Tag exon [75 articles] Export

Recent papers classified by the tag exon.

	Genome evolution and the evolution of exon-shuffling — a review [My Copy] Gene, Vol. 238, No. 1. (30 September 1999), pp. 103-114. by L. Patthy posted to shuffling exon by gregoryross on 2009-11-03 12:53:46 as
	Biased codon usage near intron-exon junctions: selection on splicing enhancers, splice-site recognition or something else? [My Copy] Trends in Genetics, Vol. 21, No. 5. (May 2005), pp. 256-259. by Jean-Vincent Chamary, Laurence D. Hurst posted to usage synonymous exon codon boundaries by saunders on 2009-10-30 12:12:47 as along with 2 people setar bpcusack
	Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals. [My Copy] Molecular biology and evolution, Vol. 24, No. 8. (1 August 2007), pp. 1600-1603. by Joanna L. Parmley, Laurence D. Hurst posted to usage exon codon boundaries by saunders on 2009-10-30 12:04:00 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 8. (13 April 1999), pp. 4482-4487. by Laurent Duret, Dominique Mouchiroud posted to usage exon codon boundaries by saunders on 2009-10-30 11:59:55 as along with 4 people and 1 group robfsouza thegoose2 tharris bjorns C. elegans / WormBase
	Patterns of exon-intron architecture variation of genes in eukaryotic genomes. [My Copy] BMC genomics, Vol. 10 (24 January 2009), 47. by Liucun Zhu, Ying Zhang, Wen Zhang, Sihai Yang, Jian-Qun Q. Chen, Dacheng Tian posted to splicing intron gc exon by sebastien_vigneau on 2009-10-29 21:43:37 as along with 2 people bmajoros druvus
	Nucleosome positioning as a determinant of exon recognition [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 9. (16 August 2009), pp. 996-1001. by Hagen Tilgner, Christoforos Nikolaou, Sonja Althammer, et al.Michael Sammeth, Miguel Beato, Juan Valcarcel, Roderic Guigo posted to splicing nucleosome-positioning nucleosome intron exon by sebastien_vigneau on 2009-10-29 21:43:00 as along with 3 people fenghezi RamuAnandakrishnan aalibes
	Chromatin organization marks exon-intron structure. [My Copy] Nature structural & molecular biology, Vol. 16, No. 9. (16 September 2009), pp. 990-995. by Schraga Schwartz, Eran Meshorer, Gil Ast posted to polii nucleosome-positioning nucleosome intron h3k36me3 gc exon by sebastien_vigneau on 2009-10-29 21:42:10 as along with 4 people inesdesantiago fenghezi ericrpaquet ashkelon13
	Exon Array Analyzer: a web interface for Affymetrix exon array analysis [My Copy] Bioinformatics (12 October 2009), btp577. by Pascal Gellert, Shizuka Uchida, Thomas Braun posted to webserver microarray exon analysis affymetrix by neils on 2009-10-25 01:33:18 as
	Affy exon tissues: exon levels in normal tissues in human, mouse and rat [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2442-2443. by Andrew A. Pohl, Charles W. Sugnet, Tyson A. Clark, Kayla Smith, Pauline A. Fujita, Melissa S. Cline posted to tissues rat normal mouse levels human exon comparative array affymetrix by dswan on 2009-09-01 09:41:17 as along with 1 person guhjy
	Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 36. (5 September 2006), pp. 13427-13432. by Xiang H. F. Zhang, Lawrence A. Chasin posted to intron human genomics exon evolution by operon on 2009-08-31 12:53:42 as along with 5 people and 3 groups eoghanharr aprasad dayjm dchughes paulcartwright G4ID Genetics-of-Gambling BergmanLab
	Massively parallel exon capture and library-free resequencing across 16 genomes [My Copy] Nat Meth, Vol. 6, No. 5. (6 May 2009), pp. 315-316. by Emily H. Turner, Choli Lee, Sarah B. Ng, Deborah A. Nickerson, Jay Shendure posted to sequencing resequencing exon by torfinnnome on 2009-08-15 13:08:23 as along with 6 people and 1 group xingxu jandot fenghezi guhjy jdbowes sleepingcell Journal picks
	Genome-wide analysis of antisense transcription with Affymetrix exon array [My Copy] BMC Genomics, Vol. 9, No. 1. (22 January 2008), 27. by Xijin Ge, Wendy Rubinstein, Yong C. Jung, Qingfa Wu posted to affymetrix analysis antisense array exon genome transcription wide by dswan to the group Bioinformatics on 2009-08-11 11:11:26 as
	Role of KCNMA1 gene in breast cancer invasion and metastasis to brain [My Copy] BMC Cancer, Vol. 9, No. 1. (29 July 2009), 258. by Divya Khaitan, Umesh Sankpal, Babette Weksler, et al.Edward Meister, Ignacio Romero, Pierre O. Couraud, Nagendra Ningaraj posted to exon metastasis by lwaldron on 2009-08-06 21:41:21 as
	Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies [My Copy] Genome Biology, Vol. 10, No. 7. (2009), R77. by Essi Laajala, Tero Aittokallio, Riitta Lahesmaa, Laura Elo posted to exon gpl microarray r tools by lwaldron on 2009-08-05 18:34:31 as along with 3 people ericrpaquet djkt neils
