Tag enzyme [at least 200 articles] Export

Recent papers classified by the tag enzyme.

	Metabolite and reaction inference based on enzyme specificities [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2975-2982. by M. J. L. de Groot, R. J. P. van Berlo, W. A. van Winden, P. J. T. Verheijen, M. J. T. Reinders, D. de Ridder posted to specificity similarity reaction promiscuity metabolic_networks metaboli enzyme chemical_fingerprints by pablocarb on 2009-11-04 17:31:21 as
	Occurrence of a putative ancient-like isomerase involved in histidine and tryptophan biosynthesis. [My Copy] EMBO reports, Vol. 4, No. 3. (March 2003), pp. 296-300. by Francisco Barona-Gómez, David A. Hodgson posted to promiscuity isomerase evolution enzyme barrel by pablocarb on 2009-11-03 11:17:29 as
	Exploitation of binding energy for catalysis and design [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1300-1304. by Summer B. Thyme, Jordan Jarjour, Ryo Takeuchi, et al.James J. Havranek, Justin Ashworth, Andrew M. Scharenberg, Barry L. Stoddard, David Baker posted to enzyme energy efficiency catalysis binding by pablocarb on 2009-10-29 10:56:46 as along with 1 person yse
	Investigating the robustness of the classical enzyme kinetic equations in small intracellular compartments [My Copy] (23 Oct 2009) by Ramon Grima posted to stochastic robustness noise kinetics intracellular enzyme biophysics by jjray on 2009-10-26 23:46:26 as along with 1 person apocapoc
	Histone modifying enzymes: structures, mechanisms, and specificities. [My Copy] Biochimica et biophysica acta, Vol. 1789, No. 1. (January 2009), pp. 58-68. by Ronen Marmorstein, Raymond C. Trievel posted to histone_modification histone_code enzyme by RyuOgawa on 2009-10-25 13:00:15 as along with 1 person guhjy
	Solvent Composition and Viscosity Effects on the Kinetics of CO Binding to Horse Myoglobin† [My Copy] Biochemistry, Vol. 37, No. 2. (1 January 1998), pp. 717-733. by Thomas Kleinert, Wolfgang Doster, Harald Leyser, Winfried Petry, Veronika Schwarz, Marcus Settles posted to paper1 kinetics enzyme by whitead to the group Jiang Research Group on 2009-10-18 18:48:01 as
	Acid phosphatases [My Copy] Mol Pathol, Vol. 55, No. 2. (1 April 2002), pp. 65-72. by H. Bull, P. G. Murray, D. Thomas, A. M. Fraser, P. N. Nelson posted to paper enzyme bio by gulnaz1 on 2009-10-13 00:03:16 as
	Entrapment of Enzymes and Carbon Nanotubes in Biologically Synthesized Silica: Glucose Oxidase-Catalyzed Direct Electron Transfer [My Copy] Small, Vol. 4, No. 3. (2008), pp. 357-364. by Dmitri Ivnitski, Kateryna Artyushkova, Rosalba A. Rincón, Plamen Atanassov, Heather R. Luckarift, Glenn R. Johnson posted to sol_gel enzyme carbon_nanotubes by wenhaosparty on 2009-10-12 06:08:17 as
	Natural history as a predictor of protein evolvability [My Copy] Protein Engineering, Design and Selection, Vol. 19, No. 10. (1 October 2006), pp. 439-442. by Taryn L. O'Loughlin, Wayne M. Patrick, Ichiro Matsumura posted to evolution enzyme_evolution enzyme by pablocarb on 2009-10-08 14:20:21 as along with 1 person and 2 groups marcius BioinfoCIPF SGU-CIPF
	Is protein classification necessary? Toward alternative approaches to function annotation [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (5 June 2009), pp. 363-368. by Donald Petrey, Barry Honig posted to structure protein inactive enzyme classification by robfsouza on 2009-10-07 17:07:31 as along with 6 people and 4 groups davidalee sobolevnrm janasont idoerg fgibson barry Orengo Group Journal Picks baker-group structural_bioinformatics Bioinformatics
