Tag ensembl [29 articles] Export

Recent papers classified by the tag ensembl.

	Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2739-2740. by Olivier Sand, Morgane Thomas-Chollier, Jacques van Helden posted to web_services ensembl by druvus on 2009-10-12 10:55:25 as along with 4 people inesdesantiago idonaldson natstreet sebastien_vigneau
	Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt [My Copy] Nature Protocols, Vol. 4, No. 8. (23 July 2009), pp. 1184-1191. by Steffen Durinck, Paul T. Spellman, Ewan Birney, Wolfgang Huber posted to r mapping gene ensembl bioinformatics by ericrpaquet on 2009-08-14 04:44:00 as along with 5 people daforerog srp33 cassj frohike natstreet
	Ensembl 2009. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D690-697. by T. J. Hubbard, B. L. Aken, S. Ayling, et al.B. Ballester, K. Beal, E. Bragin, S. Brent, Y. Chen, P. Clapham, L. Clarke, G. Coates, S. Fairley, S. Fitzgerald, J. Fernandez-Banet, L. Gordon, S. Graf, S. Haider, M. Hammond, R. Holland, K. Howe, A. Jenkinson, N. Johnson, A. Kahari, D. Keefe, S. Keenan, R. Kinsella, F. Kokocinski, E. Kulesha, D. Lawson, I. Longden, K. Megy, P. Meidl, B. Overduin, A. Parker, B. Pritchard, D. Rios, M. Schuster, G. Slater, D. Smedley, W. Spooner, G. Spudich, S. Trevanion, A. Vilella, J. Vogel, S. White, S. Wilder, A. Zadissa, E. Birney, F. Cunningham, V. Curwen, R. Durbin, X. M. Fernandez-Suarez, J. Herrero, A. Kasprzyk, G. Proctor, J. Smith, S. Searle, P. Flicek posted to ensembl tjph by timhubbard on 2009-07-13 21:34:22 as along with 10 people taroleo ilyashl idoerg cpwardell jfr kittipat lptolik coela birney nlapalu
	Ensembl 2008. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (13 January 2008) by P. Flicek, B. L. Aken, K. Beal, et al.B. Ballester, M. Caccamo, Y. Chen, L. Clarke, G. Coates, F. Cunningham, T. Cutts, T. Down, S. C. Dyer, T. Eyre, S. Fitzgerald, J. Fernandez-Banet, S. Gräf, S. Haider, M. Hammond, R. Holland, K. L. Howe, K. Howe, N. Johnson, A. Jenkinson, A. Kähäri, D. Keefe, F. Kokocinski, E. Kulesha, D. Lawson, I. Longden, K. Megy, P. Meidl, B. Overduin, A. Parker, B. Pritchard, A. Prlic, S. Rice, D. Rios, M. Schuster, I. Sealy, G. Slater, D. Smedley, G. Spudich, S. Trevanion, A. J. Vilella, J. Vogel, S. White, M. Wood, E. Birney, T. Cox, V. Curwen, R. Durbin, X. M. Fernandez-Suarez, J. Herrero, T. J. Hubbard, A. Kasprzyk, G. Proctor, J. Smith, A. Ureta-Vidal, S. Searle posted to ensembl tjph by timhubbard on 2009-07-13 21:29:37 as along with 15 people thegoose2 ilyashl semin brdwilde nlapalu raistrick guhjy hpiwowar jandot flexer daed dullhunk skumagai tharris janasont
	Ensembl 2007. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by T. J. Hubbard, B. L. Aken, K. Beal, et al.B. Ballester, M. Caccamo, Y. Chen, L. Clarke, G. Coates, F. Cunningham, T. Cutts, T. Down, S. C. Dyer, S. Fitzgerald, J. Fernandez-Banet, S. Graf, S. Haider, M. Hammond, J. Herrero, R. Holland, K. Howe, K. Howe, N. Johnson, A. Kahari, D. Keefe, F. Kokocinski, E. Kulesha, D. Lawson, I. Longden, C. Melsopp, K. Megy, P. Meidl, B. Ouverdin, A. Parker, A. Prlic, S. Rice, D. Rios, M. Schuster, I. Sealy, J. Severin, G. Slater, D. Smedley, G. Spudich, S. Trevanion, A. Vilella, J. Vogel, S. White, M. Wood, T. Cox, V. Curwen, R. Durbin, X. M. Fernandez-Suarez, P. Flicek, A. Kasprzyk, G. Proctor, S. Searle, J. Smith, A. Ureta-Vidal, E. Birney posted to ensembl tjph by timhubbard on 2009-07-13 21:24:04 as along with 12 people and 2 groups gjuggler ilyashl kuhn dullhunk massivemayhem incovoma Garamonfok asddd loopback007 flexer skumagai kcrawlik References for 3DSim paper Cancer_Stem_Cells
