Tag evolutionary-rate [29 articles] Export

Recent papers classified by the tag evolutionary-rate.

	Genome evolution and adaptation in a long-term experiment with Escherichia coli [My Copy] Nature, Vol. 461, No. 7268. (18 October 2009), pp. 1243-1247. by Jeffrey E. Barrick, Dong S. Yu, Sung H. Yoon, et al.Haeyoung Jeong, Tae K. Oh, Dominique Schneider, Richard E. Lenski, Jihyun F. Kim posted to srs-resequencing evolutionary-rate ecoli by michaelbarton to the group BergmanLab on 2009-10-19 16:52:32 as along with 32 people and 4 groups aprasad gjuggler pmalkus dokky samubernard ilyashl biomcgary kintoki zwang jasontsai aaltenburger sawasthi nurban josepe tjandra venancio maren qayub Garamonfok yyfwuhan Asclepius dbikard nzm jjray djkt treangen lp2 operon diamantis druvus DrRichardBadge richardfranzese ronbun_2009au Pedro Martinez EvoDevo lab Barcelona iSEEM Journal picks
	A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. [My Copy] Molecular Biology and Evolution, Vol. 18, No. 5. (1 May 2001), pp. 691-699. by S. Whelan, N. Goldman posted to mdb-thesis mdb-manuscript-1 evolutionary-rate amino-acid-substitution by michaelbarton on 2009-08-07 16:36:02 as along with 7 people calderonv BioNica bpb chrn ssgong gjuggler gisle
	Global discovery of adaptive mutations. [My Copy] Nature methods (13 July 2009) by Hani Goodarzi, Alison K. Hottes, Saeed Tavazoie posted to evolutionary-rate by michaelbarton on 2009-07-19 00:30:22 as
	Heterotachy, an important process of protein evolution. [My Copy] Molecular biology and evolution, Vol. 19, No. 1. (January 2002), pp. 1-7. by P. Lopez, D. Casane, H. Philippe posted to amino-acid-substitution evolutionary-rate by michaelbarton to the group BergmanLab on 2009-07-15 13:26:35 as along with 1 person ramiro2k
	Phylogenomics and the reconstruction of the tree of life [My Copy] Nature Reviews Genetics, Vol. 6, No. 5. (01 May 2005), pp. 361-375. by Frederic Delsuc, Henner Brinkmann, Herve Philippe posted to alignment-concatenation evolution evolutionary-rate phylogenomics phylogeny by michaelbarton on 2009-06-26 11:34:49 as along with 11 people calderonv pablocarb stharward adampah treangen fhsantanna druvus maximilianh cmzmasek gjuggler dmc
	Why highly expressed proteins evolve slowly. [My Copy] Proceedings of the National Academy of Sciences (21 September 2005), pp. 14338-14343. by D. A. A. Drummond, Jesse D. D. Bloom, Christoph Adami, Claus O. O. Wilke, Frances H. H. Arnold posted to evolutionary-rate gene-expression mdb-thesis prote-evolution by michaelbarton on 2009-06-15 11:45:50 as along with 17 people and 5 groups codonusage allmaya rklancer stevanspringer bjorns imouthesmp aprasad dayjm Einat marcius xwbcn penka balabu malcook balicea RamuAnandakrishnan wilbur structural_bioinformatics Nie FAB-lab BioinfoCIPF SGU-CIPF
	Highly Expressed Genes in Yeast Evolve Slowly [My Copy] Genetics, Vol. 158, No. 2. (1 June 2001), pp. 927-931. by Csaba Pal, Balazs Papp, Laurence D. Hurst posted to evolutionary-rate gene-expression mdb-thesis by michaelbarton on 2009-06-15 11:38:37 as along with 6 people and 1 group pablocarb bjorns penka lewbin balicea skumagai Nie
	Co-evolutionary networks of genes and cellular processes across fungal species [My Copy] Genome Biology, Vol. 10, No. 5. (2009), R48. by Tamir Tuller, Martin Kupiec, Eytan Ruppin posted to evolutionary-rate yeast by michaelbarton on 2009-05-05 14:30:06 as along with 5 people kiekyon roys inesdesantiago grahamc dokky
	Evolutionary rates and centrality in the yeast gene regulatory network [My Copy] Genome Biology, Vol. 10 (09 April 2009), R35. by Richard Jovelin, Patrick C. Phillips posted to evolutionary-rate transcription-factors yeast by michaelbarton on 2009-04-17 10:02:47 as along with 2 people djkt bpcusack
	The Tree versus the Forest: The Fungal Tree of Life and the Topological Diversity within the Yeast Phylome [My Copy] PLoS ONE, Vol. 4, No. 2. (3 February 2009), e4357. by Marina Marcet-Houben, Toni Gabaldón posted to alignment-concatenation evolutionary-rate phylogenomics phylogeny species-tree yeast by michaelbarton on 2009-03-08 12:38:19 as along with 2 people and 1 group kiekyon stajich Mycology
