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Tag epistasis [88 articles]

Recent papers classified by the tag epistasis.
  • Crystal Structure of an Ancient Protein: Evolution by Conformational Epistasis
    Science (16 August 2007), 1142819.
    by Eric A Ortlund, Jamie T Bridgham, Matthew R Redinbo, Joseph W Thornton
    posted to co-evolution epistasis evolution mutation protein structure by zwang on 2007-08-18 08:37:30 as *** along with 4 people and 1 group bicko dpollard csjonline ramensky EisenLab
  • Bayesian inference of epistatic interactions in case-control studies
    Nature Genetics, Vol. 39, No. 9. (26 August 2007), pp. 1167-1173.
    by Yu Zhang, Jun S Liu
    posted to bayesian epistasis interaction by zwang on 2007-09-05 01:54:37 as ** along with 2 people jyuh mailund
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
    posted to epistasis expression regulation by xingxu on 2007-11-29 03:49:25 as ** along with 10 people and 6 groups dpollard xico nickluscombe zwang lizabeth dejori naegele czeller mapplab siebert Bioinformatics EisenLab WetBiology EBI-regulation ic4 generif_paper
  • Statistical epistasis is a generic feature of gene regulatory networks.
    Genetics (8 October 2006)
    by Arne B B Gjuvsland, Ben J J Hayes, Stig W W Omholt, Orjan Carlborg
    posted to epistasis network regulation statistics by xingxu on 2008-04-17 13:16:33 as ** along with 3 people aswin zwang natstreet
  • Gene Network Inference via Structural Equation Modeling in Genetical Genomics Experiments.
    Genetics (3 February 2008)
    by Bing Liu, Alberto de la Fuente, Ina Hoeschele
    posted to epistasis genomics modeling by xingxu on 2008-02-24 03:01:20 as ** along with 6 people and 1 group orzenil dpollard raiyar caseybrown smgomez jyuh EisenLab
  • A forest-based approach to identifying gene and gene gene interactions
    Proceedings of the National Academy of Sciences (28 November 2007), 0709868104.
    by Xiang Chen, Ching-Ti Liu, Meizhuo Zhang, Heping Zhang
    posted to bioinformatics epistasis by xingxu on 2008-01-11 18:44:58 as ** along with 5 people jyuh balicea cjeans zwang hpaces
  • From classical genetics to quantitative genetics to systems biology: modeling epistasis.
    PLoS genetics, Vol. 4, No. 3. (March 2008)
    by DL Aylor, ZB Zeng
    posted to epistasis modeling quantitative_genetics systems by xingxu on 2008-04-17 12:57:40 as ** along with 2 people Ayest jyuh
  • Epistasis between deleterious mutations and the evolution of recombination
    Trends in Ecology & Evolution, Vol. In Press, Corrected Proof
    by Roger D Kouyos, Olin K Silander, Sebastian Bonhoeffer
    posted to epistasis evolution genomics recombination by xingxu on 2007-11-29 03:44:56 as ** along with 2 people and 2 groups dchughes zwang G4ID Genetics-of-Gambling
  • How to perform meaningful estimates of genetic effects.
    PLoS genetics, Vol. 4, No. 5. (2008)
    by JM Alvarez-Castro, A Le Rouzic, O Carlborg
    posted to epistasis statistics by xingxu on 2008-05-05 20:46:30 as **
  • Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions
    Methods, Vol. 40, No. 4. (December 2006), pp. 344-352.
    by M Schuldiner, SR Collins, JS Weissman, NJ Krogan
    posted to epistasis genetic interaction by tuck on 2006-12-14 11:04:54 as **
  • The rank ordering of genotypic fitness values predicts genetic constraint on natural selection on landscapes lacking sign epistasis.
    Genetics, Vol. 171, No. 3. (November 2005), pp. 1397-1405.
    by DM Weinreich
    posted to adaptation epistasis model by stevanspringer on 2007-11-14 21:55:07 as **
  • Perspective: Sign epistasis and genetic constraint on evolutionary trajectories.