	Ensembl 2006. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006) by E. Birney, D. Andrews, M. Caccamo, et al.Y. Chen, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, X. M. Fernandez-Suarez, P. Flicek, S. Gräf, M. Hammond, J. Herrero, K. Howe, V. Iyer, K. Jekosch, A. Kähäri, A. Kasprzyk, D. Keefe, F. Kokocinski, E. Kulesha, D. London, I. Longden, C. Melsopp, P. Meidl, B. Overduin, A. Parker, G. Proctor, A. Prlic, M. Rae, D. Rios, S. Redmond, M. Schuster, I. Sealy, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, A. Stabenau, J. Stalker, S. Trevanion, A. Ureta-Vidal, J. Vogel, S. White, C. Woodwark, T. J. Hubbard posted to ensembl tjph by timhubbard on 2009-07-13 08:51:55 as along with 10 people schwalb aalibes miguel bicko chad_davis dullhunk duartemolha fisherp frohike flexer
	Ensembl 2005. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005) by T. Hubbard, D. Andrews, M. Caccamo, et al.G. Cameron, Y. Chen, M. Clamp, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, X. M. Fernandez-Suarez, J. Gilbert, M. Hammond, J. Herrero, H. Hotz, K. Howe, V. Iyer, K. Jekosch, A. Kahari, A. Kasprzyk, D. Keefe, S. Keenan, F. Kokocinsci, D. London, I. Longden, G. McVicker, C. Melsopp, P. Meidl, S. Potter, G. Proctor, M. Rae, D. Rios, M. Schuster, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, W. Spooner, A. Stabenau, J. Stalker, R. Storey, S. Trevanion, A. Ureta-Vidal, J. Vogel, S. White, C. Woodwark, E. Birney posted to ensembl tjph by timhubbard on 2009-07-13 08:48:35 as along with 5 people and 1 group raizada Cortel pcahan1 chad_davis brant Raizada-Lab
	An overview of Ensembl. [My Copy] Genome research, Vol. 14, No. 5. (May 2004), pp. 925-928. by E. Birney, T. D. Andrews, P. Bevan, et al.M. Caccamo, Y. Chen, L. Clarke, G. Coates, J. Cuff, V. Curwen, T. Cutts, T. Down, E. Eyras, X. M. Fernandez-Suarez, P. Gane, B. Gibbins, J. Gilbert, M. Hammond, H. R. Hotz, V. Iyer, K. Jekosch, A. Kahari, A. Kasprzyk, D. Keefe, S. Keenan, H. Lehvaslaiho, G. McVicker, C. Melsopp, P. Meidl, E. Mongin, R. Pettett, S. Potter, G. Proctor, M. Rae, S. Searle, G. Slater, D. Smedley, J. Smith, W. Spooner, A. Stabenau, J. Stalker, R. Storey, A. Ureta-Vidal, K. C. Woodwark, G. Cameron, R. Durbin, A. Cox, T. Hubbard, M. Clamp posted to ensembl tjph by timhubbard on 2009-07-13 08:43:23 as along with 8 people and 1 group ilyashl dragonrez chad_davis indigoviolet dullhunk incovoma Nilza mcgannd EisenLab
	Ensembl 2004. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by E. Birney, D. Andrews, P. Bevan, et al.M. Caccamo, G. Cameron, Y. Chen, L. Clarke, G. Coates, T. Cox, J. Cuff, V. Curwen, T. Cutts, T. Down, R. Durbin, E. Eyras, X. M. Fernandez-Suarez, P. Gane, B. Gibbins, J. Gilbert, M. Hammond, H. Hotz, V. Iyer, A. Kahari, K. Jekosch, A. Kasprzyk, D. Keefe, S. Keenan, H. Lehvaslaiho, G. McVicker, C. Melsopp, P. Meidl, E. Mongin, R. Pettett, S. Potter, G. Proctor, M. Rae, S. Searle, G. Slater, D. Smedley, J. Smith, W. Spooner, A. Stabenau, J. Stalker, R. Storey, A. Ureta-Vidal, C. Woodwark, M. Clamp, T. Hubbard posted to ensembl tjph by timhubbard on 2009-07-13 08:39:07 as along with 1 person brdwilde
