Tag enhancers [48 articles] Export

Recent papers classified by the tag enhancers.

	Histone modifications at human enhancers reflect global cell-type-specific gene expression [My Copy] Nature, Vol. 459, No. 7243. (18 March 2009), pp. 108-112. by Nathaniel D. Heintzman, Gary C. Hon, R. David Hawkins, et al.Pouya Kheradpour, Alexander Stark, Lindsey F. Harp, Zhen Ye, Leonard K. Lee, Rhona K. Stuart, Christina W. Ching, Keith A. Ching, Jessica E. Antosiewicz-Bourget, Hui Liu, Xinmin Zhang, Roland D. Green, Victor V. Lobanenkov, Ron Stewart, James A. Thomson, Gregory E. Crawford, Manolis Kellis, Bing Ren posted to insulators histones histone_modification expression enhancers clip-chip 2009 by suizifish on 2009-11-12 03:15:39 as along with 16 people and 2 groups akakak RyuOgawa inesdesantiago gdb djkt tonamswish t08681mn akundaje leliavski scjparker fenghezi TRHvidsten humburg frohike idonaldson sebastien_vigneau Epigenetics CTCF
	Global patterns of cis variation in human cells revealed by high-density allelic expression analysis [My Copy] Nature Genetics, Vol. 41, No. 11. (18 October 2009), pp. 1216-1222. by Bing Ge, Dmitry K. Pokholok, Tony Kwan, et al.Elin Grundberg, Lisanne Morcos, Dominique J. Verlaan, Jennie Le, Vonda Koka, Kevin C. L. Lam, Vincent Gagne, Joana Dias, Rose Hoberman, Alexandre Montpetit, Marie-Michele Joly, Edward J. Harvey, Daniel Sinnett, Patrick Beaulieu, Robert Hamon, Alexandru Graziani, Ken Dewar, Eef Harmsen, Jacek Majewski, Harald H. H. Goring, Anna K. Naumova, Mathieu Blanchette, Kevin L. Gunderson, Tomi Pastinen posted to methods expression enhancers by gderwin on 2009-10-29 02:01:41 as along with 10 people and 1 group bpcusack fenghezi songpku djkt qayub dill2009 zufar psique daforerog vplagnol Journal picks
	Organization of developmental enhancers in the Drosophila embryo [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 37, No. 17. (1 September 2009), pp. 5665-5677. by Dmitri Papatsenko, Yury Goltsev, Michael Levine posted to genome-organization enhancers by inesdesantiago on 2009-10-20 17:49:49 as along with 4 people and 1 group bsamal bmajoros al2na maximilianh Journal picks
	Genomic views of distant-acting enhancers [My Copy] Nature, Vol. 461, No. 7261. (09 September 2009), pp. 199-205. by Axel Visel, Edward M. Rubin, Len A. Pennacchio posted to review gene_regulation enhancers by cmzmasek on 2009-09-28 19:21:31 as along with 7 people and 1 group bpcusack inesdesantiago greg polivares gjuggler daforerog djkt Journal picks
	A chromatin insulator mediates transgene homing and very long-range enhancer-promoter communication. [My Copy] Development (Cambridge, England), Vol. 136, No. 18. (15 September 2009), pp. 3077-3087. by Miki Fujioka, Xian Wu, James B. Jaynes posted to promoters insulators gene_regulation enhancers engrailed drosophila by emmahe on 2009-08-24 12:07:17 as along with 1 person sebastien_vigneau
	Enhancer-promoter communication at the Drosophila engrailed locus [My Copy] Development, Vol. 136, No. 18. (15 September 2009), pp. 3067-3075. by Deborah Kwon, Diane Mucci, Kristofor K. Langlais, et al.Jeffrey L. Americo, Sarah K. Devido, Yuzhong Cheng, Judith A. Kassis posted to promoters insulators enhancers engrailed en drosophila by emmahe on 2009-08-24 12:05:09 as