	PhylomeDB: a database for genome-wide collections of gene phylogenies [My Copy] Nucl. Acids Res., Vol. 36, No. Database issue. (25 October 2007), gkm899. by Jaime Huerta-Cepas, Anibal Bueno, Joaquin Dopazo, Toni Gabaldon posted to evolutionary-rate phylogenomics phylogeny yeast by michaelbarton on 2009-03-08 12:37:55 as along with 3 people aktas treangen gjuggler
	Environment specific substitution tables for thermophilic proteins. [My Copy] BMC Bioinformatics, Vol. 8 Suppl 1 (2007) by K. Mizuguchi, M. Sele, M. V. Cubellis posted to evolutionary-rate thermophile by michaelbarton on 2009-03-04 14:49:49 as along with 1 person sebk
	Protein and DNA Sequence Determinants of Thermophilic Adaptation [My Copy] PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e5. by Konstantin B. Zeldovich, Igor N. Berezovsky, Eugene I. Shakhnovich posted to environment evolutionary-rate thermophile by michaelbarton on 2009-03-04 14:44:35 as along with 3 people aalibes bpb gisle
	Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. [My Copy] Nature, Vol. 424, No. 6952. (28 August 2003), pp. 1042-1047. by G. Rocap, F. W. Larimer, J. Lamerdin, et al.S. Malfatti, P. Chain, N. A. Ahlgren, A. Arellano, M. Coleman, L. Hauser, W. R. Hess, Z. I. Johnson, M. Land, D. Lindell, A. F. Post, W. Regala, M. Shah, S. L. Shaw, C. Steglich, M. B. Sullivan, C. S. Ting, A. Tolonen, E. A. Webb, E. R. Zinser, S. W. Chisholm posted to environment evolutionary-rate by michaelbarton on 2009-03-04 14:42:44 as along with 3 people and 1 group hwright bluto beatrizfernandez Microbial-Ecology
	Accelerated evolution associated with genome reduction in a free-living prokaryote. [My Copy] Genome biology, Vol. 6, No. 2. (2005) by Alexis Dufresne, Laurence Garczarek, Frédéric Partensky posted to environment evolutionary-rate by michaelbarton on 2009-03-04 14:42:00 as along with 5 people and 2 groups johanviklund wasmith75 operon beatrizfernandez kinestetika Microbial-Ecology microbiology_nijmegen
	Deletional bias and the evolution of bacterial genomes. [My Copy] Trends Genet, Vol. 17, No. 10. (October 2001), pp. 589-596. by A. Mira, H. Ochman, N. A. Moran posted to evolutionary-rate insertion-deletion by michaelbarton on 2009-03-04 14:41:11 as along with 5 people and 2 groups codonusage operon AaronDarling beatrizfernandez kinestetika Microbial-Ecology microbiology_nijmegen
	Modeling residue usage in aligned protein sequences via maximum likelihood. [My Copy] Mol Biol Evol, Vol. 13, No. 10. (December 1996), pp. 1368-1374. by W. J. Bruno posted to amino-acid-substitution amino-acid-usage evolutionary-rate mdb-thesis by michaelbarton on 2009-03-02 22:56:59 as
	PAML 4: Phylogenetic analysis by maximum likelihood [My Copy] Molecular Biology and Evolution, Vol. 24, No. 8. (1 August 2007), pp. 1586-1591. by Ziheng Yang posted to mdb-thesis mdb-manuscript-1 evolutionary-rate by michaelbarton on 2009-03-02 22:52:02 as along with 13 people and 1 group ckenaley biomcgary dquest druvus operon akifumi hdopazo BioNica stajich ryanraaum RamuAnandakrishnan CharlesM Ema Mycology
	Why is the correlation between gene importance and gene evolutionary rate so weak? [My Copy] PLoS Genetics, Vol. 5, No. 1. (January 2009), e1000329. by Zhi Wang, Jianzhi Zhang posted to evolutionary-rate evolutionary-systems-biology gene-dispensability gene-knockout mdb-thesis systems-biology by michaelbarton on 2009-02-03 16:05:50 as along with 11 people and 2 groups daveGerrard rdiaz renatomilani dpollard pkonings katholt druvus Zephyrus djkt trfield cabbagesofdoom RockmanLab R.E.A.D
	Models of coding sequence evolution. [My Copy] Briefings in bioinformatics, Vol. 10, No. 1. (1 January 2009), pp. 97-109. by Wayne Delport, Konrad Scheffler, Cathal Seoighe posted to evolution evolutionary-rate prote-evolution by michaelbarton on 2009-01-30 17:23:09 as along with 11 people akiii operon BioNica katholt chica dakelley nuin medic0747 treangen druvus nklee
	An analysis of determinants of amino acids substitution rates in bacterial proteins. [My Copy] Molecular Biology and Evolution, Vol. 21, No. 1. (January 2004), pp. 108-116. by E. P. Rocha, A. Danchin posted to mdb-thesis mdb-manuscript-1 evolutionary-rate evolution ecoli cost-minimisation amino-acid-usage amino-acid-substitution by michaelbarton on 2009-01-29 17:15:51 as along with 5 people and 1 group bjorns tny penka jpoyatos skumagai Nie