	Ensembl 2002: accommodating comparative genomics [My Copy] Nucl. Acids Res., Vol. 31, No. 1. (1 January 2003), pp. 38-42. by M. Clamp, D. Andrews, D. Barker, et al.P. Bevan, G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, T. Hubbard, A. Kasprzyk, D. Keefe, H. Lehvaslaiho, V. Iyer, C. Melsopp, E. Mongin, R. Pettett, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, E. Birney posted to tjph ensembl by timhubbard on 2009-07-13 08:34:50 as along with 1 person stharward
	The Ensembl genome database project. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 38-41. by T. Hubbard, D. Barker, E. Birney, et al.G. Cameron, Y. Chen, L. Clark, T. Cox, J. Cuff, V. Curwen, T. Down, R. Durbin, E. Eyras, J. Gilbert, M. Hammond, L. Huminiecki, A. Kasprzyk, H. Lehvaslaiho, P. Lijnzaad, C. Melsopp, E. Mongin, R. Pettett, M. Pocock, S. Potter, A. Rust, E. Schmidt, S. Searle, G. Slater, J. Smith, W. Spooner, A. Stabenau, J. Stalker, E. Stupka, A. Ureta-Vidal, I. Vastrik, M. Clamp posted to tjph ensembl by timhubbard on 2009-07-13 07:37:04 as along with 7 people and 1 group niallhaslam brdwilde incovoma kynn raylim CitoJam rvosa FAB-lab
	The Ensembl Analysis Pipeline [My Copy] Genome Research, Vol. 14, No. 5. (May 2004), pp. 934-941. by Simon C. Potter, Laura Clarke, Val Curwen, et al.Stephen Keenan, Emmanuel Mongin, Stephen M. Searle, Arne Stabenau, Roy Storey, Michele Clamp posted to annotation das dna dna_design ensembl by Vincent_Rouilly on 2009-07-02 09:12:13 as
	BioMart Central Portal--unified access to biological data. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W23-27. by Syed Haider, Benoit Ballester, Damian Smedley, Junjun Zhang, Peter Rice, Arek Kasprzyk posted to biomart database ensembl genomics integration webserver by neils on 2009-05-08 00:49:41 as along with 15 people brianb sjcockell n00c stharward VGreiff nuin joergkurtwegner natstreet druvus dullhunk H-Arrietaumn Zephyrus guhjy daforerog renatomilani
	Understanding genome browsing. [My Copy] Nature biotechnology, Vol. 27, No. 2. (February 2009), pp. 153-155. by Melissa S. Cline, W. James Kent posted to ensembl by dullhunk on 2009-02-12 13:26:54 as along with 6 people daforerog coela ptrobajo druvus psique rdiaz
	The Bioperl Toolkit: Perl Modules for the Life Sciences [My Copy] Genome Res., Vol. 12, No. 10. (1 October 2002), pp. 1611-1618. by Jason E. Stajich, David Block, Kris Boulez, et al.Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehvaslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, Ewan Birney posted to bioinformatics bioperl ensembl ncbi by brdwilde on 2008-12-31 13:23:44 as along with 26 people and 2 groups ludaesch jsatkosk kiekyon Thaverkamp Cortel daforerog GustavoLacerda krapnik jmeppley chad_davis rvosa indigoviolet skhadar dullhunk dgront stajich noby incovoma glycine tyrosine threonine valine nklee hpaces sekmi ninch EisenLab FAB-lab
	BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis [My Copy] Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3439-3440. by Steffen Durinck, Yves Moreau, Arek Kasprzyk, et al.Sean Davis, Bart De Moor, Alvis Brazma, Wolfgang Huber posted to bioconductor bioinformatics biomart ensembl r by brdwilde on 2008-12-30 16:01:11 as along with 10 people jfr taroleo paszkows renatomilani druvus wenhui dullhunk asddd natstreet guhjy