	Evolving enhancer-promoter interactions within the tinman complex of the flour beetle, Tribolium castaneum. [My Copy] Development (Cambridge, England), Vol. 136, No. 18. (15 September 2009), pp. 3153-3160. by Jessica Doran D. Cande, Vivek S. Chopra, Michael Levine posted to tribolium tinman evo-devo enhancers drosophila by emmahe on 2009-08-24 12:02:20 as along with 2 people and 2 groups cisevol brant cis-regulatory-evolution BergmanLab
	Primate-specific evolution of an LDLR enhancer. [My Copy] Genome biology, Vol. 7, No. 8. (02 August 2006), R68. by Q. F. Wang, S. Prabhakar, Q. Wang, et al.A. M. Moses, S. Chanan, M. Brown, M. B. Eisen, J. F. Cheng, E. M. Rubin, D. Boffelli posted to conserved enhancers evolution primates by gderwin on 2009-07-07 01:26:28 as along with 3 people and 2 groups indigoviolet cmm olympos EisenLab FAB-lab
	Genomic androgen receptor-occupied regions with different functions, defined by histone acetylation, coregulators and transcriptional capacity. [My Copy] PLoS ONE, Vol. 3, No. 11. (2008) by L. Jia, B. P. Berman, U. Jariwala, et al.X. Yan, J. P. Cogan, A. Walters, T. Chen, G. Buchanan, B. Frenkel, G. A. Coetzee posted to acetylation chromatin enhancers h3 transcription by gderwin on 2009-06-08 19:47:22 as
	SAP18 promotes Krüppel-dependent transcriptional repression by enhancer-specific histone deacetylation. [My Copy] The Journal of biological chemistry, Vol. 284, No. 5. (30 January 2009), pp. 3012-3020. by A. Matyash, N. Singh, S. D. Hanes, H. Urlaub, H. Jäckle posted to acetylation enhancers h3 repressor transcription by gderwin on 2009-06-08 19:44:58 as along with 1 person maximilianh
	Epigenetic Regulation of Foxp3 Expression in Regulatory T Cells by DNA Methylation [My Copy] J Immunol, Vol. 182, No. 1. (1 January 2009), pp. 259-273. by Girdhari Lal, Nan Zhang, William van der Touw, et al.Yaozhong Ding, Wenjun Ju, Erwin P. Bottinger, St Reid, David E. Levy, Jonathan S. Bromberg posted to acetylation conserved cpg enhancers evolution h3 methylation transcription by gderwin on 2009-06-08 19:41:08 as along with 2 people leliavski Zephyrus
	In vitro and in vivo differentiated effector CD8 T cells display divergent histone acetylation patterns within the Ifng locus. [My Copy] Immunology letters, Vol. 122, No. 2. (21 February 2009), pp. 214-218. by S. Bandyopadhyay, H. Z. Qui, A. J. Adler posted to acetylation chromatin enhancers h3 promoter remodeling by gderwin on 2009-06-08 19:39:32 as
	A 220-nucleotide deletion of the intronic enhancer reveals an epigenetic hierarchy in immunoglobulin heavy chain locus activation. [My Copy] The Journal of experimental medicine, Vol. 206, No. 5. (11 May 2009), pp. 1019-1027. by Tirtha Chakraborty, Thomas Perlot, Ramesh Subrahmanyam, et al.Anant Jani, Peter H. Goff, Yu Zhang, Irina Ivanova, Frederick W. Alt, Ranjan Sen posted to acetylation chromatin enhancers h3 h3k4 h3k4me2 h3k9 h3k9me2 methylation recombination remodeling transcription by gderwin on 2009-06-08 19:31:43 as along with 1 person Annab
	Chromatin boundaries and chromatin domains. [My Copy] Cold Spring Harb Symp Quant Biol, Vol. 69 (2004), pp. 245-250. by G. Felsenfeld, B. Burgess-Beusse, C. Farrell, et al.M. Gaszner, R. Ghirlando, S. Huang, C. Jin, M. Litt, F. Magdinier, V. Mutskov, Y. Nakatani, H. Tagami, A. West, T. Yusufzai posted to chromatin enhancers insulator motif by gderwin on 2009-06-01 22:22:58 as
