Tag evolutionary_constraint [26 articles] Export Sort

Recent papers classified by the tag evolutionary_constraint.

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	Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif. [My Copy] Genome research, Vol. 18, No. 12. (25 December 2008), pp. 1896-1905. by Yong Cheng, David C. King, Louis C. Dore, et al.Xinmin Zhang, Yuepin Zhou, Ying Zhang, Christine Dorman, Demesew Abebe, Swathi A. Kumar, Francesca Chiaromonte, Webb Miller, Roland D. Green, Mitchell J. Weiss, Ross C. Hardison posted to motif evolutionary_constraint by idonaldson on 2009-12-11 09:44:14 as along with 2 people emptyhb maximilianh
	Spider Web Glue: Two Proteins Expressed from Opposite Strands of the Same DNA Sequence [My Copy] Biomacromolecules, Vol. 10, No. 10. (12 October 2009), pp. 2852-2856. by Omer Choresh, Battuya Bayarmagnai, Randolph V. Lewis posted to ultraconserved_sequence spider protein orf evolutionary_constraint evolution bi-directional_orf by biomcgary on 2009-11-10 15:44:47 as
	Evolution of biomolecular networks \|[mdash]\| lessons from metabolic and protein interactions [My Copy] Nature Reviews Molecular Cell Biology, Vol. 10, No. 11. (01 November 2009), pp. 791-803. by Takuji Yamada, Peer Bork posted to review protein-protein_interaction network_evolution evolutionary_constraint evolution by biomcgary on 2009-10-28 18:52:23 as along with 8 people and 1 group PabloMarin vvoorr venancio colmryan pinney nzm pedrobeltrao tmmurali Journal picks
	From molecular to modular cell biology. [My Copy] Nature, Vol. 402, No. 6761 Suppl. (2 December 1999), pp. C47-C52. by L. H. Hartwell, J. J. Hopfield, S. Leibler, A. W. Murray posted to review module_rewiring module modularity evolutionary_constraint evolution by biomcgary on 2009-09-30 21:57:46 as along with 27 people and 8 groups antonkratz dagmar poirel bertelsen Scis0000002 daforerog jporternj chihchun_chen babakap AurelienMazurie rhem1224 balajis nuke2005 rubendrr wnpx i41m adepace javierFellow mmt mirzazadeh carmaus dejori carlk awooga tvdbulck vsausg dragonrez EisenLab TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells dIEMoSIRIS ic4 generif_paper MoSi-Rostock
	Protein sectors: evolutionary units of three-dimensional structure. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 774-786. by Najeeb Halabi, Olivier Rivoire, Stanislas Leibler, Rama Ranganathan posted to selection protein_structure evolutionary_constraint correlated_evolution by biomcgary on 2009-09-10 21:52:53 as along with 10 people and 1 group yyfwuhan cmzmasek dgront robfsouza pansapiens pablocarb vvoorr dayjm jwm jbhiatt Marcotte_Lab
	Fundamental Evolutionary Limits in Ecological Traits Drive Drosophila Species Distributions [My Copy] Science In Science, Vol. 325, No. 5945. (4 September 2009), pp. 1244-1246. by Vanessa Kellermann, Belinda van Heerwaarden, Carla M. Sgro, Ary A. Hoffmann posted to variation speciation specialists_vs_generalists phenotype genetic_variation evolutionary_constraint drosophila biogeography adaptation by biomcgary on 2009-09-04 21:12:07 as along with 3 people tkeitt jjray dinnes
	Changes in alternative splicing of human and mouse genes are accompanied by faster evolution of constitutive exons. [My Copy] Molecular biology and evolution, Vol. 22, No. 11. (1 November 2005), pp. 2198-2208. by Brian P. Cusack, Kenneth H. Wolfe posted to splicing_alternative splicing mutation_rate evolutionary_constraint evolution_rate biased_mutation by biomcgary on 2009-09-02 22:48:33 as along with 1 person and 1 group avilella Ensembl Compara citations
	On the Accessibility of Adaptive Phenotypes of a Bacterial Metabolic Network [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (21 August 2009), e1000472. by Wilfred Ndifon, Joshua B. Plotkin, Jonathan Dushoff posted to neutral_network mutation metabolism information_theory information genotype-phenotype_map evolutionary_constraint evolution adaptive_landscape adaptation by biomcgary on 2009-08-24 23:45:58 as along with 2 people and 1 group zwang djkt iSEEM
	Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. [My Copy] Nature, Vol. 356, No. 6369. (9 April 1992), pp. 519-520. by D. J. Begun, C. F. Aquadro posted to variation recombination mutation_rate hitch-hiking evolutionary_constraint drosophila biased_recombination biased_mutation by biomcgary on 2009-08-20 22:19:35 as along with 1 person emptyhb