	Petabyte-scale innovations at the European Nucleotide Archive. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D19-25. by Guy Cochrane, Ruth Akhtar, James Bonfield, et al.Lawrence Bower, Fehmi Demiralp, Nadeem Faruque, Richard Gibson, Gemma Hoad, Tim Hubbard, Christopher Hunter, Mikyung Jang, Szilveszter Juhos, Rasko Leinonen, Steven Leonard, Quan Lin, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Sheila Plaister, Rajesh Radhakrishnan, Stephen Robinson, Siamak Sobhany, Petra Ten T. Hoopen, Robert Vaughan, Vadim Zalunin, Ewan Birney posted to archive database embl embl-bank ensembl nucleotide sequence trace by hpm on 2008-12-24 16:45:05 as along with 6 people and 1 group agbiotec PabloMarin timhubbard coela birney dullhunk Journal picks
	Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (26 January 2008), gkm1018. by G. Cochrane, R. Akhtar, P. Aldebert, et al.N. Althorpe, A. Baldwin, K. Bates, S. Bhattacharyya, J. Bonfield, L. Bower, P. Browne, M. Castro, T. Cox, F. Demiralp, R. Eberhardt, N. Faruque, G. Hoad, M. Jang, T. Kulikova, A. Labarga, R. Leinonen, S. Leonard, Q. Lin, R. Lopez, D. Lorenc, H. McWilliam, G. Mukherjee, F. Nardone, S. Plaister, S. Robinson, S. Sobhany, R. Vaughan, D. Wu, W. Zhu, R. Apweiler, T. Hubbard, E. Birney posted to archive embl embl-bank ensembl trace by hpm on 2008-12-24 16:39:30 as along with 3 people timhubbard taroleo alanrw
	EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates [My Copy] Genome Research, Vol. 19, No. 2. (24 February 2009), pp. 327-335. by Albert J. Vilella, Jessica Severin, Abel Ureta-Vidal, Li Heng, Richard Durbin, Ewan Birney posted to comparative_genomics duplication ensembl ensemblcompara evolution gene_tree phylogenetics tree vertebrate by stajich to the group Mycology on 2008-12-01 18:58:31 as along with 7 people and 1 group Keywan druvus operon alpae isimpson birney gjuggler Jarman Lab
	Genome-wide nucleotide-level mammalian ancestor reconstruction [My Copy] Genome Research, Vol. 18, No. 11. (10 November 2008), pp. 1829-1843. by Benedict Paten, Javier Herrero, Stephen Fitzgerald, et al.Kathryn Beal, Paul Flicek, Ian Holmes, Ewan Birney posted to ancestor ensembl evolution multiple-alignment ortheus reconstruction sequence by rschulz on 2008-11-26 16:20:09 as along with 6 people gdb ilyashl mhamada Neeperando gjuggler bpcusack
	Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs. [My Copy] Genome research, Vol. 18, No. 11. (10 November 2008), pp. 1814-1828. by Benedict Paten, Javier Herrero, Kathryn Beal, Stephen Fitzgerald, Ewan Birney posted to enredo ensembl multiple-alignment multiz pecan by rschulz on 2008-11-26 16:18:12 as along with 8 people gdb mhamada natstreet druvus davfre treangen Neeperando gjuggler
	Advanced Genomic Data Mining [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000121. by Xosé M. Fernández-Suárez, Ewan Birney posted to bioconductor biomart data-mining database ensembl by dullhunk on 2008-09-26 20:22:15 as along with 19 people and 1 group Zephyrus mhamada daforerog kshameer jfr guhjy taguchi giovenko inesdesantiago usagi-kirin fgibson cisevol rdiaz aramesh2 sunhwan druvus mitko jandot jameswasmuth BergmanLab
	ESTGenes: Alternative Splicing From ESTs in Ensembl [My Copy] Genome Research, Vol. 14, No. 5. (May 2004), pp. 976-987. by Eduardo Eyras, Mario Caccamo, Val Curwen, Michele Clamp posted to algorithm bioinformatics ensembl est transcript by sebastien_vigneau on 2008-07-23 21:58:58 as along with 2 people orzenil Cortel
