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	Towards the prediction of essential genes by integration of network topology, cellular localization and biological process information [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 290. by Marcio Acencio, Ney Lemke posted to essentiality by richardbickerton on 2009-12-17 11:08:37 as along with 6 people icecrown zchen kshameer thegoose reyez iris_2001
	Lethality and centrality in protein networks [My Copy] Nature, Vol. 411, No. 6833. (03 May 2001), pp. 41-42. by H. Jeong, S. P. Mason, A. L. Barabasi, Z. N. Oltvai posted to ppi lethality essentiality centrality by npozo on 2009-12-10 20:28:54 as along with 25 people and 2 groups pablocarb feshbach mgomes lawraga deanmalmgren jmenche muraken davidecellai diamantis dylanwalker jiny kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre ruvido gcalda grahamc lpfernandes Evangelia iris_2001 cerca ethkim EBI-regulation GeschwindLab
	Localized network centrality and essentiality in the yeast protein interaction network [My Copy] PROTEOMICS, Vol. 9999, No. 999A. (2009), NA. by Keunwan Park, Dongsup Kim posted to yeas ppi essentiality centrality by npozo on 2009-12-10 19:28:35 as along with 1 person minostro
	The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes [My Copy] Science, Vol. 320, No. 5874. (18 April 2008), pp. 362-365. by Maureen E. Hillenmeyer, Eula Fung, Jan Wildenhain, et al.Sarah E. Pierce, Shawn Hoon, William Lee, Michael Proctor, St, Mike Tyers, Daphne Koller, Russ B. Altman, Ronald W. Davis, Corey Nislow, Guri Giaever posted to yeast phenotype essentiality by daveGerrard on 2009-11-05 11:08:20 as along with 17 people and 1 group bpcusack jdoconnell rdowell lawraga ajbattle sschurer ocs emptyhb tmmurali nfreed bala lp2 roys stajich chasmand guhjy raiyar Mycology
	Evolution of gene sequence and gene expression are not correlated in yeast [My Copy] Trends in Genetics, Vol. 24, No. 3. (March 2008), pp. 109-113. by I. Tirosh, N. Barkai posted to yeast rate_of_evolution expression_evolution essentiality by daveGerrard on 2009-10-28 11:16:15 as along with 4 people roys djkt gjuggler huali
	The origins and evolution of functional modules: lessons from protein complexes. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 361, No. 1467. (29 March 2006), pp. 507-517. by Jose B. Pereira-Leal, Emmanuel D. Levy, Sarah A. Teichmann posted to robustness protein-protein_interaction network_evolution network module_rewiring module modularity essentiality by biomcgary on 2009-09-30 21:50:29 as along with 6 people saket agustinarce bicko choonpeng cjeans cmzmasek
	Genome-scale gene/reaction essentiality and synthetic lethality analysis [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Patrick F. Suthers, Alireza Zomorrodi, Costas D. Maranas posted to synthetic networks lethality interactions genetic essentiality by robertrentzsch to the group Orengo Group Journal Picks on 2009-09-11 11:09:30 as along with 2 people pinney biomcgary
	Prediction of conditional gene essentiality through graph theoretical analysis of genome-wide functional linkages [My Copy] Mol. BioSyst. (2009) by P. Manimaran, Shubhada R. Hegde, Shekhar C. Mande posted to essentiality by richardbickerton on 2009-08-28 14:36:03 as
	The Evolution of Gene Expression QTL in Saccharomyces cerevisiae [My Copy] PLoS ONE, Vol. 2, No. 8. (2007), e678. by James Ronald, Joshua M. Akey posted to yeast variation selection_purifying selection_positive selection qtl essentiality eqtl codon_bias by biomcgary on 2009-08-21 17:24:48 as along with 1 person myzhang