	SCOPEC: a database of protein catalytic domains [My Copy] Bioinformatics, Vol. 20, No. suppl_1. (4 August 2004), pp. i130-136. by Richard A. George, Ruth V. Spriggs, Janet M. Thornton, Bissan Al-Lazikani, Mark B. Swindells posted to structure site protein inactive enzyme catalytic by robfsouza on 2009-10-07 17:00:53 as along with 5 people ucbcjbm pablocarb shung gbart tny
	Catalytic Mechanism of DNA Backbone Cleavage by the Restriction Enzyme EcoRV: A Quantum Mechanical/Molecular Mechanical Analysis [My Copy] Biochemistry, Vol. 48, No. 38. (29 September 2009), pp. 9061-9075. by Petra Imhof, Stefan Fischer, Jeremy C. Smith posted to qmmm enzyme by jmparks on 2009-10-06 18:58:02 as
	Synthetic substrate for application in both high and low throughput assays for botulinum neurotoxin B protease inhibitors [My Copy] Bioorganic & Medicinal Chemistry Letters, Vol. 19, No. 20. (15 October 2009), pp. 5848-5850. by Nicholas T. Salzameda, Joseph T. Barbieri, Kim D. Janda posted to enzyme by mcleath2 on 2009-10-05 14:10:44 as
	Standard assays do not predict the efficiency of commercial cellulase preparations towards plant materials. [My Copy] Biotechnology and bioengineering, Vol. 93, No. 1. (5 January 2006), pp. 56-63. by Mirjam A. Kabel, Marc J. van der Maarel, Gert Klip, Alphons G. Voragen, Henk A. Schols posted to food enzyme by biblio24 on 2009-10-05 13:49:47 as
	Enzyme-Based Logic Systems for Information Processing [My Copy] ArXiv e-prints (1 October 2009) by E. Katz, V. Privman posted to information_theory enzyme biocomputing by marinari on 2009-10-05 08:49:49 as along with 1 person amozeika
	Molecular paleoscience: systems biology from the past. [My Copy] Advances in enzymology and related areas of molecular biology, Vol. 75 (2007) by Steven A. Benner, Slim O. Sassi, Eric A. Gaucher posted to systems_biology paleogenetics evolution enzyme by pablocarb on 2009-10-04 20:06:07 as along with 1 person sbottani
	Mechanism of Hg−C Protonolysis in the Organomercurial Lyase MerB [My Copy] Journal of the American Chemical Society, Vol. 131, No. 37. (23 September 2009), pp. 13278-13285. by Jerry M. Parks, Hong Guo, Cory Momany, et al.Liyuan Liang, Susan M. Miller, Anne O. Summers, Jeremy C. Smith posted to mercury mer mechanism enzyme dft by jmparks on 2009-10-04 15:08:58 as along with 1 person r2s2
	How Protein Stability and New Functions Trade Off [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (29 February 2008), e1000002. by Nobuhiko Tokuriki, Francois Stricher, Luis Serrano, Dan S. Tawfik posted to stability specificity protein promiscuity mutations function foldx enzyme energy catalytic affinity by pablocarb on 2009-09-30 15:59:00 as along with 4 people GermanErlenkamp pinney orr aalibes
	DIVERGENT EVOLUTION OF ENZYMATIC FUNCTION: Mechanistically Diverse Superfamilies and Functionally Distinct Suprafamilies [My Copy] Annual Review of Biochemistry, Vol. 70, No. 1. (2001), pp. 209-246. by John A. Gerlt, Patricia C. Babbitt posted to superfamily evolution enzyme divergent_evolution directed_evolution by pablocarb on 2009-09-30 14:55:47 as along with 3 people and 2 groups ana tny robert structural_bioinformatics Bioinformatics