	The insulation of genes from external enhancers and silencing chromatin. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99 Suppl 4 (10 December 2002), pp. 16433-16437. by B. Burgess-Beusse, C. Farrell, M. Gaszner, et al.M. Litt, V. Mutskov, F. Recillas-Targa, M. Simpson, A. West, G. Felsenfeld posted to chromatin ctcf enhancers insulator motif silencing by gderwin on 2009-06-01 21:01:27 as
	Evidence for stabilizing selection in a eukaryotic enhancer element [My Copy] Nature, Vol. 403, No. 6769. (3 February 2000), pp. 564-567. by Michael Z. Ludwig, Casey Bergman, Nipam H. Patel, Martin Kreitman posted to enhancers evolution motif by gderwin on 2009-06-01 20:53:25 as along with 5 people and 1 group lusk ranb cisevol emptyhb brant cis-regulatory-evolution
	Direct regulation of knot gene expression by Ultrabithorax and the evolution of cis-regulatory elements in Drosophila. [My Copy] Development, Vol. 132, No. 7. (April 2005), pp. 1567-1577. by B. M. Hersh, S. B. Carroll posted to enhancers evolution motif repressor by gderwin on 2009-06-01 19:53:42 as along with 1 person and 1 group adepace EisenLab
	Functional Evolution of a cis-Regulatory Module [My Copy] PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93. by Michael Z. Ludwig, Arnar Palsson, Elena Alekseeva, Casey M. Bergman, Janaki Nathan, Martin Kreitman posted to conserved enhancers evolution motif by gderwin on 2009-06-01 19:44:28 as along with 5 people and 3 groups mimulus_99 blobbybirdman cisevol brant emptyhb UH - Computational Biology cis-regulatory-evolution Myxo group
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. [My Copy] Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816. by ENCODE Project Consortium, Ewan Birney, John A. Stamatoyannopoulos, et al.Anindya Dutta, Roderic Guigó, Thomas R. Gingeras, Elliott H. Margulies, Zhiping Weng, Michael Snyder, Emmanouil T. Dermitzakis, Robert E. Thurman, Michael S. Kuehn, Christopher M. Taylor, Shane Neph, Christoph M. Koch, Saurabh Asthana, Ankit Malhotra, Ivan Adzhubei, Jason A. Greenbaum, Robert M. Andrews, Paul Flicek, Patrick J. Boyle, Hua Cao, Nigel P. Carter, Gayle K. Clelland, Sean Davis, Nathan Day, Pawandeep Dhami, Shane C. Dillon, Michael O. Dorschner, Heike Fiegler, Paul G. Giresi, Jeff Goldy, Michael Hawrylycz, Andrew Haydock, Richard Humbert, Keith D. James, Brett E. Johnson, Ericka M. Johnson, Tristan T. Frum, Elizabeth R. Rosenzweig, Neerja Karnani, Kirsten Lee, Gregory C. Lefebvre, Patrick A. Navas, Fidencio Neri, Stephen C. Parker, Peter J. Sabo, Richard Sandstrom, Anthony Shafer, David Vetrie, Molly Weaver, Sarah Wilcox, Man Yu, Francis S. Collins, Job Dekker, Jason D. Lieb, Thomas D. Tullius, Gregory E. Crawford, Shamil Sunyaev, William S. Noble, Ian Dunham, France Denoeud, Alexandre Reymond, Philipp Kapranov, Joel Rozowsky, Deyou Zheng, Robert Castelo, Adam Frankish, Jennifer Harrow, Srinka Ghosh, Albin Sandelin, Ivo L. Hofacker, Robert Baertsch, Damian Keefe, Sujit Dike, Jill Cheng, Heather A. Hirsch, Edward A. Sekinger, Julien Lagarde, Josep F. Abril, Atif Shahab, Christoph Flamm, Claudia Fried, Jörg Hackermüller, Jana Hertel, Manja Lindemeyer, Kristin Missal, Andrea Tanzer, Stefan Washietl, Jan Korbel, Olof