Tag epistasis [193 articles] Export

Recent papers classified by the tag epistasis.

	Accelerating epistasis analysis in human genetics with consumer graphics hardware [My Copy] BMC Research Notes, Vol. 2, No. 1. (2009), 149. by Nicholas S. Armstrong, Casey Greene, Fabio Cancare, Jason Moore posted to wgsa genetics epistasis copmuting bioinformatics by slack---line on 2009-11-08 21:00:42 as
	The dynamics of adaptation on correlated fitness landscapes [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 44. (3 November 2009), pp. 18638-18643. by Sergey Kryazhimskiy, GaÅ¡per TkaÄik, Joshua B. Plotkin posted to neutral_evolution genome fitness_landscapes fitness_effects evolutionary_dynamics epistasis beneficial_mutations by tkeitt on 2009-11-04 15:51:53 as along with 4 people bpcusack zwang inquil samubernard
	Predictive rule inference for epistatic interaction detection in genome-wide association studies [My Copy] Bioinformatics (30 October 2009), btp622. by Xiang Wan, Can Yang, Qiang Yang, Hong Xue, Nelson L. S. Tang, Weichuan Yu posted to snp prediction interaction gwa epistasis by neils on 2009-11-02 04:16:37 as
	Finding the missing heritability of complex diseases [My Copy] Nature, Vol. 461, No. 7265. (08 October 2009), pp. 747-753. by Teri A. Manolio, Francis S. Collins, Nancy J. Cox, et al.David B. Goldstein, Lucia A. Hindorff, David J. Hunter, Mark I. McCarthy, Erin M. Ramos, Lon R. Cardon, Aravinda Chakravarti, Judy H. Cho, Alan E. Guttmacher, Augustine Kong, Leonid Kruglyak, Elaine Mardis, Charles N. Rotimi, Montgomery Slatkin, David Valle, Alice S. Whittemore, Michael Boehnke, Andrew G. Clark, Evan E. Eichler, Greg Gibson, Jonathan L. Haines, Trudy F. C. Mackay, Steven A. McCarroll, Peter M. Visscher posted to quantitative_traits epistasis by timflutre on 2009-10-30 16:25:37 as along with 15 people and 1 group daveGerrard leemachado lp2 natstreet ns6 balajis jclau liqbbi josepe daforerog fenghezi rdiaz carolep merpublic djkt Journal picks
	Genome complexity, robustness and genetic interactions in digital organisms. [My Copy] Nature, Vol. 400, No. 6745. (12 August 1999), pp. 661-664. by R. E. Lenski, C. Ofria, T. C. Collier, C. Adami posted to evolution epistasis complexity alife by tomhebbron on 2009-10-30 15:51:38 as
	Positive Epistasis Drives the Acquisition of Multidrug Resistance [My Copy] PLoS Genet, Vol. 5, No. 7. (24 July 2009), e1000578. by Sandra Trindade, Ana Sousa, Karina B. Xavier, Francisco Dionisio, Miguel G. Ferreira, Isabel Gordo posted to multidrug_resistance evolution epistasis bacteria by venancio on 2009-10-23 18:31:26 as
	Using biological networks to search for interacting loci in genome-wide association studies [My Copy] European Journal of Human Genetics, Vol. 17, No. 10. (11 March 2009), pp. 1231-1240. by Mathieu Emily, Thomas Mailund, Jotun Hein, Leif Schauser, Mikkel H. Schierup posted to snps epistatic_effects epistasis biological_networks by Geknitics on 2009-10-22 16:24:58 as along with 7 people and 1 group kimorley jo_davies daforerog psique guhjy frohike jdbowes Journal picks
	Epistasis and its implications for personal genetics. [My Copy] American journal of human genetics, Vol. 85, No. 3. (11 September 2009), pp. 309-320. by Jason H. Moore, Scott M. Williams posted to epistasis complex_traits complex_disease by daveGerrard on 2009-10-21 16:31:25 as along with 7 people chriswillmott guhjy cajunsushi daed pkonings daforerog jdbowes