	Revisiting the Saccharomyces cerevisiae predicted ORFeome. [My Copy] Genome research, Vol. 18, No. 8. (23 August 2008), pp. 1294-1303. by Qian-Ru R. Li, Anne-Ruxandra R. Carvunis, Haiyuan Yu, et al.Jing-Dong D. Han, Quan Zhong, Nicolas Simonis, Stanley Tam, Tong Hao, Niels J. Klitgord, Denis Dupuy, Danny Mou, Ilan Wapinski, Aviv Regev, David E. Hill, Michael E. Cusick, Marc Vidal posted to annotation evolutionary_constraint functional_annotation orphan_gene protein proteome yeast by biomcgary on 2009-08-05 00:22:22 as along with 6 people and 1 group kiekyon dbensasson stajich nklee biehl guhjy Mycology
	Evolution in protein interaction networks: co-evolution, rewiring and the role of duplication. [My Copy] Biochemical Society transactions, Vol. 37, No. Pt 4. (August 2009), pp. 768-771. by David L. Robertson, Simon C. Lovell posted to co-evolution evolution evolutionary_constraint evolvability gene_duplication network network_evolution predictive_biology protein-protein_interaction by biomcgary on 2009-07-28 17:29:25 as along with 1 person chica
	A novel method for detecting intramolecular coevolution: adding a further dimension to selective constraints analyses. [My Copy] Genetics, Vol. 173, No. 1. (1 May 2006), pp. 9-23. by M. A. Fares, S. A. Travers posted to co-adaptation co-evolution evolutionary_constraint protein protein_structure by biomcgary on 2009-07-24 19:24:25 as along with 9 people and 3 groups chica qluo marti stevanspringer operon caporaso breden cjeans tale FAB-lab biomedical-nlp SFUAntibodyResearch
	Why should we care about molecular coevolution? [My Copy] Evolutionary bioinformatics online, Vol. 4 (2008), pp. 29-38. by F. M. Codoñer, M. A. Fares posted to co-evolution evolutionary_constraint phylogenetics protein-protein_interaction by biomcgary on 2009-07-21 22:52:05 as
	Comparable contributions of structural-functional constraints and expression level to the rate of protein sequence evolution [My Copy] Biology Direct, Vol. 3, No. 1. (07 October 2008), 40. by Maxim Wolf, Yuri Wolf, Eugene Koonin posted to evolution_rate evolutionary_constraint gene_expression protein protein_folding protein_structure by biomcgary on 2009-07-21 22:36:52 as along with 1 person gjuggler
	Widespread Positive Selection in Synonymous Sites of Mammalian Genes [My Copy] Mol Biol Evol, Vol. 24, No. 8. (1 August 2007), pp. 1821-1831. by Alissa M. Resch, Liran Carmel, Leonardo Marino-Ramirez, et al.Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Igor B. Rogozin, Eugene V. Koonin posted to evolution_rate evolutionary_constraint gene_expression intron mrna mrna_decay non-synonymous_site selection selection_positive synonymous_site by biomcgary on 2009-07-21 22:17:39 as along with 3 people ilyashl operon bpcusack
	Co-evolution and co-adaptation in protein networks. [My Copy] FEBS letters, Vol. 582, No. 8. (9 April 2008), pp. 1225-1230. by D. Juan, F. Pazos, A. Valencia posted to co-adaptation co-evolution compensatory_mutations evolution evolutionary_constraint network phylogenetics protein-protein_interaction by biomcgary on 2009-07-13 21:51:13 as along with 3 people and 1 group zwang phoenixzxl smgomez GomezLab
	Genomic Clues to DNA Treasure Sometimes Lead Nowhere [My Copy] Science, Vol. 325, No. 5937. (10 July 2009), pp. 142-143. by Don Monroe posted to evolution_rate evolutionary_constraint evolutionary_stasis faulty_assumptions ncrna nonconserved_functional_dna usefulness_of_evolutionary_theory by biomcgary on 2009-07-10 21:00:14 as along with 3 people rdiaz pkonings dinnes
	In silico evidence for functional specialization after genome duplication in yeast. [My Copy] FEMS yeast research, Vol. 9, No. 1. (February 2009), pp. 16-31. by O. Turunen, R. Seelke, J. Macosko posted to dnds evolution_rate evolutionary_constraint fungi gene_duplication gene_redundant genome_duplication neo-functionalization subfunctionalization by biomcgary on 2009-05-19 16:00:08 as
	The emerging conceptual framework of evolutionary developmental biology [My Copy] Nature In Nature, Vol. 415, No. 6873. (14 February 2002), pp. 757-764. by Wallace Arthur posted to co-option development developmental_bias developmental_reprogramming evo-devo evolution evolutionary_constraint evolutionary_stasis exaptation internal_selection review selection by biomcgary on 2009-04-20 22:22:34 as along with 5 people icq242500260 dayjm bayesian balicea shivakumar3_14