	Shopping in the genome market with EnsMart. [My Copy] Brief Bioinform, Vol. 4, No. 3. (September 2003), pp. 292-296. by D. Gilbert posted to bioinformatics bio-tools data-mining ensembl genome genomics java perl software by asddd on 2008-02-28 22:20:54 as along with 1 person incovoma
	EnsMart: A Generic System for Fast and Flexible Access to Biological Data [My Copy] Genome Res., Vol. 14, No. 1. (1 January 2004), pp. 160-169. by Arek Kasprzyk, Damian Keefe, Damian Smedley, et al.Darin London, William Spooner, Craig Melsopp, Martin Hammond, Philippe Rocca-Serra, Tony Cox, Ewan Birney posted to bioinformatics bio-tools data-mining ensembl genome genomics java perl software by asddd on 2008-02-28 22:18:32 as along with 4 people daforerog agbiotec incovoma kynn
	The Protein Identifier Cross-Reference (PICR) service: reconciling protein identifiers across multiple source databases [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Richard Cote, Philip Jones, Lennart Martens, et al.Samuel Kerrien, Florian Reisinger, Quan Lin, Rasko Leinonen, Rolf Apweiler, Henning Hermjakob posted to cross-reference database ensembl protein swissprot uniprot webservices by niallhaslam on 2008-02-21 15:24:30 as along with 11 people robert druvus whoare chad_davis guhjy dullhunk antonkratz barriot dansullivanblk tny kynn
	Biological database design and implementation [My Copy] Briefings in Bioinformatics, Vol. 5, No. 1. (1 January 2004), pp. 31-38. by E. Birney, M. Clamp posted to ensembl by dullhunk on 2007-11-02 18:21:28 as along with 1 person mtaschuk
	Genome browsing with Ensembl: a practical overview. [My Copy] Briefings in functional genomics & proteomics, Vol. 6, No. 3. (29 September 2007), pp. 202-219. by G. Spudich, X. M. Fernández-Suárez, E. Birney posted to db ensembl genomics by guhjy on 2007-11-01 09:22:07 as along with 1 person Ayest
	Expressionview: visualization of quantitative trait loci and gene-expression data in Ensembl. [My Copy] Genome Biol, Vol. 4, No. 11. (2003) by G. Fischer, S. M. Ibrahim, G. A. Brockmann, et al.J. Pahnke, E. Bartocci, H. J. Thiesen, P. Serrano-Fernández, S. Möller posted to ensembl gene microarray qtl by fisherp on 2006-08-07 12:06:42 as along with 1 person natstreet

Note: You may cite this page as: http://www.citeulike.org/tag/ensembl

bioinformatics	11
database	10
genome	9
tjph	9
annotation	6
genomics	6
software	5
data-mining	4
sequence	4
bio-tools	3
biomart	3
evolution	3
genome-browser	3
java	3
perl	3
2008	2
archive	2
bioconductor	2
biology	2
comparative_genomics	2
computational	2
databases	2
dna	2
duplication	2
embl	2
embl-bank	2
ensemblcompara	2
gene	2
gene_tree	2
integration	2
molevoltestis	2
multiple-alignment	2
pecan	2
phylogenetics	2
pipeline	2
protein	2
r	2
trace	2
tree	2
vertebrate	2
2007	1
algorithm	1
analysis	1
ancestor	1
bioinformatic	1
bioperl	1
cross-reference	1
das	1
data-analysis	1
db	1
dna_design	1
enredo	1
est	1
genetic	1
genome-aligment	1
genome_database	1
homology-map	1
human	1
humans	1
information	1
internet	1
management	1
mapping	1
microarray	1
motif	1
multiz	1
ncbi	1
nucleotide	1
number_of_genes	1
ortheus	1
pairwise	1
pattern	1
phylogeny	1
qtl	1
reconstruction	1
retrieval	1
retrieve	1
storage	1
swissprot	1
systems	1
thesis	1
tool	1
transcript	1
uniprot	1
web_services	1
webserver	1
webservices	1
word	1

Tag ensembl [29 articles] Export

Related Tags