	High-throughput genetic interaction mapping in the fission yeast Schizosaccharomyces pombe [My Copy] Nat Meth, Vol. 4, No. 10. (23 September 2007), pp. 861-866. by Assen Roguev, Marianna Wiren, Jonathan S. Weissman, Nevan J. Krogan posted to pombe mapping interaction epistatic epistasis emap by Keksle on 2009-10-15 18:27:53 as along with 8 people jbhiatt lbnc dchughes cjeans zwang kdang marck guhjy
	Epistasis [mdash] the essential role of gene interactions in the structure and evolution of genetic systems [My Copy] Nat Rev Genet, Vol. 9, No. 11. (November 2008), pp. 855-867. by Patrick C. Phillips posted to review primer gene-interactions epistasis by Zephyrus on 2009-10-10 03:34:26 as along with 12 people and 1 group guhjy misonneh maren daveGerrard dpollard lp2 xingxu pkonings jbhiatt yyby cheyloveday dchughes RockmanLab
	An epistatic ratchet constrains the direction of glucocorticoid receptor evolution [My Copy] Nature, Vol. 461, No. 7263. (24 September 2009), pp. 515-519. by Jamie T. Bridgham, Eric A. Ortlund, Joseph W. Thornton posted to epistasis by bpcusack on 2009-10-01 17:26:15 as along with 9 people and 1 group venancio merpublic docv cmzmasek jjray zwang stajich Annab stevanspringer Mycology
	Impact of Epistasis on Evolutionary Adaptation [My Copy] (18 Sep 2009) by Bjorn Ostman, Arend Hintze, Christoph Adami posted to simulation evolution epistasis adaptation by jjray on 2009-09-28 20:03:20 as along with 1 person docv
	Identification of heterotic metabolite QTL in <i>Arabidopsis thaliana</i> RIL and IL populations [My Copy] The Plant Journal, Vol. 59, No. 5. (2009), pp. 777-788. by Jan Lisec, Matthias Steinfath, Rhonda C. Meyer, et al.Joachim Selbig, Albrecht E. Melchinger, Lothar Willmitzer, Thomas Altmann posted to ril qtl heterosis epistasis by natstreet on 2009-09-28 12:17:34 as
	An algorithm for learning maximum entropy probability models of disease risk that efficiently searches and sparingly encodes multilocus genomic interactions [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2478-2485. by David J. Miller, Yanxin Zhang, Guoqiang Yu, et al.Yongmei Liu, Li Chen, Carl D. Langefeld, David Herrington, Yue Wang posted to interaction gwas epistasis by rdiaz on 2009-09-28 11:03:27 as along with 1 person guhjy
	Predicting the Evolution of Sex on Complex Fitness Landscapes [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (18 September 2009), e1000510. by Dusan Misevic, Roger D. Kouyos, Sebastian Bonhoeffer posted to sex epistasis by maren on 2009-09-26 19:21:46 as along with 3 people and 1 group dlobo scmelton bpcusack GEB
	From genotypes to genometypes: putting the genome back in genome-wide association studies [My Copy] European Journal of Human Genetics, Vol. 17, No. 10. (11 March 2009), pp. 1205-1206. by J. H. Moore posted to epistasis by jdbowes on 2009-09-24 12:27:59 as along with 2 people and 1 group qayub guhjy Journal picks
	Epistatic module detection for case-control studies: a Bayesian model with a Gibbs sampling strategy. [My Copy] PLoS genetics, Vol. 5, No. 5. (1 May 2009), e1000464. by Wanwan Tang, Xuebing Wu, Rui Jiang, Yanda Li posted to mcmc epistasis bayesian by rdiaz on 2009-09-23 16:26:03 as along with 5 people nuin guhjy bservin djkt psique