    Evolution Int J Org Evolution, Vol. 59, No. 6. (June 2005), pp. 1165-1174.
    by DM Weinreich, RA Watson, L Chao
    posted to adaptation epistasis hypothesis by stevanspringer on 2007-11-14 21:56:31 as **
  • Incipient speciation by divergent adaptation and antagonistic epistasis in yeast
    Nature, Vol. 447, No. 7144., pp. 585-588.
    by Jeremy R Dettman, Caroline Sirjusingh, Linda M Kohn, James B Anderson
    posted to antagonistic epistasis evolution neurospora speciation by stajich on 2007-09-28 07:18:12 as ** along with 3 people and 3 groups stevanspringer cjeans biomcgary FAB-lab Marcotte_Lab Berkeley Mycology
  • Coevolution of robustness, epistasis, and recombination favors asexual reproduction.
    Proc Natl Acad Sci U S A (23 July 2007)
    by Thomas Maccarthy, Aviv Bergman
    posted to epistasis evolution sex by sebastien_vigneau on 2007-07-27 13:51:17 as ** along with 1 person mjoach
  • Mutation strategy improves GAs performance on epistatic problems Mutation strategy improves GAs performance on epistatic problems
    Evolutionary Computation, 2002. CEC '02. Proceedings of the 2002 Congress on, Vol. 1 (2002), pp. 968-973.
    by M Shinkai, H Aguirre, K Tanaka
    posted to epistasis nklandscapes problem_analysis by santi515 on 2007-12-17 17:07:11 as read
  • Genetic Algorithms on NK-Landscapes: Effects of Selection, Drift, Mutation, and Recombination
    Applications of Evolutionary Computing: EvoWorkshops 2003: EvoBIO, EvoCOP, EvoIASP, EvoMUSART, EvoROB, and EvoSTIM, Essex, UK, April 14-16, 2003. Proceedings (2003), pp. 131-142.
    by Hernán E Aguirre, Kiyoshi Tanaka
    posted to epistasis nklandscapes problem_analysis by santi515 on 2007-12-13 12:17:45 as read
  • New Entropy-Based Measures of Gene Significance and Epistasis
    Genetic and Evolutionary Computation – GECCO 2003 (2003), pp. 214-214.
    by Dong-Il Seo, Yong-Hyuk Kim, Byung-Ro Moon
    posted to epistasis problem_difficulty by santi515 on 2007-12-20 16:27:29 as **
  • Using Problem Generators to Explore the Effects of Epistasis
    (1997)
    by Kenneth A De Jong, Mitchell A Potter, William M Spears
    edited by Thomas Bäck
    posted to epistasis nklandscapes problem_analysis ga by santi515 on 2007-12-17 15:52:24 as read
  • Maximally rugged NK landscapes contain the highest peaks
    (2005), pp. 579-584.
    by Benjamin Skellett, Benjamin Cairns, Nicholas Geard, Bradley Tonkes, Janet Wiles
    posted to epistasis nklandscapes problem_analysis by santi515 on 2007-12-13 12:16:05 as read
  • A tunable model for multi-objective, epistatic, rugged, and neutral fitness landscapes
    (2008), pp. 795-802.
    by Thomas Weise, Stefan Niemczyk, Hendrik Skubch, Roland Reichle, Kurt Geihs
    posted to deceptive epistasis multimodal neutral problem_difficulty ruggedness by santi515 on 2008-07-23 11:34:31 as read
  • Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans
    Hum. Mol. Genet., Vol. 11, No. 20. (1 October 2002), pp. 2463-2468.
    by Heather J Cordell
    posted to epistasis by RobMills on 2007-07-01 19:46:51 as **
  • On the theoretical and empirical framework for studying genetic interactions within and among species.
    Am Nat, Vol. 165, No. 5. (May 2005), pp. 524-536.
    by JP Demuth, MJ Wade
    posted to epistasis speciation by RMGraze on 2006-10-09 20:42:33 as **
  • Epistasis and Its Contribution to Genetic Variance Components
    Genetics, Vol. 139, No. 3. (1 March 1995), pp. 1455-1461.
    by JM Cheverud, EJ Routman
    posted to epistasis quantitative_genetics by RMGraze on 2006-09-29 18:30:22 as **
  • Mapping polygenes.
