvido on 2008-10-31 13:44:58 as along with 9 people and 1 group Diego_Prada tmmurali allmensch cactus sobolevnrm jlh64 RamuAnandakrishnan dmobley chenway baker-group
	Dynamic personalities of proteins [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972. by Katherine Henzler-Wildman, Dorothee Kern posted to dynamics energy_landscape enzyme protein by ruvido on 2008-10-31 13:43:50 as along with 19 people and 1 group victorclaessen saravan Diego_Prada xdeupi viktor21614 barry pavanghatty chad_davis allmensch choonpeng rsantana cjeans sobolevnrm wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor baker-group
	Metastable States as a Key to the Dynamics of Supercooled Liquids [My Copy] Physical Review Letters, Vol. 84, No. 10. (6 March 2000), 2168. by Stephan Büchner, Andreas Heuer posted to dynamics energy_landscape by ruvido on 2008-10-16 14:56:46 as
	A Topographic View of Supercooled Liquids and Glass Formation [My Copy] Science, Vol. 267, No. 5206. (31 March 1995), pp. 1935-1939. by Frank H. Stillinger posted to dynamics energy_landscape subdiffusion by ruvido on 2008-10-16 09:43:43 as along with 5 people Diego_Prada cgguido kedmond weeks dchen
	The Rubik’s cube problem revisited: a statistical thermodynamic approach [My Copy] The European Physical Journal B - Condensed Matter and Complex Systems by C. Lee, M. Huang posted to complex energy_landscape rubik by ruvido on 2008-09-08 08:41:50 as
	Protein states and proteinquakes. [My Copy] Proc Natl Acad Sci U S A, Vol. 82, No. 15. (August 1985), pp. 5000-5004. by A. Ansari, J. Berendzen, S. F. Bowne, et al.H. Frauenfelder, I. E. Iben, T. B. Sauke, E. Shyamsunder, R. D. Young posted to dynamics energy_landscape experimental hierarchy models by ruvido on 2008-08-25 13:50:51 as along with 2 people aqeel kjell
	Rate theories and puzzles of hemeprotein kinetics [My Copy] Science, Vol. 229, No. 4711. (26 July 1985), pp. 337-345. by H. Frauenfelder, P. G. Wolynes posted to dynamics energy_landscape experimental hierarchy by ruvido on 2008-08-25 12:03:27 as
	Conformational Substates in Proteins [My Copy] Annual Review of Biophysics and Biophysical Chemistry, Vol. 17, No. 1. (1988), pp. 451-479. by H. Frauenfelder, F. Parak, R. D. Young posted to dynamics energy_landscape experimental hierarchy by ruvido on 2008-08-25 12:02:13 as along with 1 person FilipeMaia
	Looking into the energy landscape of myoglobin [My Copy] Nat Struct Mol Biol, Vol. 2, No. 10. (October 1995), pp. 848-851. by Thorn D. Leeson, D. A. Wiersma posted to dynamics energy_landscape hierarchy protein by ruvido on 2008-08-25 11:52:41 as along with 1 person alexfuerstenberg
	The energy landscape in non-biological and biological molecules [My Copy] Nat Struct Mol Biol, Vol. 5, No. 9. (1998), pp. 757-759. by Hans Frauenfelder, Daan T. Leeson posted to energy_landscape hierarchy by ruvido on 2008-08-25 10:31:16 as along with 3 people scampos alexfuerstenberg aleperd
	Free-Energy Landscape of Enzyme Catalysis† [My Copy] Biochemistry, Vol. 47, No. 11. (1 March 2008), pp. 3317-3321. by Stephen J. Benkovic, Gordon G. Hammes, Sharon Hammes-Schiffer posted to catalysis dhfr energy_landscape enzyme free-energy by ruvido on 2008-04-07 11:36:53 as along with 1 person xavierprat
	Coarse Master Equations for Peptide Folding Dynamics [My Copy] J. Phys. Chem. B (31 January 2008) by N. V. Buchete, G. Hummer posted to energy_landscape folding free-energy by ruvido on 2008-02-29 18:37:22 as along with 3 people and 1 group Diego_Prada apaydin sobolevnrm baker-group
	Dynamics of ligand binding to heme proteins [My Copy] Journal of Molecular Biology, Vol. 132, No. 3. (15 August 1979), pp. 343-368. by D. A. Case, M. Karplus posted to binding energy_landscape by ruvido on 2008-02-28 10:13:42 as along with 1 person Diego_Prada
	The Relaxation Distribution Function of Polyisobutylene in the Transition from Rubber-Like to Glass-Like Behavior [My Copy] Journal of Applied Physics, Vol. 24, No. 7. (1953), pp. 911-916. by John D. Ferry, Jr, Edwin R. Fitzgerald posted to binding energy_landscape ferrys_law by ruvido on 2008-02-28 10:05:39 as
	Using buried water molecules to explore the energy landscape of proteins [My Copy] Nat Struct Mol Biol, Vol. 3, No. 6. (June 1996), pp. 505-509. by Vladimir P. Denisov, Jorg Peters, Hans D. Horlein, Bertil Halle posted to barrier binding energy_landscape by ruvido on 2008-02-27 16:33:29 as
	Cooperativity, smooth energy landscapes and the origins of topology-dependent protein folding rates. [My Copy] J Mol Biol, Vol. 326, No. 1. (7 February 2003), pp. 247-253. by A. I. Jewett, V. S. Pande, K. W. Plaxco posted to energy_landscape fold-evolution heterogeneity structure by martainn on 2008-02-06 18:33:51 as

Note: You may cite this page as: http://www.citeulike.org/tag/energy_landscape

Result page: 1 2 Next

Sort by:
Order:	Default Ascending Descending
Empty fields:	Default First Last

dynamics	17
activation	11
enzyme	5
free_energy	5
funnels	5
hierarchy	5
kinetics	5
protein	5
theory	5
active-state	4
binding	4
binding_kinetics	4
conformational_changes	4
flexibility	4
review	4
experimental	3
folding	3
heterogeneity	3
myoglobin	3
structure	3
aux	2
bacteria	2
cis_regulatory_elements	2
colloids	2
disordered_systems	2
free-energy	2
glass-forming_liquids	2
lattice_model	2
md	2
networks	2
nmr	2
pathway	2
pes_based	2
plasticity	2
promoter	2
protein_dynamics	2
2005	1
2008	1
amorphous	1
annealing	1
barrier	1
catalysis	1
cavity_method	1
cellular_automa	1
complex	1
complex-systems	1
complex_system	1
conceptual_space	1
conformations	1
dhfr	1
disorder	1
dpca	1
eisen_journal_club	1
electrostatic_potentials	1
falta	1
ferrys_law	1
fluctuations	1
fold-evolution	1
gibbs_state	1
glass_transition	1
glassy_system	1
global_topology	1
hp_model	1
liquids	1
mean_field	1
membrane_proteins	1
metastability	1
modeling	1
models	1
molecular_dynamics	1
multiscale	1
network	1
parallel_dynamics	1
pathways	1
pca	1
protein_folding	1
protein_motions	1
random_walk	1
rhodopsin	1
rich_presented	1
round_robin	1
rubik	1
satisfiability	1
social-physics	1
social_balance	1
solvent	1
strain_induced_relaxation	1
subdiffusion	1
switch	1
topology	1
viscosity	1

Tag energy_landscape [63 articles] Export Sort

Related Tags