Emanuelsson, Jakob S. Pedersen, Nancy Holroyd, Ruth Taylor, David Swarbreck, Nicholas Matthews, Mark C. Dickson, Daryl J. Thomas, Matthew T. Weirauch, James Gilbert, Jorg Drenkow, Ian Bell, XiaoDong Zhao, K. G. Srinivasan, Wing-Kin K. Sung, Hong Sain S. Ooi, Kuo Ping P. Chiu, Sylvain Foissac, Tyler Alioto, Michael Brent, Lior Pachter, Michael L. Tress, Alfonso Valencia, Siew Woh W. Choo, Chiou Yu Y. Choo, Catherine Ucla, Caroline Manzano, Carine Wyss, Evelyn Cheung, Taane G. Clark, James B. Brown, Madhavan Ganesh, Sandeep Patel, Hari Tammana, Jacqueline Chrast, Charlotte N. Henrichsen, Chikatoshi Kai, Jun Kawai, Ugrappa Nagalakshmi, Jiaqian Wu, Zheng Lian, Jin Lian, Peter Newburger, Xueqing Zhang, Peter Bickel, John S. Mattick, Piero Carninci, Yoshihide Hayashizaki, Sherman Weissman, Tim Hubbard, Richard M. Myers, Jane Rogers, Peter F. Stadler, Todd M. Lowe, Chia-Lin L. Wei, Yijun Ruan, Kevin Struhl, Mark Gerstein, Stylianos E. Antonarakis, Yutao Fu, Eric D. Green, Ulaş Karaöz, Adam Siepel, James Taylor, Laura A. Liefer, Kris A. Wetterstrand, Peter J. Good, Elise A. Feingold, Mark S. Guyer, Gregory M. Cooper, George Asimenos, Colin N. Dewey, Minmei Hou, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Löytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, Haiyan Huang, Nancy R. Zhang, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Michael Seringhaus, Deanna Church, Kate Rosenbloom, W. James Kent, Eric A. Stone, NISC Comparative Sequencing Program, Baylor College of Medicine Human Genome Sequencing Center, Washington University Genome Sequencing Center, Broad Institute, Children's Hospital Oakland Research Institute, Serafim Batzoglou, Nick Goldman, Ross C. Hardison, David Haussler, Webb Miller, Arend Sidow, Nathan D. Trinklein, Zhengdong D. Zhang, Leah Barrera, Rhona Stuart, David C. King, Adam Ameur, Stefan Enroth, Mark C. Bieda, Jonghwan Kim, Akshay A. Bhinge, Nan Jiang, Jun Liu, Fei Yao, Vinsensius B. Vega, Charlie W. Lee, Patrick Ng, Atif Shahab, Annie Yang, Zarmik Moqtaderi, Zhou Zhu, Xiaoqin Xu, Sharon Squazzo, Matthew J. Oberley, David Inman, Michael A. Singer, Todd A. Richmond, Kyle J. Munn, Alvaro Rada-Iglesias, Ola Wallerman, Jan Komorowski, Joanna C. Fowler, Phillippe Couttet, Alexander W. Bruce, Oliver M. Dovey, Peter D. Ellis, Cordelia F. Langford, David A. Nix, Ghia Euskirchen, Stephen Hartman, Alexander E. Urban, Peter Kraus, Sara Van Calcar, Nate Heintzman, Tae Hoon H. Kim, Kun Wang, Chunxu Qu, Gary Hon, Rosa Luna, Christopher K. Glass, M. Geoff Rosenfeld, Shelley Force F. Aldred, Sara J. Cooper, Anason Halees, Jane M. Lin, Hennady P. Shulha, Xiaoling Zhang, Mousheng Xu, Jaafar N. Haidar, Yong Yu, Yijun Ruan, Vishwanath R. Iyer, Roland D. Green, Claes Wadelius, Peggy J. Farnham, Bing Ren, Rachel A. Harte, Angie S. Hinrichs, Heather Trumbower, Hiram Clawson, Jennifer Hillman-Jackson, Ann S. Zweig, Kayla Smith, Archana Thakkapallayil, Galt Barber, Robert M. Kuhn, Donna Karolchik, Lluis Armengol, Christine P. Bird, Paul I. de Bakker, Andrew D. Kern, Nuria Lopez-Bigas, Joel D. Martin, Barbara E. Stranger, Abigail Woodroffe, Eugene Davydov, Antigone Dimas, Eduardo Eyras, Ingileif B. Hallgrímsdóttir, Julian Huppert, Michael C. Zody, Gonçalo R. Abecasis, Xavier