	The human disease network. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690. by Kwang-Il I. Goh, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, Albert-László L. Barabási posted to protein-protein_interaction network module essentiality disease by biomcgary on 2009-08-19 21:00:07 as along with 41 people and 9 groups icecrown frohike robfsouza bertelsen smichan pawelsobko CurAbility Scis0000002 qluo cbforrest daforerog nedwards Dulcinea saket kaarsinogen roys Yanno guhjy aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele shoshin shikin nolodie mingzhi carlk yaredo Network Analysis of Genes Regulated in Renal Diseases Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab ic4 generif_paper GomezLab
	Evolution of Mutational Robustness in the Yeast Genome: A Link to Essential Genes and Meiotic Recombination Hotspots [My Copy] PLoS Genet, Vol. 5, No. 6. (26 Jun 2009), e1000533. by Philipp J. Keller, Michael Knop posted to essentiality evolution gene hotspots meiosis mutation recombination robustness by robfsouza on 2009-08-05 17:05:14 as along with 1 person jjray
	Essential genes on metabolic maps. [My Copy] Current opinion in biotechnology, Vol. 17, No. 5. (13 October 2006), pp. 448-456. by Svetlana Gerdes, Robert Edwards, Michael Kubal, Michael Fonstein, Rick Stevens, Andrei Osterman posted to essentiality metabolomics pathways target_prioritization by richardbickerton on 2009-07-30 12:34:22 as along with 3 people pablocarb aswin westoll
	Life without a wall or division machine in Bacillus subtilis [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 849-853. by M. Leaver, P. Dominguez-Cuevas, J. M. Coxhead, R. A. Daniel, J. Errington posted to bacteria cell_cycle cell_wall essentiality essentiality_conditional morphology mutation by biomcgary on 2009-07-24 15:30:36 as along with 3 people abhishek_tiwari bobturner bertelsen
	The multiple gene duplication problem revisited [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i132-138. by Mukul S. Bansal, Oliver Eulenstein posted to essentiality by anazhu86 on 2009-07-22 17:58:06 as along with 6 people and 1 group wiedenhoeft thegoose2 druvus bpcusack tharris stajich Mycology
	Differences in duplication age distributions between human GPCRs and their downstream genes from a network prospective. [My Copy] BMC genomics, Vol. 10 Suppl 1, No. Suppl 1. (2009), S14. by Yong Huang, Ying Zheng, Zhixi Su, Xun Gu posted to essentiality by anazhu86 on 2009-07-22 13:15:25 as along with 1 person gjuggler
	Impacts of gene essentiality, expression pattern, and gene compactness on the evolutionary rate of mammalian proteins. [My Copy] Molecular biology and evolution, Vol. 23, No. 11. (Nov 2006), pp. 2072-2080. by Ben-Yang Y. Liao, Nicole M. Scott, Jianzhi Zhang posted to essentiality evolutionary gene length mammals rate specificity transcription by robfsouza on 2009-06-16 23:17:48 as along with 1 person daveGerrard
	Comprehensive transposon mutant library of Pseudomonas aeruginosa. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 24. (25 November 2003), pp. 14339-14344. by Michael A. Jacobs, Ashley Alwood, Iyarit Thaipisuttikul, et al.David Spencer, Eric Haugen, Stephen Ernst, Oliver Will, Rajinder Kaul, Christopher Raymond, Ruth Levy, Liu Chun-Rong, Donald Guenthner, Donald Bovee, Maynard V. Olson, Colin Manoil posted to essentiality pseudomas_aeruginosa by richardbickerton on 2009-04-27 15:05:53 as
	An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 8. (21 February 2006), pp. 2833-2838. by Nicole T. Liberati, Jonathan M. Urbach, Sachiko Miyata, et al.Daniel G. Lee, Eliana Drenkard, Gang Wu, Jacinto Villanueva, Tao Wei, Frederick M. Ausubel posted to essentiality pseudomas_aeruginosa by richardbickerton on 2009-04-27 15:04:54 as along with 1 person bakakaj
	A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1. [My Copy] Molecular systems biology, Vol. 4 (2008) by V. de Berardinis, D. Vallenet, V. Castelli, et al.M. Besnard, A. Pinet, C. Cruaud, S. Samair, C. Lechaplais, G. Gyapay, C. Richez, M. Durot, A. Kreimeyer, F. Le Fèvre, V. Schächter, V. Pezo, V. Döring, C. Scarpelli, C. Médigue, G. N. Cohen, P. Marlière, M. Salanoubat, J. Weissenbach posted to essentiality by richardbickerton on 2009-04-27 15:03:17 as
