Tag epigenome [45 articles] Export

Recent papers classified by the tag epigenome.

	Human DNA methylomes at base resolution show widespread epigenomic differences [My Copy] Nature, Vol. 462, No. 7271. (14 October 2009), pp. 315-322. by Ryan Lister, Mattia Pelizzola, Robert H. Dowen, et al.R. David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R. Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo, Lee Edsall, Jessica Antosiewicz-Bourget, Ron Stewart, Victor Ruotti, A. Harvey Millar, James A. Thomson, Bing Ren, Joseph R. Ecker posted to methylome epigenome by colinveal on 2009-10-15 09:43:36 as along with 27 people and 4 groups djkt hyojinkang gbloeb akakak guhjy jessopher malay gdb qayub greg neils megraw mamitamura tonamswish rsaito clearbluespring rschulz RyuOgawa hagechouchin443 devinmhellesen daveGerrard polivares dswan fenghezi frohike liqbbi ethanmj JLab CTCF BergmanLab Journal picks
	Epigenomics: Detailed analysis [My Copy] Nature, Vol. 454, No. 7205. (06 August 2008), pp. 795-798. by Laura Bonetta posted to review epigenome by Zephyrus on 2009-10-08 07:51:32 as along with 4 people and 1 group misonneh frohike reyez jkeilty Roswell Cancer Crosstalk
	RNA regulation of epigenetic processes. [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 31, No. 1. (January 2009), pp. 51-59. by John S. Mattick, Paulo P. Amaral, Marcel E. Dinger, Tim R. Mercer, Mark F. Mehler posted to signals rna-regulation rna regulation gene-regulation epigenome epigenetic environment chromosomes chromatin by bertelsen on 2009-10-06 00:41:53 as along with 3 people guhjy galka8_diploma rdowell
	Reprogramming the epigenome during germline and seed development [My Copy] Genome Biology, Vol. 10, No. 8. (2009), 232. by Mark Johnson, Judith Bender posted to transposon srna methylation epigenomics epigenome epigenetics by natstreet on 2009-09-17 09:12:50 as along with 1 person megraw
	The ageing epigenome: damaged beyond repair? [My Copy] Ageing research reviews, Vol. 8, No. 3. (09 July 2009), pp. 189-198. by David A. Sinclair, Philipp Oberdoerffer posted to repair epigenome damage aging by smichan on 2009-08-21 22:03:49 as along with 2 people mkotlyar greg
	The mammalian epigenome. [My Copy] Cell, Vol. 128, No. 4. (23 February 2007), pp. 669-681. by Bradley E. Bernstein, Alexander Meissner, Eric S. Lander posted to review methylation mammalian epigenome dna by saravana on 2009-08-13 21:18:56 as along with 7 people jmstat galka8_diploma suizifish guhjy slevy03 jasonflannick karfunkel
	From genome to epigenome. [My Copy] Hum Mol Genet, Vol. 14 Spec No 1 (15 April 2005) by A. Murrell, V. K. Rakyan, S. Beck posted to epigenome by selimuz on 2009-04-13 10:08:39 as along with 2 people mmartin vplagnol
	A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis [My Copy] Nature Biotechnology, Vol. 26, No. 7. (08 July 2008), pp. 779-785. by Thomas A. Down, Vardhman K. Rakyan, Daniel J. Turner, et al.Paul Flicek, Heng Li, Eugene Kulesha, Stefan Graf, Nathan Johnson, Javier Herrero, Eleni M. Tomazou, Natalie P. Thorne, Liselotte Backdahl, Marlis Herberth, Kevin L. Howe, David K. Jackson, Marcos M. Miretti, John C. Marioni, Ewan Birney, Tim J. P. Hubbard, Richard Durbin, Simon Tavare, Stephan Beck posted to batman bayesian chip-seq deconvolution epigenome genome-wide medip medip-seq methylome by sebastien_vigneau on 2009-03-19 15:21:29 as along with 9 people and 1 group fabrices druvus timhubbard mmartin rschulz bpcusack slevy03 oelemento guhjy KCL & UCL Bioinformatics
	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data. [My Copy] Nature methods, Vol. 5, No. 9. (September 2008), pp. 829-834. by A. Valouev, D. S. Johnson, A. Sundquist, et al.C. Medina, E. Anton, S. Batzoglou, R. M. Myers, A. Sidow posted to chip-seq enrichment epigenome epigenomics quantitative quest by sebastien_vigneau on 2009-03-19 15:18:41 as along with 1 person cassj