Estivill, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. McDowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Maxim Koriabine, Mikhail Nefedov, Kazutoyo Osoegawa, Yuko Yoshinaga, Baoli Zhu, Pieter J. de Jong posted to binding chromatin cpg dna enhancers evolution factor gc genomics prediction protein research structure variation by scjparker on 2009-05-30 14:38:49 as along with 25 people and 2 groups bartjacobse daveGerrard daforerog isimpson sharpton jessopher timhubbard polivares coela ilyashl aprasad myrtilus daed waszak guhjy jfr chad_davis kengg olympos blobbybirdman shikin fpattyn yevishere elfar eskay Bioinformatics UH - Computational Biology
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to dna enhancers evolution genomics prediction research structure by scjparker on 2009-05-30 14:21:58 as along with 39 people and 6 groups rsaito daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	Going the Distance: A Current View of Enhancer Action [My Copy] Science, Vol. 281, No. 5373. (3 July 1998), pp. 60-63. by Elizabeth M. Blackwood, James T. Kadonaga posted to enhancers review transcription by gderwin on 2009-05-30 01:14:06 as along with 2 people rpatward xingxu
	Scanning Human Gene Deserts for Long-Range Enhancers [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), 413. by Marcelo A. Nobrega, Ivan Ovcharenko, Veena Afzal, Edward M. Rubin posted to conserved enhancers evolution methods by gderwin on 2009-05-30 01:09:46 as along with 5 people djkt elzodw maximilianh heliopais blobbybirdman
	Functional Autonomy of Distant-Acting Human Enhancers. [My Copy] Genomics (4 March 2009) by Axel Visel, Jennifer A A. Akiyama, Malak Shoukry, Veena Afzal, Edward M M. Rubin, Len A A. Pennacchio posted to enhancers tra transcriptional-regulation by dchughes on 2009-05-13 09:59:18 as along with 2 people JustinCrocker maximilianh
	Stepwise Activation of Enhancer and Promoter Regions of the B Cell Commitment Gene Pax5 in Early Lymphopoiesis [My Copy] Immunity (02 April 2009) by Thorsten Decker, Pasca, Shane Mcmanus, et al.Qiong Sun, Constanze Bonifer, Hiromi Tagoh, Meinrad Busslinger posted to chromatin dna_methylation enhancers hematology immunology promoters stem_cells transcription_factors by absterga on 2009-04-28 22:28:59 as along with 2 people strands VGreiff
	Big Genomes Facilitate the Comparative Identification of Regulatory Elements [My Copy] PLoS ONE, Vol. 4, No. 3. (4 March 2009), e4688. by Brant K. Peterson, Emily E. Hare, Venky N. Iyer, et al.Steven Storage, Laura Conner, Daniel R. Papaj, Rick Kurashima, Eric Jang, Michael B. Eisen posted to ceratitis comparative_genomics drosophila enhancers genomes genomics regulatory_elements by emmahe on 2009-03-19 17:23:13 as along with 8 people and 2 groups natstreet lusk dpollard JustinCrocker daveGerrard maximilianh trfield idoerg RockmanLab BergmanLab
	The three 'C' s of chromosome conformation capture: controls, controls, controls [My Copy] Nature Methods, Vol. 3, No. 1. (20 December 2005), pp. 17-21. by Job Dekker posted to dna enhancers invitro methods perspective protocols regulation review by Dulcinea on 2009-03-17 22:21:33 as
	The role of enhancers as centres for general transcription factor recruitment [My Copy] Trends in Biochemical Sciences, Vol. 30, No. 11. (November 2005), pp. 593-599. by H. Szutorisz, N. Dillon, L. Tora posted to enhancers review transcription transcription_initiation transcription_regulation by siebert on 2009-03-12 17:12:54 as along with 1 person raylim