	DEG: a database of essential genes. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004) by R. Zhang, H. Y. Ou, C. T. Zhang posted to essentiality by richardbickerton on 2009-04-27 15:01:37 as
	Buffering by gene duplicates: an analysis of molecular correlates and evolutionary conservation. [My Copy] BMC genomics, Vol. 9 (16 December 2008), 609. by K. Hannay, E. M. Marcotte, C. Vogel posted to duplication essentiality by tny on 2008-12-22 04:53:02 as along with 9 people michaelbarton gurprit_raunu dquest bpcusack biomcgary sylvainforet natstreet JustinCrocker druvus
	Surfing the p53 network [My Copy] Nature, Vol. 408, No. 6810. (16 November 2000), pp. 307-310. by Bert Vogelstein, David Lane, Arnold J. Levine posted to cancer essentiality lma_essentiality p53 by dylanwalker on 2008-10-06 21:06:39 as along with 8 people joannaperkins myzhang tries jstajic textoris bayesian Dualsystems maralena
	Why do Hubs Tend to be Essential in Protein Networks? [My Copy] PLoS Genetics, Vol. preprint, No. 2006. (1 April 2006), e88.eor. by Xionglei He, Jianzhi Zhang posted to essentiality lma_essentiality ppi by dylanwalker on 2008-10-06 21:02:50 as along with 2 people and 2 groups bsmagic annacarina07 Bioinformatics bioinplant
	Genome-Wide Experimental Determination of Barriers to Horizontal Gene Transfer [My Copy] Science, Vol. 318, No. 5855. (30 November 2007), pp. 1449-1452. by Rotem Sorek, Yiwen Zhu, Christopher J. Creevey, Pilar M. Francino, Peer Bork, Edward M. Rubin posted to essentiality gene_duplication lethality by entropy on 2008-07-16 16:06:20 as along with 6 people operon djkt bluto Katje emptyhb madhadron
	Genomic analysis of essentiality within protein networks. [My Copy] Trends Genet, Vol. 20, No. 6. (June 2004), pp. 227-231. by H. Yu, D. Greenbaum, H. Xin Lu, X. Zhu, M. Gerstein posted to centrality essentiality ppi topology by dylanwalker on 2008-07-07 17:20:10 as along with 5 people and 1 group apaydin niolis nickluscombe grahamc shikin EBI-regulation
	Error and attack tolerance of complex networks [My Copy] Nature, Vol. 406, No. 6794. (27 July 2000), pp. 378-382. by Reka Albert, Hawoong Jeong, Albert-Laszlo Barabasi posted to attack centrality essentiality robustness topology by dylanwalker on 2008-07-07 17:18:36 as along with 20 people and 2 groups makukha mrkn lawraga sergiun shung kaarsinogen korakot alexisgallagher shivaram cmmorel balicea yoh mmt jaspervoskuilen timflutre thehajime karfunkel Evangelia stefanoallesina tjpp Philosophy_of_Information Blog_and_Wiki_Research
	Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. [My Copy] Molecular biology and evolution, Vol. 22, No. 4. (1 April 2005), pp. 803-806. by Matthew W. Hahn, Andrew D. Kern posted to bottlenecks centrality essentiality ppi topology by dylanwalker on 2008-07-07 17:14:22 as along with 6 people lptolik daveGerrard mgomes chica shung Evangelia
	The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics [My Copy] PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e59.eor. by Haiyuan Yu, Philip M. Kim, Emmett Sprecher, Valery Trifinov, Mark Gerstein posted to bottlenecks centrality essentiality ppi topology by dylanwalker on 2008-07-07 17:11:58 as along with 5 people Sonix grahamc zwang Pao-Yang taiei688
	Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655 [My Copy] J. Bacteriol., Vol. 185, No. 19. (1 October 2003), pp. 5673-5684. by S. Y. Gerdes, M. D. Scholle, J. W. Campbell, et al.G. Balazsi, E. Ravasz, M. D. Daugherty, A. L. Somera, N. C. Kyrpides, I. Anderson, M. S. Gelfand, A. Bhattacharya, V. Kapatral, M. D'Souza, M. V. Baev, Y. Grechkin, F. Mseeh, M. Y. Fonstein, R. Overbeek, A. L. Barabasi, Z. N. Oltvai, A. L. Osterman posted to ecoli essentiality by dylanwalker on 2008-07-06 02:27:38 as along with 1 person BarrosH