	Reproductive epigenetics [My Copy] Clinical Genetics, Vol. 65, No. 4. (2004), pp. 247-260. by T. L. J. Kelly, J. M. Trasler posted to epigenome by cscweb on 2009-03-11 12:17:20 as along with 1 person amabeise
	Epigenetics in evolution and disease [My Copy] The Lancet, Vol. 372 (December 2008), pp. S90-S96. by M. Esteller posted to epigenome by cscweb on 2009-03-11 12:06:37 as along with 1 person and 1 group cgravlee Med Anthro @ UF
	The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation. [My Copy] Nature genetics, Vol. 41, No. 1. (21 January 2009), pp. 125-129. by Jing Wang, Sarah Hevi, Julia K. Kurash, et al.Hong Lei, Frédérique Gay, Jeffrey Bajko, Hui Su, Weitao Sun, Hua Chang, Guoliang Xu, François Gaudet, En Li, Taiping Chen posted to epigenetics epigenome methylation methylome by epigenetics on 2009-01-09 12:08:31 as along with 2 people ashkelon13 guhjy
	Genome-wide profiling of methylated promoters in pancreatic adenocarcinoma: defining the pancreatic pancer epigenome. [My Copy] Cancer biology & therapy, Vol. 7, No. 7. (July 2008), pp. 1157-1159. by P. Corn posted to adenocarcinoma cancer cancer-crosstalk epigenome pancreas by Zephyrus to the group Roswell Cancer Crosstalk on 2008-11-24 02:18:09 as
	SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes [My Copy] BMC Bioinformatics, Vol. 9 (07 October 2008), 422. by Raj Chari, Bradley P. Coe, Craig Wedseltoft, et al.Marie Benetti, Ian M. Wilson, Emily A. Vucic, Calum Macaulay, Raymond T. Ng, Wan L. Lam posted to cancer data-integration epigenome integrate software transcriptome by pengchy on 2008-10-20 02:16:45 as along with 5 people jfr wimufi guhjy mitko operon
	Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis [My Copy] Nucleic Acids Research, Vol. 33, No. 18. (2005), pp. 5868-5877. by Alexander Meissner, Andreas Gnirke, George W. Bell, Bernard Ramsahoye, Eric S. Lander, Rudolf Jaenisch posted to epigenetics epigenome methods methylation by epigenetics on 2008-08-21 13:36:30 as along with 1 person hkuhn
	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2344-2349. by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung posted to bioinformatics chromatin epigenetics epigenome histone by epigenetics on 2008-08-01 13:46:06 as along with 8 people darian mkiyer tonamswish ewilban1 rschulz polivares caseybrown djkt
	An analytical pipeline for genomic representations used for cytosine methylation studies [My Copy] Bioinformatics (18 March 2008), btn096. by Reid F. Thompson, Mark Reimers, Batbayar Khulan, et al.Mathieu Gissot, Todd A. Richmond, Quan Chen, Xin Zheng, Kami Kim, John M. Greally posted to bioinformatics epigenetics epigenome methylation methylome by epigenetics on 2008-04-10 22:56:08 as along with 1 person renatomilani
	Cytosine methylation profiling of cancer cell lines [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4844-4849. by Mathias Ehrich, Julia Turner, Peter Gibbs, et al.Lara Lipton, Mara Giovanneti, Charles Cantor, Dirk van den Boom posted to cancer epigenetics epigenome methylation methylome by epigenetics on 2008-04-10 22:50:29 as
	Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation. [My Copy] Cell, Vol. 130, No. 5. (7 September 2007), pp. 851-862. by O. Mathieu, J. Reinders, M. Caikovski, C. Smathajitt, J. Paszkowski posted to assymetrical cg cytosine epigenome methylation stability by slonik on 2008-04-04 04:59:08 as along with 1 person saru
	Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning [My Copy] Nature, Vol. 452, No. 7184. (17 February 2008), pp. 215-219. by Shawn J. Cokus, Suhua Feng, Xiaoyu Zhang, et al.Zugen Chen, Barry Merriman, Christian D. Haudenschild, Sriharsa Pradhan, Stanley F. Nelson, Matteo Pellegrini, Steven E. Jacobsen posted to epigenetics epigenome methylation plant by epigenetics on 2008-02-20 08:46:59 as along with 15 people and 1 group druvus darian iamlily1046 ychang0918 rschulz natstreet iris42 mmartin hkuhn kengg usagi-kirin djkt ghattem mdimon slonik KCL & UCL Bioinformatics
	Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders [My Copy] Genome Res. (29 January 2008), gr.6880908. by Alvaro Rada-Iglesias, Adam Ameur, Philipp Kapranov, et al.Stefan Enroth, Jan Komorowski, Thomas R. Gingeras, Claes Wadelius posted to chromatin disease epigenetics epigenome histone by epigenetics on 2008-02-07 15:20:39 as along with 2 people Eroslavochka davfre
	Epigenetic regulation and the variability of gene expression [My Copy] Nature Genetics, Vol. 40, No. 2. (29 January 2008), pp. 141-147. by Jung K. Choi, Young-Joon Kim posted to chromatin epigenetics epigenome evolution histone inheritance yeast by epigenetics on 2008-01-31 09:09:28 as along with 7 people hagechouchin443 Scis0000002 balabu inesdesantiago bootsy rschulz maralena
	Genome-wide H3K9 histone acetylation profiles are altered in benzopyrene treated MCF7 breast cancer cells [My Copy] J. Biol. Chem. (7 December 2007), M707506200. by Bekim Sadikovic, Joseph Andrews, David Carter, John Robinson, David I. Rodenhiser posted to cancer chromatin epigenetics epigenome hdacs histone toxicology by epigenetics on 2007-12-22 15:52:27 as along with 2 people Eroslavochka vega
	Integrated epigenomic analyses of neuronal MeCP2 reveal a role for long-range interaction with active genes. [My Copy] Proc Natl Acad Sci U S A (27 November 2007) by Dag H H. Yasui, Sailaja Peddada, Mark C C. Bieda, et al.Roxanne O O. Vallero, Amber Hogart, Raman P P. Nagarajan, Karen N N. Thatcher, Peggy J J. Farnham, Janine M M. Lasalle posted to epigenetics epigenome methylation by epigenetics on 2007-12-06 19:14:00 as along with 1 person sebastien_vigneau
	Controlling elements are wild cards in the epigenomic deck. [My Copy] Proc Natl Acad Sci U S A (19 November 2007) by Jennifer E E. Cropley, David I K I. Martin posted to epigenetics epigenome regulator by sebastien_vigneau on 2007-11-22 09:16:03 as along with 2 people balicea dchughes
	DNA methylation analysis by pyrosequencing. [My Copy] Nat Protoc, Vol. 2, No. 9. (2007), pp. 2265-2275. by J. Tost, I. G. Gut posted to epigenetics epigenome methods methylation pyrosequencing by epigenetics on 2007-11-12 13:53:32 as along with 2 people idoerg daforerog
	Genome-wide analysis of DNA methylation patterns [My Copy] Development (10 October 2007), dev.001131. by Daniel Zilberman, Steven Henikoff posted to epigenetics epigenome methods methylation reviews by epigenetics on 2007-11-02 14:54:38 as along with 5 people christoffpale shikin dchughes sebastien_vigneau guhjy
	Toward a human epigenome [My Copy] Nature Genetics, Vol. 38, No. 12., pp. 1359-1360. by Romulo M. Brena, Tim H. M. Huang, Christoph Plass posted to epigenetics epigenome by epigenetics on 2007-09-19 16:25:22 as
	DNA methylation profiling of human chromosomes 6, 20 and 22. [My Copy] Nat Genet (29 October 2006) by Florian Eckhardt, Joern Lewin, Rene Cortese, et al.Vardhman K K. Rakyan, John Attwood, Matthias Burger, John Burton, Tony V V. Cox, Rob Davies, Thomas A A. Down, Carolina Haefliger, Roger Horton, Kevin Howe, David K K. Jackson, Jan Kunde, Christoph Koenig, Jennifer Liddle, David Niblett, Thomas Otto, Roger Pettett, Stefanie Seemann, Christian Thompson, Tony West, Jane Rogers, Alex Olek, Kurt Berlin, Stephan Beck posted to bioinformatics epigenetics epigenome methods methylation methylome by epigenetics on 2007-09-19 16:17:53 as along with 4 people suizifish plofje shigepong jo_davies
	Global Assessment of Combinatorial Post-translational Modification of Core Histones in Yeast Using Contemporary Mass Spectrometry: LYS4 TRIMETHYLATION CORRELATES WITH DEGREE OF ACETYLATION ON THE SAME H3 TAIL [My Copy] J. Biol. Chem., Vol. 282, No. 38. (21 September 2007), pp. 27923-27934. by Lihua Jiang, Jonell N. Smith, Shannon L. Anderson, Ping Ma, Craig A. Mizzen, Neil L. Kelleher posted to chromatin epigenetics epigenome histone methods by epigenetics on 2007-09-19 11:19:40 as