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to chip-seq enhancers by oelemento on 2009-03-02 01:29:25 as along with 23 people and 2 groups hzoltan tonamswish ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen rpatward cajunsushi WanderingAengus absterga provero cassj anphony dpollard caseybrown biomcgary xingxu idonaldson djkt RockmanLab cis-regulatory-evolution
	Pioneer factor interactions and unmethylated CpG dinucleotides mark silent tissue-specific enhancers in embryonic stem cells. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 30. (24 July 2007), pp. 12377-12382. by J. Xu, S. D. Pope, A. R. Jazirehi, et al.J. L. Attema, P. Papathanasiou, J. A. Watts, K. S. Zaret, I. L. Weissman, S. T. Smale posted to enhancers by raylim on 2009-01-12 18:36:28 as
	High-resolution profiling of histone methylations in the human genome. [My Copy] Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837. by Artem Barski, Suresh Cuddapah, Kairong Cui, et al.Tae-Young Y. Roh, Dustin E. Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao posted to dhs enhancers histone_methylations by raylim on 2008-12-14 04:31:24 as along with 22 people and 2 groups rsaito darian tonamswish stubrown fpattyn hagechouchin443 absterga ewilban1 suizifish jochenG caseybrown jernst giovenko guhjy kengg sebastien_vigneau jackjackjjj ghattem epigenetics ksha inesdesantiago dquest JLab Plantandetc
	Dynamics of Enhancer-Promoter Communication during Differentiation-Induced Gene Activation [My Copy] Molecular Cell, Vol. 10, No. 6. (December 2002), pp. 1467-1477. by Pantelis Hatzis, Iannis Talianidis posted to enhancers p300 by raylim on 2008-12-14 03:54:57 as along with 1 person and 1 group wrowell Cline_lab
	CBP and p300: HATs for different occasions [My Copy] Biochemical Pharmacology, Vol. 68, No. 6. (15 September 2004), pp. 1145-1155. by Eric Kalkhoven posted to enhancers p300 by raylim on 2008-12-14 03:52:56 as along with 2 people guhjy Piggeldi
	Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome [My Copy] Nat Genet, Vol. 39, No. 3. (04 February 2007), pp. 311-318. by Nathaniel D. Heintzman, Rhona K. Stuart, Gary Hon, et al.Yutao Fu, Christina W. Ching, R. David Hawkins, Leah O. Barrera, Sara Van Calcar, Chunxu Qu, Keith A. Ching, Wei Wang, Zhiping Weng, Roland D. Green, Gregory E. Crawford, Bing Ren posted to enhancers by raylim on 2008-12-14 03:51:04 as along with 13 people and 2 groups rsaito tonamswish hagechouchin443 suizifish absterga kengg djkt mgaldzic olympos skoch3 epigenetics caseybrown inesdesantiago CHIP Plantandetc
	Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards? [My Copy] Journal of Cellular Biochemistry, Vol. 94, No. 5. (2005), pp. 890-898. by David N. Arnosti, Meghana M. Kulkarni posted to enhancers by raylim on 2008-12-14 03:47:55 as along with 2 people lusk olympos
	Evolution of cis-regulatory sequence and function in Diptera [My Copy] Heredity, Vol. aop, No. current. by P. J. Wittkopp, posted to drosophila enhancers evolution heredity wittkopp by rouault on 2008-10-28 14:45:54 as along with 6 people and 2 groups indigoviolet dpollard adepace emmahe cisevol emptyhb EisenLab cis-regulatory-evolution