	Evolution of Enzymatic Activities in the Enolase Superfamily: l-Fuconate Dehydratase from Xanthomonas campestris†,‡ [My Copy] Biochemistry, Vol. 45, No. 49. (1 December 2006), pp. 14582-14597. by Wen S. Yew, Alexander A. Fedorov, Elena V. Fedorov, et al.John F. Rakus, Richard W. Pierce, Steven C. Almo, John A. Gerlt posted to superfamily scaffold evolution enzyme barrel by pablocarb on 2009-09-30 12:54:01 as
	Catalytic Versatility, Stability, and Evolution of the (βα)8-Barrel Enzyme Fold [My Copy] Chemical Reviews, Vol. 105, No. 11. (1 November 2005), pp. 4038-4055. by Reinhard Sterner, Birte Hocker posted to scaffold evolution enzyme catalytic barrel by pablocarb on 2009-09-30 11:57:28 as
	Inactive Enzyme-homologues Find New Function in Regulatory Processes [My Copy] Journal of Molecular Biology, Vol. 340, No. 3. (09 July 2004), pp. 399-404. by Birgit Pils, Jörg Schultz posted to protein inactive fold evolution enzyme by robfsouza on 2009-09-30 00:55:50 as along with 3 people tny jwm Jporci
	Predicting substrates by docking high-energy intermediates to enzyme structures. [My Copy] J Am Chem Soc, Vol. 128, No. 49. (13 December 2006), pp. 15882-15891. by J. C. Hermann, E. Ghanem, Y. Li, F. M. Raushel, J. J. Irwin, B. K. Shoichet posted to structure protein enzyme docking 2006 by klexa on 2009-09-29 22:56:43 as along with 1 person schlauchi
	The role of quaternary structure in ([small beta]/[small alpha])8-barrel proteins: evolutionary happenstance or a higher level of structure-function relationships? [My Copy] Org. Biomol. Chem., Vol. 7, No. 5. (2009), pp. 833-839. by Sean R. A. Devenish, Juliet A. Gerrard posted to strands scaffold quaternary_structure evolution enzyme beta barrel by pablocarb on 2009-09-29 21:15:53 as
	Evolution of a Novel Phenolic Pathway for Pollen Development [My Copy] Science, Vol. 325, No. 5948. (25 September 2009), pp. 1688-1692. by Michiyo Matsuno, Vincent Compagnon, Guillaume A. Schoch, et al.Martine Schmitt, Delphine Debayle, Jean-Etienne Bassard, Brigitte Pollet, Alain Hehn, Dimitri Heintz, Pascaline Ullmann, Catherine Lapierre, Francois Bernier, Jurgen Ehlting, Daniele Werck-Reichhart posted to protein metabolic_networks evolution enzyme biology by marcio on 2009-09-29 20:30:10 as along with 1 person roys
	Pathway evolution, structurally speaking. [My Copy] Current opinion in structural biology, Vol. 12, No. 3. (June 2002), pp. 374-382. by Stuart C. Rison, Janet M. Thornton posted to pathway metabolism evolution enzyme by pablocarb on 2009-09-23 14:30:55 as along with 4 people kuhn alexg eweaver bluto
	Evolution of enzymes and pathways for the biosynthesis of cofactors. [My Copy] Natural product reports, Vol. 24, No. 5. (October 2007), pp. 972-987. by Gemma L. Holliday, Janet M. Thornton, Andrée Marquet, et al.Alison G. Smith, Fabrice Rébeillé, Ralf Mendel, Heidi L. Schubert, Andrew D. Lawrence, Martin J. Warren posted to pathway evolution enzyme cofactor biosynthesis by pablocarb on 2009-09-23 14:29:05 as along with 2 people grottenolm gemmalholliday
	Free energy requirement for domain movement of an enzyme. [My Copy] The Journal of biological chemistry, Vol. 275, No. 25. (23 June 2000), pp. 18939-18945. by J. Ishijima, T. Nakai, S. Kawaguchi, K. Hirotsu, S. Kuramitsu posted to enzyme-promis-paper enzyme dynamics by pablocarb on 2009-09-22 10:04:37 as along with 1 person nickolay
