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Tag epistasis [88 articles]

Recent papers classified by the tag epistasis.
  • Crystal Structure of an Ancient Protein: Evolution by Conformational Epistasis
    Science (16 August 2007), 1142819.
    by Eric A Ortlund, Jamie T Bridgham, Matthew R Redinbo, Joseph W Thornton
  • Bayesian inference of epistatic interactions in case-control studies
    Nature Genetics, Vol. 39, No. 9. (26 August 2007), pp. 1167-1173.
    by Yu Zhang, Jun S Liu
    posted to bayesian epistasis interaction by zwang on 2007-09-05 01:54:37 as ** along with 2 people jyuh mailund
  • Genetic reconstruction of a functional transcriptional regulatory network.
    Nat Genet (8 April 2007)
    by Zhanzhi Hu, Patrick J J Killion, Vishwanath R R Iyer
  • Statistical epistasis is a generic feature of gene regulatory networks.
    Genetics (8 October 2006)
    by Arne B B Gjuvsland, Ben J J Hayes, Stig W W Omholt, Orjan Carlborg
  • Gene Network Inference via Structural Equation Modeling in Genetical Genomics Experiments.
    Genetics (3 February 2008)
    by Bing Liu, Alberto de la Fuente, Ina Hoeschele
  • A forest-based approach to identifying gene and gene gene interactions
    Proceedings of the National Academy of Sciences (28 November 2007), 0709868104.
    by Xiang Chen, Ching-Ti Liu, Meizhuo Zhang, Heping Zhang
  • From classical genetics to quantitative genetics to systems biology: modeling epistasis.
    PLoS genetics, Vol. 4, No. 3. (March 2008)
    by DL Aylor, ZB Zeng
  • Epistasis between deleterious mutations and the evolution of recombination
    Trends in Ecology & Evolution, Vol. In Press, Corrected Proof
    by Roger D Kouyos, Olin K Silander, Sebastian Bonhoeffer
  • How to perform meaningful estimates of genetic effects.
    PLoS genetics, Vol. 4, No. 5. (2008)
    posted to epistasis statistics by xingxu on 2008-05-05 20:46:30 as **
  • Quantitative genetic analysis in Saccharomyces cerevisiae using epistatic miniarray profiles (E-MAPs) and its application to chromatin functions
    Methods, Vol. 40, No. 4. (December 2006), pp. 344-352.
    posted to epistasis genetic interaction by tuck on 2006-12-14 11:04:54 as **
  • The rank ordering of genotypic fitness values predicts genetic constraint on natural selection on landscapes lacking sign epistasis.
    Genetics, Vol. 171, No. 3. (November 2005), pp. 1397-1405.
    by DM Weinreich
    posted to adaptation epistasis model by stevanspringer on 2007-11-14 21:55:07 as **
  • Perspective: Sign epistasis and genetic constraint on evolutionary trajectories.
    Evolution Int J Org Evolution, Vol. 59, No. 6. (June 2005), pp. 1165-1174.
    by DM Weinreich, RA Watson, L Chao
    posted to adaptation epistasis hypothesis by stevanspringer on 2007-11-14 21:56:31 as **
  • Incipient speciation by divergent adaptation and antagonistic epistasis in yeast
    Nature, Vol. 447, No. 7144., pp. 585-588.
    by Jeremy R Dettman, Caroline Sirjusingh, Linda M Kohn, James B Anderson
  • Coevolution of robustness, epistasis, and recombination favors asexual reproduction.
    Proc Natl Acad Sci U S A (23 July 2007)
    by Thomas Maccarthy, Aviv Bergman
    posted to epistasis evolution sex by sebastien_vigneau on 2007-07-27 13:51:17 as ** along with 1 person mjoach
  • Mutation strategy improves GAs performance on epistatic problems Mutation strategy improves GAs performance on epistatic problems
    Evolutionary Computation, 2002. CEC '02. Proceedings of the 2002 Congress on, Vol. 1 (2002), pp. 968-973.
    posted to epistasis nklandscapes problem_analysis by santi515 on 2007-12-17 17:07:11 as read
  • Genetic Algorithms on NK-Landscapes: Effects of Selection, Drift, Mutation, and Recombination
    Applications of Evolutionary Computing: EvoWorkshops 2003: EvoBIO, EvoCOP, EvoIASP, EvoMUSART, EvoROB, and EvoSTIM, Essex, UK, April 14-16, 2003. Proceedings (2003), pp. 131-142.
    by Hernán E Aguirre, Kiyoshi Tanaka
    posted to epistasis nklandscapes problem_analysis by santi515 on 2007-12-13 12:17:45 as read
  • New Entropy-Based Measures of Gene Significance and Epistasis
    Genetic and Evolutionary Computation – GECCO 2003 (2003), pp. 214-214.