	Genome-wide association studies: Detecting gene-gene interactions that underlie human diseases. [My Copy] Nature reviews. Genetics, Vol. 10, No. 6. (12 May 2009), pp. 392-404. by Heather J. Cordell posted to teaching review interaction gwas epistasis by rdiaz on 2009-09-23 15:45:54 as along with 16 people and 3 groups lwaldron PabloMarin misonneh kimorley ilyashl pkonings lp2 turnersd akundaje Zephyrus daforerog roys colmryan fenghezi jbhiatt guhjy Journal picks MGEL Reading Roswell Cancer Crosstalk
	PBEAM: A parallel implementation of BEAM for genome-wide inference of epistatic interactions. [My Copy] Bioinformation, Vol. 3, No. 8. (2009), pp. 349-351. by Tao Peng, Pufeng Du, Yanda Li posted to software gwa epistasis by guhjy on 2009-09-23 01:54:05 as
	Detecting purely epistatic multi-locus interactions by an omnibus permutation test on ensembles of two-locus analyses [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 294. by Waranyu Wongseree, Anunchai Assawamakin, Theera Piroonratana, Saravudh Sinsomros, Chanin Limwongse, Nachol Chaiyaratana posted to epistasis by rdiaz on 2009-09-18 16:26:57 as
	From classical genetics to quantitative genetics to systems biology: modeling epistasis. [My Copy] PLoS genetics, Vol. 4, No. 3. (March 2008) by David L. Aylor, Zhao-Bang B. Zeng posted to systems genetics epistasis biology by ptrobajo on 2009-09-17 09:24:04 as along with 3 people Ayest xingxu guhjy
	Contribution of genetic effects to genetic variance components with epistasis and linkage disequilibrium [My Copy] BMC Genetics, Vol. 10, No. 1. (04 September 2009), 52. by Tao Wang, Zhao B. Zeng posted to variance_components qtl ld epistasis by pkonings on 2009-09-15 10:26:24 as
	Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 405-410. by Assen Roguev, Sourav Bandyopadhyay, Martin Zofall, et al.Ke Zhang, Tamas Fischer, Sean R. Collins, Hongjing Qu, Michael Shales, Han-Oh Park, Jacqueline Hayles, Kwang-Lae Hoe, Dong-Uk Kim, Trey Ideker, Shiv I. Grewal, Jonathan S. Weissman, Nevan J. Krogan posted to yeast protein_complex protein-protein_interaction network_genetic network_evolution module_rewiring module epistasis by biomcgary on 2009-09-02 23:20:18 as along with 15 people dakelley ajbattle nzm Keksle jbhiatt lflorez roys sjung tmmurali zwang marck caseybrown emptyhb bpcusack brembs
	Robustness and epistasis in mutation-selection models [My Copy] Physical Biology, Vol. 6, No. 3. (September 2009), 036007. by Andrea Wolff, Joachim Krug posted to robustness mathematical_model evolution epistasis biophysics by jjray on 2009-08-23 14:12:56 as
	High-throughput, quantitative analyses of genetic interactions in E. coli [My Copy] Nat Meth, Vol. 5, No. 9. (1 September 2008), pp. 781-787. by Athanasios Typas, Robert J. Nichols, Deborah A. Siegele, et al.Michael Shales, Sean R. Collins, Bentley Lim, Hannes Braberg, Natsuko Yamamoto, Rikiya Takeuchi, Barry L. Wanner, Hirotada Mori, Jonathan S. Weissman, Nevan J. Krogan, Carol A. Gross posted to epistasis emap e-coli by colmryan on 2009-08-20 16:38:33 as along with 5 people lbnc blwanner nedwards guhjy carlk