	The Enolase Superfamily: A General Strategy for Enzyme-Catalyzed Abstraction of the α-Protons of Carboxylic Acids† [My Copy] Biochemistry, Vol. 35, No. 51. (1 January 1996), pp. 16489-16501. by Patricia C. Babbitt, Miriam S. Hasson, Joseph E. Wedekind, et al.David R. J. Palmer, William C. Barrett, George H. Reed, Ivan Rayment, Dagmar Ringe, George L. Kenyon, John A. Gerlt posted to evolution enzyme-promis-paper enzyme catalytic by pablocarb on 2009-09-22 09:42:00 as along with 1 person and 1 group ThomasKipper Molecular Enzymetechnology and Biochemistry (AG Siebers)
	Resurrecting the Ancestral Enzymatic Role of a Modulatory Subunit [My Copy] Journal of Biological Chemistry, Vol. 280, No. 11. (18 March 2005), pp. 10189-10195. by Miguel A. Ballicora, Jennifer R. Dubay, Claire H. Devillers, Jack Preiss posted to reconstruction inactive evolution enzyme domain character ancestral by robfsouza on 2009-09-21 16:50:34 as along with 2 people and 1 group matzke nknii TCR_Signaling
	AAA+: A Class of Chaperone-Like ATPases Associated with the Assembly, Operation, and Disassembly of Protein Complexes [My Copy] Genome Research, Vol. 9, No. 1. (1 January 1999), pp. 27-43. by Andrew F. Neuwald, L. Aravind, John L. Spouge, Eugene V. Koonin posted to superfamily inactive enzyme chaperone atpase aravind by robfsouza on 2009-09-18 23:31:18 as along with 1 person leemary4
	Apoptotic Molecular Machinery: Vastly Increased Complexity in Vertebrates Revealed by Genome Comparisons [My Copy] Science, Vol. 291, No. 5507. (16 February 2001), pp. 1279-1284. by L. Aravind, Vishva M. Dixit, Eugene V. Koonin posted to vertebrates inactive evolution enzyme aravind apoptosis by robfsouza on 2009-09-18 23:28:19 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Phosphoesterase domains associated with DNA polymerases of diverse origins [My Copy] Nucl. Acids Res., Vol. 26, No. 16. (15 August 1998), pp. 3746-3752. by L. Aravind, E. V. Koonin posted to polymerase inactive evolution enzyme dna aravind by robfsouza on 2009-09-18 23:27:35 as
	Genome of the Extremely Radiation-Resistant Bacterium Deinococcus radiodurans Viewed from the Perspective of Comparative Genomics [My Copy] Microbiol. Mol. Biol. Rev., Vol. 65, No. 1. (1 March 2001), pp. 44-79. by Kira S. Makarova, L. Aravind, Yuri I. Wolf, et al.Roman L. Tatusov, Kenneth W. Minton, Eugene V. Koonin, Michael J. Daly posted to sequence inactive genome enzyme aravind by robfsouza on 2009-09-18 23:23:24 as along with 1 person and 1 group beatrizfernandez Microbial-Ecology
	Complete Genome Sequence of the Apicomplexan, Cryptosporidium parvum [My Copy] Science, Vol. 304, No. 5669. (16 April 2004), pp. 441-445. by Mitchell S. Abrahamsen, Thomas J. Templeton, Shinichiro Enomoto, et al.Juan E. Abrahante, Guan Zhu, Cheryl A. Lancto, Mingqi Deng, Chang Liu, Giovanni Widmer, Saul Tzipori, Gregory A. Buck, Ping Xu, Alan T. Bankier, Paul H. Dear, Bernard A. Konfortov, Helen F. Spriggs, Lakshminarayan Iyer, Vivek Anantharaman, L. Aravind, Vivek Kapur posted to sequence inactive genome enzyme aravind by robfsouza on 2009-09-18 23:21:49 as along with 2 people Cortel shung
	Eukaryote-specific Domains in Translation Initiation Factors: Implications for Translation Regulation and Evolution of the Translation System [My Copy] Genome Research, Vol. 10, No. 8. (1 August 2000), pp. 1172-1184. by L. Aravind, Eugene V. Koonin posted to translation regulation inactive factor evolution eukaryote enzyme aravind by robfsouza on 2009-09-18 23:20:10 as