	High-resolution genome-wide mapping of histone modifications. [My Copy] Nat Biotechnol, Vol. 22, No. 8. (August 2004), pp. 1013-1016. by T. Y. Roh, W. C. Ngau, K. Cui, D. Landsman, K. Zhao posted to chromatin epigenetics epigenome histone by epigenetics on 2007-09-07 01:14:57 as
	Genomic biology: The epigenomic era opens [My Copy] Nature, Vol. 448, No. 7153. (01 August 2007), pp. 548-549. by Stephen B. Baylin, Kornel E. Schuebel posted to epigenome by epigenetics on 2007-08-27 11:58:40 as along with 3 people and 1 group guhjy dchughes saru Bioinformatics
	Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. [My Copy] Nature, Vol. 448, No. 7153. (2 August 2007), pp. 553-560. by Tarjei S. Mikkelsen, Manching Ku, David B. Jaffe, et al.Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung K. Kim, Richard P. Koche, William Lee, Eric Mendenhall, Aisling O'Donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S. Lander, Bradley E. Bernstein posted to chromatin epigenetics epigenome histone stem by epigenetics on 2007-08-03 18:16:58 as along with 19 people and 1 group hkuhn RyuOgawa stubrown ewilban1 tonamswish gdb guhjy brant dchughes vega kengg vplagnol olympos bioyang cabbagezs rschulz slevy03 jasonflannick inesdesantiago EisenLab
	Genome-Scale Identification of Nucleosome Positions in S. cerevisiae [My Copy] Science, Vol. 309, No. 5734. (22 July 2005), pp. 626-630. by Guo-Cheng Yuan, Yuen-Jong Liu, Michael F. Dion, et al.Michael D. Slack, Lani F. Wu, Steven J. Altschuler, Oliver J. Rando posted to chromatin epigenetics epigenome histone by epigenetics on 2007-07-25 16:45:28 as along with 8 people humburg hagechouchin443 ilyashl aalibes koller olympos redfish99213 elzodw
	Identification of an imprinted U2af binding protein related sequence on mouse chromosome 11 using the RLGS method [My Copy] Nat Genet, Vol. 6, No. 1. (January 1994), pp. 33-40. by Y. Hayashizaki, H. Shibata, S. Hirotsune, et al.H. Sugino, Y. Okazaki, N. Sasaki, K. Hirose, H. Imoto, H. Okuizumi, M. Muramatsu, H. Komatsubara, T. Shiroishi, K. Moriwaki, M. Katsuki, N. Hatano, H. Sasaki, T. Ueda, N. Mise, N. Takagi, C. Plass, V. M. Chapman posted to epigenetics epigenome methods methylation methylome by epigenetics on 2007-07-03 10:35:54 as
	DNA Methylation Analysis by MethyLight Technology [My Copy] Methods, Vol. 25, No. 4. (December 2001), pp. 456-462. by Binh N. Trinh, Tiffany I. Long, Peter W. Laird posted to epigenetics epigenome methods methylation methylome by epigenetics on 2007-07-03 10:29:08 as
	The emerging science of epigenomics. [My Copy] Hum Mol Genet, Vol. 15 Spec No 1 (15 April 2006) by P. A. Callinan, A. P. Feinberg posted to bioinformatics epigenetics epigenome methods methylome by epigenetics on 2007-07-03 10:26:26 as along with 2 people and 2 groups pawelsobko dchughes G4ID Genetics-of-Gambling
	A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies. [My Copy] PLoS Med, Vol. 3, No. 12. (December 2006) by D. S. Shames, L. Girard, B. Gao, et al.M. Sato, C. M. Lewis, N. Shivapurkar, A. Jiang, C. M. Perou, Y. H. Kim, J. R. Pollack, K. M. Fong, C. L. Lam, M. Wong, Y. Shyr, R. Nanda, O. I. Olopade, W. Gerald, D. M. Euhus, J. W. Shay, A. F. Gazdar, J. D. Minna posted to cancer epigenetics epigenome methylation by epigenetics on 2007-07-02 13:57:09 as along with 2 people jfr blackm0k
	High-Resolution Profiling of Histone Methylations in the Human Genome [My Copy] Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837. by Artem Barski, Suresh Cuddapah, Kairong Cui, et al.Tae-Young Roh, Dustin E. Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao posted to epigenetics epigenome histone methylation by epigenetics on 2007-06-21 22:22:47 as along with 2 people polivares zwang