	Exploring the performance of Multifactor Dimensionality Reduction in large scale SNP studies and in the presence of genetic heterogeneity among epistatic disease models. [My Copy] Human heredity, Vol. 67, No. 3. (2009), pp. 183-192. by Todd L. Edwards, Kenneth Lewis, Digna R. Velez, Scott Dudek, Marylyn D. Ritchie posted to epistasis genetiucs mdr by guhjy on 2009-08-09 14:17:38 as
	Detecting epistatic interactions contributing to human gene expression using the CEPH family data. [My Copy] BMC proceedings, Vol. 1 Suppl 1 (2007) by Hua Li, Guimin Gao, Jian Li, Grier P. Page, Kui Zhang posted to epistasis family by guhjy on 2009-08-09 03:20:34 as
	Genetic Properties of the Maize Nested Association Mapping Population [My Copy] Science, Vol. 325, No. 5941. (7 August 2009), pp. 737-740. by Michael D. Mcmullen, Stephen Kresovich, Hector S. Villeda, et al.Peter Bradbury, Huihui Li, Qi Sun, Sherry Flint-Garcia, Jeffry Thornsberry, Charlotte Acharya, Christopher Bottoms, Patrick Brown, Chris Browne, Magen Eller, Kate Guill, Carlos Harjes, Dallas Kroon, Nick Lepak, Sharon E. Mitchell, Brooke Peterson, Gael Pressoir, Susan Romero, Marco O. Rosas, Stella Salvo, Heather Yates, Mark Hanson, Elizabeth Jones, Stephen Smith, Jeffrey C. Glaubitz, Major Goodman, Doreen Ware, James B. Holland, Edward S. Buckler posted to centromere epistasis genetic_variation heterozygosity hybrid_vigor linkage_disequilibrium mutation mutation_small_effect phenotype plant by biomcgary on 2009-08-07 18:03:09 as
	GenePath: a system for inference of genetic networks and proposal of genetic experiments. [My Copy] Artificial intelligence in medicine, Vol. 29, No. 1-2. (t 2003), pp. 107-130. by Blaz Zupan, Ivan Bratko, Janez Demsar, et al.Peter Juvan, Tomaz Curk, Urban Borstnik, J. Robert Beck, John Halter, Adam Kuspa, Gad Shaulsky posted to epistasis gene-networks mutants networks by bfish on 2009-07-30 15:47:35 as
	Modularity and interactions in the genetics of gene expression [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6441-6446. by Oren Litvin, Helen C. Causton, Bo-Juen Chen, Dana Pe'er posted to epistasis genetics software by guhjy on 2009-07-22 04:35:05 as along with 12 people frohike dipenps coela Scis0000002 alweber daforerog TRHvidsten trfield deanmalmgren shikin provero roys
	Generating Genome-Scale Candidate Gene Lists for Pharmacogenomics [My Copy] Clin Pharmacol Ther, Vol. 86, No. 2. (15 April 2009), pp. 183-189. by N. T. Hansen, S. Brunak, R. B. Altman posted to epistasis gxg pharmacogenetics gwas by misonneh on 2009-07-22 03:22:22 as along with 1 person guhjy
	Antagonistic epistasis for ecophysiological trait differences between <i>Solanum</i> species [My Copy] New Phytologist, Vol. 183, No. 3. (2009), pp. 789-802. by Christopher D. Muir, Leonie C. Moyle posted to epistasis read solanum by maren on 2009-07-21 15:37:35 as
	Testing association with interactions by partitioning chi-squares. [My Copy] Annals of human genetics, Vol. 73, No. 1. (January 2009), pp. 109-117. by Y. Yang, C. He, J. Ott posted to epistasis snp stats by guhjy on 2009-07-12 10:55:49 as
	Prediction and Interaction in Complex Disease Genetics: Experience in Type 1 Diabetes [My Copy] PLoS Genet, Vol. 5, No. 7. (3 July 2009), e1000540. by David G. Clayton posted to complex_disease epistasis genetics review by psique on 2009-07-11 15:08:11 as along with 5 people and 1 group zufar merpublic ptrobajo rdiaz kimorley Journal picks