	Differential Action of Natural Selection on the N and C-terminal Domains of 2′-5′ Oligoadenylate Synthetases and the Potential Nuclease Function of the C-terminal Domain [My Copy] Journal of Molecular Biology, Vol. 326, No. 5. (07 March 2003), pp. 1449-1461. by Igor B. Rogozin, L. Aravind, Eugene V. Koonin posted to selection inactive evolution enzyme aravind by robfsouza on 2009-09-18 23:15:11 as
	The catalytic domains of thiamine triphosphatase and CyaB-like adenylyl cyclase define a novel superfamily of domains that bind organic phosphates [My Copy] BMC Genomics, Vol. 3, No. 1. (2002), 33. by Lakshminarayan Iyer, L. Aravind posted to superfamily protein inactive fold enzyme domain aravind by robfsouza on 2009-09-18 23:09:50 as
	The domains of death: evolution of the apoptosis machinery [My Copy] Trends in Biochemical Sciences, Vol. 24, No. 2. (1 February 1999), pp. 47-53. by L. Aravind posted to inactive enzyme domain aravind apoptosis by robfsouza on 2009-09-18 23:06:14 as
	Diversification of Catalytic Activities and Ligand Interactions in the Protein Fold Shared by the Sugar Isomerases, eIF2B, DeoR Transcription Factors, Acyl-CoA Transferases and Methenyltetrahydrofolate Synthetase [My Copy] Journal of Molecular Biology, Vol. 356, No. 3. (24 February 2006), pp. 823-842. by Vivek Anantharaman, L. Aravind posted to protein inactive fold enzyme carbohydrate aravind by robfsouza on 2009-09-18 23:04:56 as along with 1 person tny
	Anatomy of the E2 ligase fold: Implications for enzymology and evolution of ubiquitin/Ub-like protein conjugation [My Copy] Journal of Structural Biology, Vol. 162, No. 2. (May 2008), pp. 205-218. by A. Burroughs, M. Jaffee, L. Iyer, L. Aravind posted to ubiquitin inactive fold enzyme aravind by robfsouza on 2009-09-18 22:58:34 as
	Comparative Genomics of Protists: New Insights into the Evolution of Eukaryotic Signal Transduction and Gene Regulation* [My Copy] Annual Review of Microbiology, Vol. 61, No. 1. (2007), pp. 453-475. by Vivek Anantharaman, Lakshminarayan M. Iyer, L. Aravind posted to transduction signal regulation inactive gene expression evolution enzyme aravind by robfsouza on 2009-09-18 22:56:09 as along with 1 person cmzmasek
	Evolutionary Genomics of the HAD Superfamily: Understanding the Structural Adaptations and Catalytic Diversity in a Superfamily of Phosphoesterases and Allied Enzymes [My Copy] Journal of Molecular Biology, Vol. 361, No. 5. (01 September 2006), pp. 1003-1034. by A. Maxwell Burroughs, Karen N. Allen, Debra Dunaway-Mariano, L. Aravind posted to superfamily protein inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:54:02 as along with 2 people tny christiw
	DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history [My Copy] Nucl. Acids Res., Vol. 27, No. 7. (1 April 1999), pp. 1609-1618. by L. Aravind, E. V. Koonin posted to superfamily polymerase inactive evolution enzyme dna aravind by robfsouza on 2009-09-18 22:48:32 as
	The prokaryotic antecedents of the ubiquitin-signaling system and the early evolution of ubiquitin-like beta-grasp domains [My Copy] Genome Biology, Vol. 7, No. 7. (19 July 2006), R60. by Lakshminarayan Iyer, A. Maxwell Burroughs, L. Aravind posted to ubiquitin protein prokaryotes inactive fold evolution enzyme aravind by robfsouza on 2009-09-18 22:43:56 as