	Do Amino Acid Biosynthetic Costs Constrain Protein Evolution in Saccharomyces cerevisiae ? [My Copy] Journal of Molecular Evolution by Douglas Raiford, Esley Heizer, Robert Miller, Hiroshi Akashi, Michael Raymer, Dan Krane posted to 2008-2-mdb amino-acid-usage evolutionary-rate yeast by michaelbarton to the group BergmanLab on 2009-01-16 16:49:35 as
	A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny. [My Copy] BMC Evolutionary Biology, Vol. 8 (16 December 2008), 331. by Huai-Chun, Andrew J. Roger posted to 2008-2-mdb amino-acid-usage evolutionary-rate by michaelbarton to the group BergmanLab on 2009-01-16 14:46:53 as along with 2 people hdopazo tny
	Protein material costs: single atoms can make an evolutionary difference [My Copy] Trends in Genetics, Vol. 25, No. 1. (January 2009), pp. 5-8. by J. Bragg, A. Wagner posted to amino-acid-substitution amino-acid-usage cost-benefit-analysis cost-minimisation evolutionary-rate fitness gene-expression insertion-deletion nutrient-limitation proteins by michaelbarton to the group BergmanLab on 2009-01-14 14:26:12 as
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to amino-acid-substitution evolution evolutionary-rate insertions-deletions multiple-sequence-alignment reviewed sequence-homology by michaelbarton on 2008-07-24 17:07:58 as along with 29 people and 3 groups memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler djkt ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	A genome-wide survey of changes in protein evolutionary rates across four closely related species of Saccharomyces sensu stricto group [My Copy] BMC Evolutionary Biology, Vol. 7 (29 January 2007), 9. by Yoshihiro Kawahara, Tadashi Imanishi posted to yeast synonymous-substitutions reviewed non-synonymous-substitutions multiple-sequence-alignment genomics gene-expression gene-duplication functional-constaint evolutionary-rate evolution amino-acid-substitution by michaelbarton on 2008-04-29 11:55:34 as
	Adjusting for selection on synonymous sites in estimates of evolutionary distance. [My Copy] Mol Biol Evol, Vol. 22, No. 1. (January 2005), pp. 174-177. by A. E. Hirsh, H. B. Fraser, D. P. Wall posted to evolutionary-rate by michaelbarton on 2008-04-28 18:47:12 as along with 2 people Ema friendpine
	Systems biology of SNPs [My Copy] Mol Syst Biol, Vol. 2 (4 July 2006), pp. E1-E4. by Neema Jamshidi, Bernhard O. Palsson posted to 2008-3-mdb evolutionary-rate snp by michaelbarton to the group BergmanLab on 2008-04-22 18:13:07 as along with 7 people and 4 groups Sonix dchughes raiyar massivemayhem cat_worth dbgrant jo_davies structural_bioinformatics G4ID steinmetzlab Genetics-of-Gambling
	Functional genomic analysis of the rates of protein evolution. [My Copy] Proceedings of the National Academy of Sciences, Vol. 102, No. 15. (12 April 2005), pp. 5483-5488. by D. P. Wall, A. E. Hirsh, H. B. Fraser, et al.J. Kumm, G. Giaever, M. B. Eisen, M. W. Feldman posted to yeast synonymous-substitutions reviewed non-synonymous-substitutions noise mdb-thesis mdb-manuscript-1 gene-knockout gene-expression gene-dispensability evolutionary-rate evolution amino-acid-substitution by michaelbarton on 2008-04-22 12:32:12 as along with 7 people and 1 group mgomes phoenixzxl bjorns balajis opheliav penka RamuAnandakrishnan Nie

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amino-acid-substitution	10
mdb-thesis	9
amino-acid-usage	8
yeast	8
gene-expression	7
evolution	6
mdb-manuscript-1	5
cost-minimisation	3
ecoli	3
environment	3
insertion-deletion	3
phylogenomics	3
phylogeny	3
reviewed	3
2008-2-mdb	2
alignment-concatenation	2
cost-benefit-analysis	2
fitness	2
gene-dispensability	2
gene-knockout	2
multiple-sequence-alignment	2
non-synonymous-substitutions	2
nutrient-limitation	2
prote-evolution	2
proteins	2
snp	2
srs-resequencing	2
synonymous-substitutions	2
thermophile	2
2008-3-mdb	1
amino-acid-cost	1
evolutionary-systems-biology	1
functional-constaint	1
gene-duplication	1
genomics	1
insertions-deletions	1
noise	1
sequence-homology	1
species-tree	1
systems-biology	1
transcription	1
transcription-factors	1
translation	1

Tag evolutionary-rate [29 articles] Export

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