	Epigenome scans and cancer genome sequencing converge on WNK2, a kinase-independent suppressor of cell growth [My Copy] PNAS (19 June 2007), 0700683104. by Chibo Hong, Scott K. Moorefield, Peter Jun, et al.Kenneth D. Aldape, Samir Kharbanda, Heidi S. Phillips, Joseph F. Costello posted to cancer epigenetics epigenome by epigenetics on 2007-06-20 22:18:20 as
	Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin [My Copy] Science, Vol. 316, No. 5831. (15 June 2007), pp. 1625-1628. by Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, et al.David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker posted to chromatin epigenetics epigenome histone by epigenetics on 2007-06-16 16:07:14 as along with 3 people aaltenburger operon cabbagezs
	The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin [My Copy] Science, Vol. 316, No. 5831. (15 June 2007), pp. 1586-1591. by Christopher D. Smith, Shengqiang Shu, Christopher J. Mungall, Gary H. Karpen posted to chromatin epigenetics epigenome histone by epigenetics on 2007-06-16 16:05:59 as along with 3 people operon djkt cabbagezs
	Statistical analysis of the genomic distribution and correlation of regulatory elements in the ENCODE regions. [My Copy] Genome research, Vol. 17, No. 6. (1 June 2007), pp. 787-797. by Zhengdong D. Zhang, Alberto Paccanaro, Yutao Fu, et al.Sherman Weissman, Zhiping Weng, Joseph Chang, Michael Snyder, Mark B. Gerstein posted to bioinformatics epigenetics epigenome by epigenetics on 2007-06-14 16:33:43 as along with 9 people and 5 groups paccanarolab aprasad ana Borelli kengg ghattem blobbybirdman inesdesantiago jasonflannick Paccanaro Lab structural_bioinformatics Bioinformatics Plantandetc UH - Computational Biology
	Identification of higher-order functional domains in the human ENCODE regions [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 917-927. by Robert E. Thurman, Nathan Day, William S. Noble, John A. Stamatoyannopoulos posted to bioinformatics epigenetics epigenome by epigenetics on 2007-06-14 16:33:02 as along with 3 people and 1 group timflutre ghattem jasonflannick Bioinformatics
	The landscape of histone modifications across 1% of the human genome in five human cell lines [My Copy] Genome Research, Vol. 17, No. 6. (1 June 2007), pp. 691-707. by Christoph M. Koch, Robert M. Andrews, Paul Flicek, et al.Shane C. Dillon, UlaÅ KaraÃ¶z, Gayle K. Clelland, Sarah Wilcox, David M. Beare, Joanna C. Fowler, Phillippe Couttet, Keith D. James, Gregory C. Lefebvre, Alexander W. Bruce, Oliver M. Dovey, Peter D. Ellis, Pawandeep Dhami, Cordelia F. Langford, Zhiping Weng, Ewan Birney, Nigel P. Carter, David Vetrie, Ian Dunham posted to epigenetics epigenome histone by epigenetics on 2007-06-14 16:31:25 as along with 8 people and 1 group tonamswish guhjy djkt olympos ghattem maximilianh xingxu jasonflannick Bioinformatics

Note: You may cite this page as: http://www.citeulike.org/tag/epigenome

epigenetics	39
histone	19
chromatin	17
methylation	16
methods	9
methylome	9
cancer	7
interactome	7
pyrosequencing	7
bioinformatics	6
nucleosome	5
review	3
yeast	3
adenocarcinoma	2
cancer-crosstalk	2
chip-seq	2
chipseq-project	2
chromosomes	2
environment	2
epigenetic	2
epigenomics	2
gene-regulation	2
pancreas	2
regulation	2
rna	2
rna-regulation	2
signals	2
toxicology	2
aging	1
assymetrical	1
batman	1
bayesian	1
cg	1
cytosine	1
damage	1
data-integration	1
deconvolution	1
dictyostelium	1
disease	1
dna	1
enrichment	1
evolution	1
genome-wide	1
hdacs	1
inheritance	1
integrate	1
invertebrate	1
mammalian	1
medip	1
medip-seq	1
plant	1
protist	1
quantitative	1
quest	1
regulator	1
repair	1
reviews	1
software	1
srna	1
stability	1
stem	1
toicant	1
transcriptome	1
transposon	1

Tag epigenome [45 articles] Export

Related Tags