	Novel Families of Putative Protein Kinases in Bacteria and Archaea: Evolution of the âEukaryoticâ Protein Kinase Superfamily [My Copy] Genome Research, Vol. 8, No. 10. (1 October 1998), pp. 1038-1047. by Christopher J. Leonard, L. Aravind, Eugene V. Koonin posted to superfamily protein kinase inactive fold enzyme aravind by robfsouza on 2009-09-18 22:42:18 as along with 3 people and 1 group anuragsethi thegoose2 tharris C. elegans / WormBase
	The X-ray crystallographic structure and activity analysis of a <I>Pseudomonas-</I>specific subfamily of the HAD enzyme superfamily evidences a novel biochemical function [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 70, No. 1. (2008), pp. 197-207. by Ezra Peisach, Liangbing Wang, A. Maxwell Burroughs, L. Aravind, Debra Dunaway-Mariano, Karen N. Allen posted to structure protein inactive enzyme aravind by robfsouza on 2009-09-18 22:33:22 as
	Quod erat demonstrandum? The mystery of experimental validation of apparently erroneous computational analyses of protein sequences [My Copy] Genome Biology, Vol. 2, No. 12. (2001) by Lakshminarayan Iyer, L. Aravind, Peer Bork, et al.Kay Hofmann, Arcady Mushegian, Igor Zhulin, Eugene Koonin posted to sequence science inactive enzyme bioinformatics aravind analysis by robfsouza on 2009-09-18 22:31:39 as along with 2 people bpcusack eweaver
	Adhesion Molecules and Other Secreted Host‐Interaction Determinants in Apicomplexa: Insights from Comparative Genomics [My Copy] International Review of Cytology, Vol. 262 (2007), pp. 1-74. by V. Anantharaman, L. Iyer, S. Balaji, L. Aravind posted to inactive genomics evolution enzyme comparative aravind adhesion by robfsouza on 2009-09-18 22:28:41 as
	Plasmodium BiologyGenomic Gleanings [My Copy] Cell, Vol. 115, No. 7. (26 December 2003), pp. 771-785. by L. Aravind, Lakshminarayan M. Iyer, Thomas E. Wellems, Louis H. Miller posted to inactive enzyme aravind by robfsouza on 2009-09-18 22:25:55 as

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evolution	136
protein	88
microorganism	55
special	55
catalysis	51
inactive	49
review	46
aravind	44
promiscuity	43
kinetics	33
metabolism	33
function	29
structure	29
fold	26
enzyme-promis-paper	24
assay	22
catalytic	21
activity	19
binding	18
database	18
superfamily	18
mechanism	17
reaction	17
dynamics	16
network	16
domain	13
simulation	13
electrochemistry	12
inhibitor	12
kinetic	12
dna	11
fitting	11
immunoassay	11
molecular	11
tunneling	11
design	10
p	10
pathway	10
prediction	10
procedure	10
progress	10
protein_structure	10
restriction	10
scaffold	10
bioinformatics	9
cancer	9
channeling	9
experiment	9
ligand	9
metabolic	9
barrel	8
catalytic_site	8
chromatin	8
classification	8
curves	8
electrostatics	8
kinase	8
michaelis-menten	8
multifunctional_enzyme	8
recognition	8
sequence	8
w-function	8
angiotensin	7
biocatalysis	7
converting	7
dynamics-reactivity	7
glycolysis	7
hrp	7
layer-by-layer	7
md	7
pathways	7
qmmm	7
reconstruction	7
substrate	7
artificial	6
cat_res	6
cholesterol	6
cyclodextrin	6
database_issue	6
directed_evolution	6
eukaryote	6
genome	6
hao	6
pqe	6
regulation	6
secondary	6
similarity	6
specificity	6
amplification	5
analysis	5
dipeptidyl	5
engineering	5
estrogen	5
iv	5
microplate	5
peptidase	5
pka	5
solution	5
stochastic	5
unconventional-lbl	5

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