    Annu Rev Genet, Vol. 27 (1993), pp. 205-233.
    by SD Tanksley
    posted to epistasis qtl quantitative_genetics sex_comb_ref by RMGraze on 2006-09-25 22:58:58 as ** along with 1 person bjbecerra
  • Nonlinear Developmental Processes as Sources of Dominance
    Genetics, Vol. 159, No. 1. (1 September 2001), pp. 423-432.
    by Michael A Gilchrist, Fredrik H Nijhout
    posted to dominance epistasis by RMGraze on 2006-03-22 01:00:21 as **
  • Modular epistasis in yeast metabolism
    Nature Genetics, Vol. 37, No. 1. (12 December 2004), 77.
    by Daniel Segrè, Alexander Deluna, George M Church, Roy Kishony
    posted to epistasis metabolism yeast by RMGraze on 2005-09-16 21:47:13 as ** along with 6 people tmmurali balajis i41m nirfriedman koller edwardmorrissey
  • Alternative definitions of epistasis: dependence and interaction
    Trends in Ecology & Evolution, Vol. 16, No. 9. (1 September 2001), pp. 498-504.
    by Michael J Wade, Rasmus G Winther, Aneil F Agrawal, Charles J Goodnight
    posted to epistasis by RMGraze on 2006-09-23 00:47:08 as **
  • Modifier genes in mice and humans.
    Nat Rev Genet, Vol. 2, No. 3. (March 2001), pp. 165-174.
    by JH Nadeau
    posted to epistasis evolution genetic_modifiers synergistic_mutations by rklancer on 2005-10-24 03:05:41 as **
  • The selective values of alleles in a molecular network model are context dependent.
    Genetics, Vol. 166, No. 4. (April 2004), pp. 1715-1725.
    by J Peccoud, KV Velden, D Podlich, C Winkler, L Arthur, M Cooper
    posted to adaptive_landscape dynamics epistasis evolution genetics synergistic_mutations by rklancer on 2005-11-01 00:38:50 as read along with 4 people monod RMGraze balicea christiw
  • The biochemical architecture of an ancient adaptive landscape.
    Science, Vol. 310, No. 5747. (21 October 2005), pp. 499-501.
    by M Lunzer, SP Miller, R Felsheim, AM Dean
    posted to adaptive_landscape epistasis evolution protein_engineering by rklancer on 2005-10-23 16:06:57 as *** along with 2 people kentsis christiw
  • Exploiting the pathway structure of metabolism to reveal high-order epistasis.
    BMC systems biology, Vol. 2 (2008)
    by M Imielinski, C Belta
    posted to pathways metabolism knockout epistasis by ptrobajo on 2008-06-18 12:35:46 as ** along with 1 person jyuh
  • Interactions Between Stressful Environment and Gene Deletions Alleviate the Expected Average Loss of Fitness in Yeast
    Genetics, Vol. 178, No. 4. (1 April 2008), pp. 2105-2111.
    by Lukasz Jasnos, Katarzyna Tomala, Dorota Paczesniak, Ryszard Korona
    posted to deletions epistasis yeast by osilander on 2008-04-23 09:55:45 as **
  • How missing genes interact
    Nature Genetics, Vol. 39, No. 4., pp. 440-442.
    by Clifford Zeyl
    posted to epistasis by neveaire on 2008-01-08 02:53:53 as ****
  • Multiple Locus Linkage Analysis of Genomewide Expression in Yeast
    PLoS Biology, Vol. 3, No. 8. (1 August 2005), e267.
    by John D Storey, Joshua M Akey, Leonid Kruglyak
    posted to epistasis eqtl by mrockman on 2008-07-07 22:45:46 as ** along with 2 people and 1 group dipenps RMGraze RockmanLab
  • Genetic interactions between polymorphisms that affect gene expression in yeast
    Nature, Vol. 436, No. 7051., pp. 701-703.
    by Rachel B Brem, John D Storey, Jacqueline Whittle, Leonid Kruglyak
    posted to epistasis eqtl by mrockman on 2008-07-07 22:49:14 as ** along with 4 people and 3 groups lp2 JAShapiro dpollard cisevol EisenLab cis-regulatory-evolution RockmanLab
  • notes Deleterious mutations and the evolution of sexual reproduction.
    Nature, Vol. 336, No. 6198. (1 December 1988), pp. 435-440.
    by AS Kondrashov
    posted to epistasis evolution hypothesis robustness sex evolution-of-sex by mjoach on 2008-06-05 01:44:05 as ** along with 1 person timflutre
  • Epistasis correlates to genomic complexity
    PNAS, Vol. 103, No. 39. (26 September 2006), pp. 14402-14405.
    by Rafael Sanjuán, Santiago F Elena
    posted to alife epistasis gene-networks gene-regulation grn by mjoach on 2008-07-25 10:16:02 as **** along with 2 people and 1 group cmm nicg FAB-lab
  • A Network Model for the Correlation between Epistasis and Genomic Complexity
    PLoS ONE, Vol. 3, No. 7. (16 July 2008), e2663.