    by Dong-Il Seo, Yong-Hyuk Kim, Byung-Ro Moon
    posted to epistasis problem_difficulty by santi515 on 2007-12-20 16:27:29 as **
  • Using Problem Generators to Explore the Effects of Epistasis
    (1997)
    by Kenneth A De Jong, Mitchell A Potter, William M Spears
    edited by Thomas Bäck
    posted to epistasis nklandscapes problem_analysis ga by santi515 on 2007-12-17 15:52:24 as read
  • Maximally rugged NK landscapes contain the highest peaks
    (2005), pp. 579-584.
    by Benjamin Skellett, Benjamin Cairns, Nicholas Geard, Bradley Tonkes, Janet Wiles
    posted to epistasis nklandscapes problem_analysis by santi515 on 2007-12-13 12:16:05 as read
  • A tunable model for multi-objective, epistatic, rugged, and neutral fitness landscapes
    (2008), pp. 795-802.
    by Thomas Weise, Stefan Niemczyk, Hendrik Skubch, Roland Reichle, Kurt Geihs
  • Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans
    Hum. Mol. Genet., Vol. 11, No. 20. (1 October 2002), pp. 2463-2468.
    by Heather J Cordell
    posted to epistasis by RobMills on 2007-07-01 19:46:51 as **
  • On the theoretical and empirical framework for studying genetic interactions within and among species.
    Am Nat, Vol. 165, No. 5. (May 2005), pp. 524-536.
    by JP Demuth, MJ Wade
    posted to epistasis speciation by RMGraze on 2006-10-09 20:42:33 as **
  • Epistasis and Its Contribution to Genetic Variance Components
    Genetics, Vol. 139, No. 3. (1 March 1995), pp. 1455-1461.
    by JM Cheverud, EJ Routman
    posted to epistasis quantitative_genetics by RMGraze on 2006-09-29 18:30:22 as **
  • Mapping polygenes.
    Annu Rev Genet, Vol. 27 (1993), pp. 205-233.
    by SD Tanksley
  • Nonlinear Developmental Processes as Sources of Dominance
    Genetics, Vol. 159, No. 1. (1 September 2001), pp. 423-432.
    by Michael A Gilchrist, Fredrik H Nijhout
    posted to dominance epistasis by RMGraze on 2006-03-22 01:00:21 as **
  • Modular epistasis in yeast metabolism
    Nature Genetics, Vol. 37, No. 1. (12 December 2004), 77.
    by Daniel Segrè, Alexander Deluna, George M Church, Roy Kishony
  • Alternative definitions of epistasis: dependence and interaction
    Trends in Ecology & Evolution, Vol. 16, No. 9. (1 September 2001), pp. 498-504.
    by Michael J Wade, Rasmus G Winther, Aneil F Agrawal, Charles J Goodnight
    posted to epistasis by RMGraze on 2006-09-23 00:47:08 as **
  • Modifier genes in mice and humans.
    Nat Rev Genet, Vol. 2, No. 3. (March 2001), pp. 165-174.
    by JH Nadeau
    posted to epistasis evolution genetic_modifiers synergistic_mutations by rklancer on 2005-10-24 03:05:41 as **
  • The selective values of alleles in a molecular network model are context dependent.
    Genetics, Vol. 166, No. 4. (April 2004), pp. 1715-1725.
    by J Peccoud, KV Velden, D Podlich, C Winkler, L Arthur, M Cooper
  • The biochemical architecture of an ancient adaptive landscape.
    Science, Vol. 310, No. 5747. (21 October 2005), pp. 499-501.
    by M Lunzer, SP Miller, R Felsheim, AM Dean
  • Exploiting the pathway structure of metabolism to reveal high-order epistasis.
    BMC systems biology, Vol. 2 (2008)
    posted to pathways metabolism knockout epistasis by ptrobajo on 2008-06-18 12:35:46 as ** along with 1 person jyuh
  • Interactions Between Stressful Environment and Gene Deletions Alleviate the Expected Average Loss of Fitness in Yeast
    Genetics, Vol. 178, No. 4. (1 April 2008), pp. 2105-2111.
    by Lukasz Jasnos, Katarzyna Tomala, Dorota Paczesniak, Ryszard Korona
    posted to deletions epistasis yeast by osilander on 2008-04-23 09:55:45 as **
  • How missing genes interact
    Nature Genetics, Vol. 39, No. 4., pp. 440-442.
    by Clifford Zeyl
    posted to epistasis by neveaire on 2008-01-08 02:53:53 as ****
  • Multiple Locus Linkage Analysis of Genomewide Expression in Yeast
    PLoS Biology, Vol. 3, No. 8. (1 August 2005), e267.
    by John D Storey, Joshua M Akey, Leonid Kruglyak
  • Genetic interactions between polymorphisms that affect gene expression in yeast
    Nature, Vol. 436, No. 7051., pp. 701-703.
    by Rachel B Brem, John D Storey, Jacqueline Whittle, Leonid Kruglyak
  • notes Deleterious mutations and the evolution of sexual reproduction.