	The Evolution of Transcriptional Regulation in Eukaryotes [My Copy] Mol Biol Evol, Vol. 20, No. 9. (1 September 2003), pp. 1377-1419. by Gregory A. Wray, Matthew W. Hahn, Ehab Abouheif, et al.James P. Balhoff, Margaret Pizer, Matthew V. Rockman, Laura A. Romano posted to enhancer enhancers evo-devo evolution review by emmahe on 2008-08-07 14:24:36 as along with 11 people and 5 groups athma provero wrowell ana dpollard adepace nickluscombe anatiferous mimulus_99 cisevol emptyhb structural_bioinformatics Bioinformatics EisenLab EBI-regulation cis-regulatory-evolution
	Expression of zebrafish pax6b in pancreas is regulated by two enhancers containing highly conserved cis-elements bound by PDX1, PBX and PREP factors [My Copy] BMC Developmental Biology, Vol. 8 (16 May 2008), 53. by Francois M. Delporte, Vincent Pasque, Nathalie Devos, et al.Isabelle Manfroid, Marianne L. Voz, Patrick Motte, Frederic Biemar, Joseph A. Martial, Bernard Peers posted to enhancers pax6 regulation by alhufton on 2008-08-04 11:17:57 as
	FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. [My Copy] Cell, Vol. 132, No. 6. (21 March 2008), pp. 958-970. by M. Lupien, J. Eeckhoute, C. A. Meyer, et al.Q. Wang, Y. Zhang, W. Li, J. S. Carroll, X. S. Liu, M. Brown posted to enhancers epigenetics gene_expression by oelemento on 2008-07-27 16:58:20 as along with 1 person dquest
	The vestigial gene product provides a molecular context for the interpretation of signals during the development of the wing in Drosophila [My Copy] Development, Vol. 126, No. 5. (1 March 1999), pp. 913-925. by T. Klein, A. M. Arias posted to drosophila enhancers molecular patterning wg wing_disc wingless by emmahe on 2008-07-07 14:48:10 as
	Enhancer Blocking and Transvection at the Drosophila apterous Locus [My Copy] Genetics, Vol. 178, No. 1. (1 January 2008), pp. 127-143. by Daryl Gohl, Martin Muller, Vincenzo Pirrotta, Markus Affolter, Paul Schedl posted to ap apterous drosophila enhancers gene_expression gene_regulation genetics transvection by emmahe on 2008-01-18 10:30:32 as
	Functional tests of enhancer conservation between distantly related species [My Copy] Development, Vol. 130, No. 21. (1 November 2003), pp. 5133-5142. by Ilya Ruvinsky, Gary Ruvkun posted to enhancers by mikaelhuss on 2008-01-17 06:18:24 as along with 5 people and 2 groups thegoose2 tharris maximilianh cisevol emptyhb C. elegans / WormBase cis-regulatory-evolution
	A rationale for the enhanceosome and other evolutionarily constrained enhancers [My Copy] Current Biology, Vol. 17, No. 22. (20 November 2007), pp. R955-R957. by Dmitri Papatsenko, Mike Levine posted to drosophila enhancers by oelemento on 2007-11-20 17:34:49 as along with 1 person lusk
	Identifying pattern-defined regulatory islands in mammalian genomes [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 24. (12 June 2007), pp. 10116-10121. by Tom H. Cheung, Kristen K. Barthel, Yin L. Kwan, Xuedong Liu posted to enhancers by oelemento on 2007-11-16 00:53:32 as along with 1 person lusk
	Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity [My Copy] Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59. by O. Hallikas, K. Palin, N. Sinjushina, et al.R. Rautiainen, J. Partanen, E. Ukkonen, J. Taipale posted to enhancers mammals by oelemento on 2007-11-05 13:14:37 as along with 16 people and 5 groups absterga xingxu cisstem Terkko kaarsinogen tuck brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel maximilianh heliopais emptyhb Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
	Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura. [My Copy] Genome Biol, Vol. 5, No. 9. (2004) by B. P. Berman, B. D. Pfeiffer, T. R. Laverty, et al.S. L. Salzberg, G. M. Rubin, M. B. Eisen, S. E. Celniker posted to enhancers by nklee on 2007-09-30 23:50:43 as along with 9 people and 3 groups emptyhb cajunsushi mbeisen indigoviolet adepace Stew cisevol maximilianh Auger EisenLab cis-regulatory-evolution Dead 60's
	Tissue-specific regulatory elements in mammalian promoters [My Copy] Mol Syst Biol, Vol. 3 (16 January 2007) by Andrew D. Smith, Pavel Sumazin, Michael Q. Zhang posted to transcriptional-regulation transcription enhancers by dchughes to the group Genetics-of-Gambling on 2007-01-16 11:01:09 as along with 4 people and 1 group rpatward SeungjoonOh heliopais roys G4ID
	A series of ENU-induced single-base substitutions in a long-range cis-element altering Sonic hedgehog expression in the developing mouse limb bud [My Copy] Genomics, Vol. 89, No. 2. (February 2007), pp. 207-214. by Hiroshi Masuya, Hideki Sezutsu, Yoshiyuki Sakuraba, et al.Tomoko Sagai, Masaki Hosoya, Hideki Kaneda, Ikuo Miura, Kimio Kobayashi, Kenta Sumiyama, Aya Shimizu posted to sonic-hedgehog long-range-effects enhancers by dchughes on 2007-01-10 09:33:56 as along with 2 groups G4ID Genetics-of-Gambling
	Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns [My Copy] Genome Res., Vol. 17, No. 1. (1 January 2007), pp. 74-81. by Tae-Young Roh, Gang Wei, Catherine M. Farrell, Keji Zhao posted to chromatin enhancers histone transcriptional-regulation by dchughes on 2007-01-04 10:11:56 as along with 1 person and 2 groups epigenetics G4ID Genetics-of-Gambling

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chromatin	36
acetylation	22
transcription	18
evolution	15
histone	15
methylation	15
genome	13
promoters	13
human	12
h3	10
motif	10
drosophila	8
chip-seq	7
conserved	7
review	7
transcriptional-regulation	7
h3k4me3	6
nucleosome	6
cne	5
conservation	5
epigenetics	5
p300	5
regulatory-elements	5
enhancer	4
expression	4
genomics	4
insulator	4
insulators	4
methods	4
promoter	4
remodeling	4
repressor	4
cancer	3
chd7	3
chip-chip	3
cpg	3
development	3
dna	3
encode	3
era	3
gene	3
gene_expression	3
gene_regulation	3
h2a-z	3
h3k4me1	3
long-range-effects	3
modification	3
mouse	3
p400	3
pax6	3
rat	3
sonic-hedgehog	3
structure	3
t-cells	3
ctcf	2
engrailed	2
evo-devo	2
genes	2
h3k4	2
h3k4me2	2
h3k9	2
h3k9me2	2
hlxb9	2
prediction	2
predictive	2
recombination	2
regulation	2
regulatory-genes	2
research	2
shh	2
silencing	2
sox21	2
vertebrates	2
zebrafish	2
apterous	1
binding	1
cell_types	1
chromatin_factors	1
clip-chip	1
comparative_genomics	1
dna_methylation	1
genetics	1
genomes	1
hematology	1
histone_modifications	1
histones	1
invitro	1
molecular	1
patterning	1
perspective	1
protein	1
spatial-organization	1
tissue-specific	1
transcription_factors	1
transcription_regulation	1
variation	1
wg	1
wing_disc	1
wingless	1
wittkopp	1

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