    by Rafael Sanjuán, Miguel R Nebot
    posted to alife epistasis gene-networks gene-regulation grn robustness by mjoach on 2008-07-25 10:18:01 as ***** along with 1 person tomhebbron
  • Sexual reproduction selects for robustness and negative epistasis in artificial gene networks
    Nature, Vol. 440, No. 7080. (2006), pp. 87-90.
    by Ricardo BR Azevedo, Rolf Lohaus, Suraj Srinivasan, Kristen K Dang, Christina L Burch
    posted to epistasis evolution gene-networks grn robustness sex by mjoach on 2008-07-04 12:17:00 as read along with 2 people and 1 group eldan cmm FAB-lab
  • Evidence for epistasis between SLC6A4 and ITGB3 in autism etiology and in the determination of platelet serotonin levels.
    Hum Genet (3 January 2007)
    by Ana M Coutinho, Inês Sousa, Madalena Martins, Catarina Correia, Teresa Morgadinho, Celeste Bento, Carla Marques, Assunção Ataíde, Teresa S Miguel, Jason H Moore, Guiomar Oliveira, Astrid M Vicente
    posted to slc6a4 seratonin itgb3 etiology epistasis autism by mgaldzic on 2007-01-11 00:03:32 as ** along with 1 group CHIP
  • Functional classification of drugs by properties of their pairwise interactions
    Nature Genetics, Vol. 38, No. 4. (19 March 2006), pp. 489-494.
    by Pamela Yeh, Ariane I Tschumi, Roy Kishony
    posted to epistasis by lingchong on 2006-04-20 14:26:24 as read along with 3 people and 1 group nirfriedman madhadron nickluscombe EBI-regulation
  • Polymorphism Interaction Analysis (PIA): a method for investigating complex gene-gene interactions
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Leah Mechanic, Brian Luke, Julie Goodman, Stephen Chanock, Curtis Harris
    posted to epistasis snp software statistics by jyuh on 2008-03-29 11:53:27 as ** along with 2 people waszak omalbam
  • Exploiting the proteome to improve the genome-wide genetic analysis of epistasis in common human diseases.
    Human genetics, Vol. 124, No. 1. (August 2008), pp. 19-29.
    by KA Pattin, JH Moore
    posted to epistasis gwa proteomics by jyuh on 2008-07-16 15:50:39 as ** along with 1 person wilbur
  • Penalized logistic regression for detecting gene interactions
    Biostat (11 April 2007), kxm010.
    by Mee Y Park, Trevor Hastie
    posted to epistasis by jyuh on 2008-08-16 10:33:15 as ** along with 1 person StatAnika
  • A powerful and flexible multilocus association test for quantitative traits.
    Am J Hum Genet, Vol. 82, No. 2. (February 2008), pp. 386-397.
    by LC Kwee, D Liu, X Lin, D Ghosh, MP Epstein
    posted to qtl epistasis by jyuh on 2008-03-01 00:44:40 as **
  • Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies
    BMC Bioinformatics, Vol. 9 (21 July 2008), 315.
    by Li Ma, Birali H Runesha, Daniel Dvorkin, John R Garbe, Yang Da
    posted to qtl gwa epistasis by jyuh on 2008-07-25 08:37:02 as **
  • Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 71-76.
    by Yujin Chung, Seung Y Lee, Robert C Elston, Taesung Park
    posted to epistasis mdr by jyuh on 2008-03-29 12:03:58 as ** along with 3 people Ayest shigepong massivemayhem
  • A partial least-square approach for modeling gene-gene and gene-environment interactions when multiple markers are genotyped.
    Genetic epidemiology (9 July 2008)
    by Tao Wang, Gloria Ho, Kenny Ye, Howard Strickler, Robert C C Elston
    posted to epistasis gene-environment pls by jyuh on 2008-07-30 15:36:33 as **
  • A unified model for functional and statistical epistasis and its application in quantitative trait Loci analysis.
    Genetics, Vol. 176, No. 2. (June 2007), pp. 1151-1167.
    by JM Alvarez-Castro, O Carlborg
    posted to epistasis functional-regression qtl by jyuh on 2008-07-29 05:04:38 as **
  • Genetic association tests in the presence of epistasis or gene-environment interaction.
    Genetic epidemiology (24 April 2008)
    by Kai Wang
    posted to epistasis gene-environment r software by jyuh on 2008-07-30 15:31:24 as **
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