	Functional profiling of the Saccharomyces cerevisiae genome [My Copy] Nature, Vol. 418, No. 6896. (25 July 2002), pp. 387-391. by Guri Giaever, Angela M. Chu, Li Ni, et al.Carla Connelly, Linda Riles, Steeve Veronneau, Sally Dow, Ankuta Lucau-Danila, Keith Anderson, Bruno Andre, Adam P. Arkin, Anna Astromoff, Mohamed El Bakkoury, Rhonda Bangham, Rocio Benito, Sophie Brachat, Stefano Campanaro, Matt Curtiss, Karen Davis, Adam Deutschbauer, Karl-Dieter Entian, Patrick Flaherty, Francoise Foury, David J. Garfinkel, Mark Gerstein, Deanna Gotte, Ulrich Guldener, Johannes H. Hegemann, Svenja Hempel, Zelek Herman, Daniel F. Jaramillo, Diane E. Kelly, Steven L. Kelly, Peter Kotter, Darlene LaBonte, David C. Lamb, Ning Lan, Hong Liang, Hong Liao, Lucy Liu, Chuanyun Luo, Marc Lussier, Rong Mao, Patrice Menard, Siew L. Ooi, Jose L. Revuelta, Christopher J. Roberts, Matthias Rose, Petra Ross-Macdonald, Bart Scherens, Greg Schimmack, Brenda Shafer, Daniel D. Shoemaker, Sharon Sookhai-Mahadeo, Reginald K. Storms, Jeffrey N. Strathern, Giorgio Valle, Marleen Voet, Guido Volckaert, Ching-yun Wang, Teresa R. Ward, Julie Wilhelmy, Elizabeth A. Winzeler, Yonghong Yang, Grace Yen, Elaine Youngman, Kexin Yu, Howard Bussey, Jef D. Boeke, Michael Snyder, Peter Philippsen, Ronald W. Davis, Mark Johnston posted to essentiality genefunctino scerevisiae by dylanwalker on 2008-07-06 02:25:54 as along with 16 people and 3 groups michaelbarton myzhang thegoose2 mdstobbe tharris pcahan1 lfriedl balajis rebeccahainess nirfriedman koller raiyar cjeans jiny hplatero chasmand C. elegans / WormBase kdl steinmetzlab
	Predicting essential genes in fungal genomes. [My Copy] Genome research, Vol. 16, No. 9. (1 September 2006), pp. 1126-1135. by Michael Seringhaus, Alberto Paccanaro, Anthony Borneman, Michael Snyder, Mark Gerstein posted to essentiality ml by saket on 2008-06-01 03:59:01 as along with 5 people and 1 group paccanarolab olympos GustavoLacerda dbenn balicea Paccanaro Lab
	Protein networks in disease. [My Copy] Genome research, Vol. 18, No. 4. (1 April 2008), pp. 644-652. by Trey Ideker, Roded Sharan posted to topology recomb protein ppi network essentiality disease-network by frohike on 2008-04-16 13:18:48 as along with 27 people shikin carlk isimpson chica saket zufar kaarsinogen giovenko guhjy balicea tmmurali Borelli jwdietrich bootsy nedwards roys mclarenv phoenixzxl brianb schuylrp jfr paolomarcatili gracio thomaskelder ptrobajo raiyar zwang
	Predicting synthetic rescues in metabolic networks [My Copy] Mol Syst Biol, Vol. 4 (12 February 2008) by Adilson E. Motter, Natali Gulbahce, Eivind Almaas, Albert-Laszlo Barabasi posted to essentiality fba by westoll on 2008-03-06 12:52:14 as along with 10 people lflorez kentsis zwang bootsy biomcgary cabbagezs shikin shung debasis tmmurali
	Human Transcription Factors Contain a High Fraction of Intrinsically Disordered Regions Essential for Transcriptional Regulation. [My Copy] J Mol Biol (25 April 2006) by Yoshiaki Minezaki, Keiichi Homma, Akira R R. Kinjo, Ken Nishikawa posted to disordered_protein essentiality protein-protein_interaction protein_structure transcription by biomcgary on 2008-01-14 20:44:41 as along with 2 people and 1 group hsekiguc oannes Regulomics_UCHSC
	Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli [My Copy] J. Bacteriol., Vol. 188, No. 23. (1 December 2006), pp. 8259-8271. by Andrew R. Joyce, Jennifer L. Reed, Aprilfawn White, et al.Robert Edwards, Andrei Osterman, Tomoya Baba, Hirotada Mori, Scott A. Lesely, Bernhard O. Palsson, Sanjay Agarwalla posted to essentiality genes by lylu on 2007-12-29 05:48:29 as along with 1 person JeremyZucker
	Essential genes of a minimal bacterium [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 2. (10 January 2006), pp. 425-430. by John I. Glass, Nacyra Assad-Garcia, Nina Alperovich, et al.Shibu Yooseph, Matthew R. Lewis, Mahir Maruf, Clyde A. Hutchison, Hamilton O. Smith, J. Craig Venter posted to essentiality minimal-genome by westoll on 2007-11-14 13:34:24 as along with 11 people and 2 groups Scis0000002 azazello jwm balicea JKelly555 hillevi famoreira nurban kevinchannon stringertheory mcox Radiation_Damage Stressosome