	Evolutionary plasticity of genetic interaction networks [My Copy] Nat Genet, Vol. 40, No. 4. (April 2008), pp. 390-391. by Julia Tischler, Ben Lehner, Andrew G. Fraser posted to epistasis evolution genetics plasticity by aheilbut on 2009-06-18 19:38:04 as along with 7 people and 1 group dakelley saket caseybrown smgomez ptrobajo emptyhb zwang GomezLab
	MUC1-induced alterations in a lipid metabolic gene network predict response of human breast cancers to tamoxifen treatment. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 14. (7 April 2009), pp. 5837-5841. by S. P. Pitroda, N. N. Khodarev, M. A. Beckett, D. W. Kufe, R. R. Weichselbaum posted to breast epistasis pharmacogenetics statistics tamoxifen gwas by misonneh on 2009-06-08 02:46:13 as
	The Evolution of Canalization and the Breaking of Von Baer's Laws: Modeling the Evolution of Development with Epistasis [My Copy] Evolution, Vol. 52, No. 3. (1998), pp. 647-656. by Sean H. Rice posted to canalization development epistasis evolution phenotype by jjray on 2009-06-04 23:12:42 as along with 2 people antonkratz shivakumar3_14
	Global histone modifications predict prognosis of resected non small-cell lung cancer. [My Copy] Journal of clinical oncology : official journal of the American Society of Clinical Oncology, Vol. 25, No. 28. (1 October 2007), pp. 4358-4364. by F. Barlési, G. Giaccone, M. I. Gallegos-Ruiz, et al.A. Loundou, S. W. Span, P. Lefesvre, F. A. Kruyt, J. A. Rodriguez posted to epigenetics epistasis histone lung prognosis time_to_event by misonneh on 2009-06-04 14:37:01 as
	Failure to replicate a genetic association may provide important clues about genetic architecture. [My Copy] PloS one, Vol. 4, No. 6. (2 June 2009), e5639. by Casey S. Greene, Nadia M. Penrod, Scott M. Williams, Jason H. Moore posted to epistasis by turnersd on 2009-06-04 13:45:36 as along with 2 people guhjy psique
	Who's afraid of epistasis? [My Copy] Nature genetics, Vol. 14, No. 4. (December 1996), pp. 371-373. by W. N. Frankel, N. J. Schork posted to epistasis rotation carrie by turnersd on 2009-05-27 20:43:55 as
	Genetics, statistics and human disease: analytical retooling for complexity. [My Copy] Trends in genetics : TIG, Vol. 20, No. 12. (December 2004), pp. 640-647. by T. A. Thornton-Wells, J. H. Moore, J. L. Haines posted to epistasis methods review rotation carrie by turnersd on 2009-05-27 20:42:39 as along with 1 person daforerog
	The ubiquitous nature of epistasis in determining susceptibility to common human diseases. [My Copy] Human heredity, Vol. 56, No. 1-3. (2003), pp. 73-82. by J. H. Moore posted to epistasis rotation carrie by turnersd on 2009-05-27 20:40:19 as along with 2 people and 1 group Zephyrus misonneh Roswell Cancer Crosstalk
	Exploiting the proteome to improve the genome-wide genetic analysis of epistasis in common human diseases [My Copy] Human Genetics, Vol. 124, No. 1. (1 August 2008), pp. 19-29. by Kristine Pattin, Jason Moore posted to epistasis genomics gwas proteomics by psique on 2009-05-20 22:51:39 as along with 4 people daed daforerog wilbur guhjy
	Speciation Genetics: Epistasis, Conflict and the Origin of Species [My Copy] Current Biology, Vol. 17, No. 4. (20 February 2007), pp. R125-R127. by Daven C. Presgraves posted to epistasis speciation by maren on 2009-05-18 07:45:34 as