	Exceptional convergent evolution in a virus. [My Copy] Genetics, Vol. 147, No. 4. (December 1997), pp. 1497-1507. by J. J. Bull, M. R. Badgett, H. A. Wichman, et al.J. P. Huelsenbeck, D. M. Hillis, A. Gulati, C. Ho, I. J. Molineux posted to biased_mutation convergent_evolution evolutionary_constraint parallel_evolution phylogenetics phylogenomics by biomcgary on 2009-04-15 17:26:00 as
	Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000232. by Wan K. Kim, Edward M. Marcotte posted to evolution evolution_rate evolutionary_constraint gene_duplication by biomcgary on 2009-02-03 18:49:52 as along with 7 people wangbo dakelley cabbagesofdoom chad_davis grahamc bpcusack tmmurali
	Robustness can evolve gradually in complex regulatory gene networks with varying topology. [My Copy] PLoS computational biology, Vol. 3, No. 2. (2 February 2007), e15. by S. Ciliberti, O. C. Martin, A. Wagner posted to evolution evolutionary_constraint gene_expression genetic_load robustness systems_biology by biomcgary on 2008-11-20 15:23:36 as along with 17 people and 4 groups chica kaarsinogen eldan ccots indigoviolet emilyhare entropy nickluscombe aswin kengg dolhuis timflutre grahamc shigepong kynn carneiro phoenixzxl EisenLab EBI-regulation SNE Plantandetc
	Preferential duplication of conserved proteins in eukaryotic genomes. [My Copy] PLoS biology, Vol. 2, No. 3. (March 2004) by J. C. Davis, D. A. Petrov posted to aggregation codon_bias evolution_rate evolutionary_constraint gene_duplication gene_function genome_duplication sequence_divergence by biomcgary on 2008-11-12 22:51:03 as
	The Ascent of the Abundant: How Mutational Networks Constrain Evolution [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (18 July 2008), e1000110. by Matthew C. Cowperthwaite, Evan P. Economo, William R. Harcombe, Eric L. Miller, Lauren A. Meyers posted to adaptation biased_mutation evolutionary_constraint mutation natural_selection neutral_mutation neutral_network rna by biomcgary on 2008-07-28 20:07:25 as along with 6 people yyfwuhan Ema djkt friendpine zwang shoshin
	Pleiotropic scaling of gene effects and the \|[lsquo]\|cost of complexity\|[rsquo]\| [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 470-472. by Gunter P. Wagner, Jane P. Kenney-Hunt, Mihaela Pavlicev, Joel R. Peck, David Waxman, James M. Cheverud posted to cost_of_complexity evolution evolutionary_constraint gene_expression mutation pleiotropy qtl skeleton by biomcgary on 2008-03-27 15:16:43 as along with 5 people tomhebbron Garamonfok bpcusack lusk natstreet
	Selection to minimise noise in living systems and its implications for the evolution of gene expression [My Copy] Mol Syst Biol, Vol. 4 (4 March 2008) by Ben Lehner posted to evolution evolutionary_constraint gene_expression noise selection stochastic_variation systems_biology variation by biomcgary on 2008-03-04 20:24:43 as along with 9 people jjray grahamc zwang bootsy wilbur caseybrown michaelbarton austin bpcusack

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evolution	11
evolution_rate	7
gene_expression	5
biased_mutation	4
co-evolution	4
gene_duplication	4
protein	4
protein-protein_interaction	4
selection	4
adaptation	3
mutation	3
phylogenetics	3
protein_structure	3
review	3
variation	3
co-adaptation	2
drosophila	2
evolutionary_stasis	2
genome_duplication	2
mutation_rate	2
network	2
network_evolution	2
neutral_network	2
systems_biology	2
adaptive_landscape	1
aggregation	1
annotation	1
bi-directional_orf	1
biased_recombination	1
biogeography	1
co-option	1
codon_bias	1
compensatory_mutations	1
convergent_evolution	1
correlated_evolution	1
cost_of_complexity	1
development	1
developmental_bias	1
developmental_reprogramming	1
dnds	1
evo-devo	1
evolvability	1
exaptation	1
faulty_assumptions	1
functional_annotation	1
fungi	1
gene_function	1
gene_redundant	1
genetic_load	1
genetic_variation	1
genotype-phenotype_map	1
hitch-hiking	1
information	1
information_theory	1
internal_selection	1
intron	1
metabolism	1
modularity	1
module	1
module_rewiring	1
motif	1
mrna	1
mrna_decay	1
natural_selection	1
ncrna	1
neo-functionalization	1
neutral_mutation	1
noise	1
non-synonymous_site	1
nonconserved_functional_dna	1
orf	1
orphan_gene	1
parallel_evolution	1
phenotype	1
phylogenomics	1
pleiotropy	1
predictive_biology	1
protein_folding	1
proteome	1
qtl	1
recombination	1
rna	1
robustness	1
selection_positive	1
sequence_divergence	1
skeleton	1
specialists_vs_generalists	1
speciation	1
spider	1
splicing	1
splicing_alternative	1
stochastic_variation	1
subfunctionalization	1
synonymous_site	1
ultraconserved_sequence	1
usefulness_of_evolutionary_theory	1
yeast	1

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