	Global transposon mutagenesis and a minimal Mycoplasma genome. [My Copy] Science (New York, N.Y.), Vol. 286, No. 5447. (10 December 1999), pp. 2165-2169. by C. A. Hutchison, S. N. Peterson, S. R. Gill, et al.R. T. Cline, O. White, C. M. Fraser, H. O. Smith, J. C. Venter posted to essentiality minimal-genome by westoll on 2007-11-14 13:32:48 as along with 3 people stefanorb antonkratz wenhan
	Transposon-based approaches to identify essential bacterial genes [My Copy] Trends in Microbiology, Vol. 8, No. 11. (1 November 2000), pp. 521-526. by Nicholas Judson, John J. Mekalanos posted to essentiality minimal-genome by westoll on 2007-11-09 15:41:03 as
	Evolutionary and Physiological Importance of Hub Proteins [My Copy] PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e88. by Nizar N. Batada, Laurence D. Hurst, Mike Tyers posted to essentiality hub protein_network by aswin on 2006-07-20 10:38:41 as along with 8 people lptolik davidecellai diamantis phoenixzxl IbnBio lpfernandes Evangelia Ema
	Functional discovery via a compendium of expression profiles. [My Copy] Cell, Vol. 102, No. 1. (7 July 2000), pp. 109-126. by T. R. Hughes, M. J. Marton, A. R. Jones, et al.C. J. Roberts, R. Stoughton, C. D. Armour, H. A. Bennett, E. Coffey, H. Dai, Y. D. He, M. J. Kidd, A. M. King, M. R. Meyer, D. Slade, P. Y. Lum, S. B. Stepaniants, D. D. Shoemaker, D. Gachotte, K. Chakraburtty, J. Simon, M. Bard, S. H. Friend posted to essentiality yeast by nickluscombe to the group EBI-regulation on 2006-04-12 09:32:14 as along with 12 people and 2 groups svozil raiyar pengchy camster lfriedl nirfriedman patrycjam patrycja_missiuro naegele chasmand roys TheresaNiederberger dbk-lab kdl
	Exploration of essential gene functions via titratable promoter alleles. [My Copy] Cell, Vol. 118, No. 1. (9 July 2004), pp. 31-44. by S. Mnaimneh, A. P. Davierwala, J. Haynes, et al.J. Moffat, W. T. Peng, W. Zhang, X. Yang, J. Pootoolal, G. Chua, A. Lopez, M. Trochesset, D. Morse, N. J. Krogan, S. L. Hiley, Z. Li, Q. Morris, J. Grigull, N. Mitsakakis, C. J. Roberts, J. F. Greenblatt, C. Boone, C. A. Kaiser, B. J. Andrews, T. R. Hughes posted to essentiality yeast by nickluscombe to the group EBI-regulation on 2006-04-12 09:24:54 as along with 4 people and 1 group michaelbarton raiyar irenas chasmand dbk-lab

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yeast	15
network	8
ppi	8
centrality	7
robustness	6
gene	5
topology	5
duplication	4
evolution	4
genome	4
lethality	4
minimal-genome	4
pseudomas_aeruginosa	4
bioinformatics	3
development	3
lma_essentiality	3
protein-protein_interaction	3
redundancy	3
vertebrates	3
bottlenecks	2
essentiality_conditional	2
genetic	2
interactions	2
metabolomics	2
module	2
mutation	2
networks	2
pathways	2
protein-protein	2
synthetic	2
target_prioritization	2
transcription	2
attack	1
bacteria	1
barabasi	1
cancer	1
cell_cycle	1
cell_wall	1
codon_bias	1
disease	1
disease-network	1
disordered_protein	1
dispensability	1
e_coli	1
ecoli	1
eqtl	1
evolutionary	1
expression_evolution	1
fba	1
fitness	1
flux_balance	1
gene_duplication	1
genefunctino	1
genes	1
genome_wide	1
hotspots	1
hub	1
humans	1
length	1
mammals	1
meiosis	1
metabolism	1
ml	1
modularity	1
module_rewiring	1
morphology	1
multi_drug_resistance	1
network_evolution	1
p53	1
phenotype	1
phenotype_variation	1
protein	1
protein_network	1
protein_structure	1
qtl	1
rate	1
rate_of_evolution	1
recomb	1
recombination	1
scerevisiae	1
selection	1
selection_positive	1
selection_purifying	1
specificity	1
synthetic_lethal	1
synthetic_rescue	1
systems_biology	1
variation	1
yeas	1

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