	Overview of QTL detection in plants and tests for synergistic epistatic interactions. [My Copy] Genetica (10 August 2008) by Jean-Luc L. Jannink, Laurence Moreau, Gilles Charmet, Alain Charcosset posted to epistasis gxg_empirical gxg_qtl by maren on 2009-05-12 07:11:04 as along with 1 person rjlawren
	A simple model of co-evolutionary dynamics caused by epistatic selection. [My Copy] Journal of theoretical biology, Vol. 250, No. 1. (7 January 2008), pp. 48-65. by G. Schlosser, G. P. Wagner posted to epistasis gxg_conceptual gxg_statistical by maren on 2009-05-12 07:07:06 as
	Distributions of epistasis in microbes fit predictions from a fitness landscape model [My Copy] Nature Genetics, Vol. 39, No. 4. (18 March 2007), pp. 555-560. by Guillaume Martin, Santiago F. Elena, Thomas Lenormand posted to epistasis gxg_empirical by maren on 2009-05-12 07:05:43 as along with 3 people scmelton ramensky bpcusack
	Analysis of epistatic interactions and fitness landscapes using a new geometric approach. [My Copy] BMC evolutionary biology, Vol. 7 (13 April 2007), 60. by Niko Beerenwinkel, Lior Pachter, Bernd Sturmfels, Santiago F. Elena, Richard E. Lenski posted to epistasis gxg_conceptual by maren on 2009-05-12 07:04:26 as along with 6 people druvus Ayest msierk ramensky elm pszw
	A framework for evolutionary systems biology [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 27. by Laurence Loewe posted to epistasis gxg_conceptual by maren on 2009-05-12 07:02:48 as along with 16 people and 1 group tomhebbron pawelsobko leemond31 gwenknight Scis0000002 agomez dswan bertelsen JeremyZucker JoeDunckley Zephyrus michaelbarton trfield jjray VGreiff druvus Roswell Cancer Crosstalk
	Theoretical Approaches to the Evolution of Development and Genetic Architecture [My Copy] Annals of the New York Academy of Sciences, Vol. 1133, No. 1. (June 2008), pp. 67-86. by Rice, H. Sean posted to epistasis gxg_conceptual model by maren on 2009-05-12 07:01:48 as

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evolution	31
review	26
statistics	25
genetics	24
qtl	18
snp	15
gwas	12
interaction	11
network	11
gene-gene-interactions	10
adaptation	9
gwa	9
yeast	9
association	8
rockman_journal_club	8
stats	8
gxe	7
gxg	7
gxg_statistical	7
methods	7
modeling	7
pharmacogenetics	7
robustness	7
software	7
cancer-crosstalk	6
genomics	6
mdr	6
recombination	6
sex	6
transcription	6
gene-environment	5
gene-networks	5
genome	5
gxg_conceptual	5
regulation	5
speciation	5
alife	4
dominance	4
eqtl	4
grn	4
gxg_empirical	4
landscape	4
metabolism	4
method	4
model	4
nklandscapes	4
problem_analysis	4
bayes	3
bayesian	3
bioinformatics	3
breast	3
canalization	3
carrie	3
case-control	3
cis_vs_trans	3
data_mining	3
emap	3
epigenetics	3
evolution-of-sex	3
gene-regulation	3
genetic	3
multiplicity	3
pathway	3
phenotype	3
quantitative_genetics	3
read	3
regulatory_polymorphism	3
rotation	3
selection	3
systems	3
-virus	2
adaptive_landscape	2
antagonistic	2
association_mapping	2
autism	2
bladder	2
cancer	2
design	2
development	2
eisen_journal_club	2
estrogen	2
etiology	2
evolutionary_dynamics	2
factor	2
genotype	2
itgb3	2
mapping	2
matt_presented	2
mcmc	2
mutation	2
nkc-model	2
postzygotic-isolation	2
problem_difficulty	2
proteomics	2
quantitative_traits	2
r	2
reproductive-isolation	2
round_robin	2
slc6a4	2
snps	2

Tag epistasis [193 articles] Export

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