    Nature, Vol. 336, No. 6198. (1 December 1988), pp. 435-440.
  • Epistasis correlates to genomic complexity
    PNAS, Vol. 103, No. 39. (26 September 2006), pp. 14402-14405.
    by Rafael Sanjuán, Santiago F Elena
  • A Network Model for the Correlation between Epistasis and Genomic Complexity
    PLoS ONE, Vol. 3, No. 7. (16 July 2008), e2663.
    by Rafael Sanjuán, Miguel R Nebot
  • Sexual reproduction selects for robustness and negative epistasis in artificial gene networks
    Nature, Vol. 440, No. 7080. (2006), pp. 87-90.
    by Ricardo BR Azevedo, Rolf Lohaus, Suraj Srinivasan, Kristen K Dang, Christina L Burch
  • Evidence for epistasis between SLC6A4 and ITGB3 in autism etiology and in the determination of platelet serotonin levels.
    Hum Genet (3 January 2007)
    by Ana M Coutinho, Inês Sousa, Madalena Martins, Catarina Correia, Teresa Morgadinho, Celeste Bento, Carla Marques, Assunção Ataíde, Teresa S Miguel, Jason H Moore, Guiomar Oliveira, Astrid M Vicente
    posted to slc6a4 seratonin itgb3 etiology epistasis autism by mgaldzic on 2007-01-11 00:03:32 as ** along with 1 group CHIP
  • Functional classification of drugs by properties of their pairwise interactions
    Nature Genetics, Vol. 38, No. 4. (19 March 2006), pp. 489-494.
    by Pamela Yeh, Ariane I Tschumi, Roy Kishony
  • Polymorphism Interaction Analysis (PIA): a method for investigating complex gene-gene interactions
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Leah Mechanic, Brian Luke, Julie Goodman, Stephen Chanock, Curtis Harris
    posted to epistasis snp software statistics by jyuh on 2008-03-29 11:53:27 as ** along with 2 people waszak omalbam
  • Exploiting the proteome to improve the genome-wide genetic analysis of epistasis in common human diseases.
    Human genetics, Vol. 124, No. 1. (August 2008), pp. 19-29.
    by KA Pattin, JH Moore
    posted to epistasis gwa proteomics by jyuh on 2008-07-16 15:50:39 as ** along with 1 person wilbur
  • Penalized logistic regression for detecting gene interactions
    Biostat (11 April 2007), kxm010.
    by Mee Y Park, Trevor Hastie
    posted to epistasis by jyuh on 2008-08-16 10:33:15 as ** along with 1 person StatAnika
  • A powerful and flexible multilocus association test for quantitative traits.
    Am J Hum Genet, Vol. 82, No. 2. (February 2008), pp. 386-397.
    by LC Kwee, D Liu, X Lin, D Ghosh, MP Epstein
    posted to qtl epistasis by jyuh on 2008-03-01 00:44:40 as **
  • Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies
    BMC Bioinformatics, Vol. 9 (21 July 2008), 315.
    by Li Ma, Birali H Runesha, Daniel Dvorkin, John R Garbe, Yang Da
    posted to qtl gwa epistasis by jyuh on 2008-07-25 08:37:02 as **
  • Odds ratio based multifactor-dimensionality reduction method for detecting gene-gene interactions
    Bioinformatics, Vol. 23, No. 1. (1 January 2007), pp. 71-76.
    by Yujin Chung, Seung Y Lee, Robert C Elston, Taesung Park
    posted to epistasis mdr by jyuh on 2008-03-29 12:03:58 as ** along with 3 people Ayest shigepong massivemayhem
  • A partial least-square approach for modeling gene-gene and gene-environment interactions when multiple markers are genotyped.
    Genetic epidemiology (9 July 2008)
    by Tao Wang, Gloria Ho, Kenny Ye, Howard Strickler, Robert C C Elston
    posted to epistasis gene-environment pls by jyuh on 2008-07-30 15:36:33 as **
  • A unified model for functional and statistical epistasis and its application in quantitative trait Loci analysis.
    Genetics, Vol. 176, No. 2. (June 2007), pp. 1151-1167.
    posted to epistasis functional-regression qtl by jyuh on 2008-07-29 05:04:38 as **
  • Genetic association tests in the presence of epistasis or gene-environment interaction.
    Genetic epidemiology (24 April 2008)
    by Kai Wang
    posted to epistasis gene-environment r software by jyuh on 2008-07-30 15:31:24 as **
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