	ExDom: an integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotes. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (January 2009) by A. Bhasi, P. Philip, V. Manikandan, P. Senapathy posted to db exon intron by guhjy on 2009-07-27 03:39:50 as
	easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data. [My Copy] BMC bioinformatics, Vol. 9 (14 October 2008), 432. by T. Y. Chang, Y. Y. Li, C. H. Jen, et al.T. P. Yang, C. H. Lin, M. T. Hsu, H. W. Wang posted to affy exon ma by guhjy on 2009-07-18 10:18:33 as along with 2 people jfr dswan
	Splicing and the Evolution of Proteins in Mammals [My Copy] PLoS Biol, Vol. 5, No. 2. (6 February 2007), e14. by Joanna L. Parmley, Araxi O. Urrutia, Lukasz Potrzebowski, Henrik Kaessmann, Laurence D. Hurst posted to evolution exon review by mtruksa on 2009-07-14 18:09:46 as along with 8 people and 7 groups operon aalibes dpollard dchughes kehan stajich jwestbrook gileswl biodiversity_conservation Bioinformatics EisenLab G4ID King_Lab GrassBase Genetics-of-Gambling
	Using high-density exon arrays to profile gene expression in closely related species [My Copy] Nucl. Acids Res., Vol. 37, No. 12. (1 July 2009), e90. by Lan Lin, Song Liu, Heather Brockway, et al.Junhee Seok, Peng Jiang, Wing H. Wong, Yi Xing posted to comparison evolution exon expression microarray species by neils on 2009-07-14 00:26:10 as along with 1 person guhjy
	Exon-specific RNA interference: a tool to determine the functional relevance of proteins encoded by alternatively spliced mRNAs. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 309 (2005), pp. 273-282. by A. M. Celotto, J. W. Lee, B. R. Graveley posted to as exon rnai by guhjy on 2009-06-27 02:04:12 as
	Gene Expression and Isoform Variation Analysis using Affymetrix Exon Arrays [My Copy] BMC Genomics, Vol. 9 (07 November 2008), 529. by Amandine Bemmo, David Benovoy, Tony Kwan, Daniel J. Gaffney, Roderick V. Jensen, Jacek Majewski posted to affymetrix analysis array exon gene-expression genechip isoform splicing variation by bertelsen on 2009-06-22 17:17:29 as along with 6 people jfr guhjy ivanek pengchy dswan caseybrown
	Intergenic and Genic Sequence Lengths Have Opposite Relationships with Respect to Gene Expression [My Copy] PLoS ONE, Vol. 3, No. 11. (7 November 2008), e3670. by Juliette Colinas, Scott C. Schmidler, Gil Bohrer, Borislav Iordanov, Philip N. Benfey posted to exon expression length level protein sequence transcription by robfsouza on 2009-06-18 17:00:16 as along with 3 people and 2 groups druvus cisevol bpcusack cis-regulatory-evolution BergmanLab
	Patterns of internal gene duplication in the course of metazoan evolution [My Copy] Gene, Vol. 396, No. 1. (01 July 2007), pp. 59-65. by Chun-Chang Chen, Wen-Hsiung Li, Huang-Mo Sung posted to indel complexity domain duplication elongation evolution exon gene length low ontology protein repeats sequence shuffling by robfsouza on 2009-06-17 20:34:43 as
	Overestimation of alternative splicing caused by variable probe characteristics in exon arrays [My Copy] Nucl. Acids Res. (15 June 2009), gkp508. by Dimos Gaidatzis, Kirsten Jacobeit, Edward J. Oakeley, Michael B. Stadler posted to exon microarray probe splicing statistics variation by neils on 2009-06-17 00:15:36 as
	Differential splicing using whole-transcript microarrays. [My Copy] BMC bioinformatics, Vol. 10 (22 May 2009), 156. by M. D. Robinson, T. P. Speed posted to affymetrix algorithm differential exon gene microarray rma splicing transcript whole by dswan to the group Bioinformatics on 2009-06-09 11:29:40 as along with 5 people guhjy lwaldron chrisamiller humburg neils
	Comprehensive analysis of affymetrix exon arrays using BioConductor. [My Copy] PLoS computational biology, Vol. 4, No. 2. (February 2008) by M. J. Okoniewski, C. J. Miller posted to affymetrix bioconductor bioinformatics cdf exon microarray by daveGerrard on 2009-05-08 10:34:19 as along with 7 people floatingpoint guhjy neils giovenko jfr chrisamiller eskay
	Correction: Gene expression and isoform variation analysis using Affymetrix exon arrays [My Copy] BMC Genomics, Vol. 10 (23 March 2009), 121. by Amandine, Jacek Majewski posted to affymetrix analysis array exon expression gene isoform variation by dswan on 2009-04-15 11:06:26 as
	Probe selection and expression index computation of affymetrix exon arrays. [My Copy] PLoS ONE, Vol. 1 (2006) by Y. Xing, K. Kapur, W. H. Wong posted to affymetrix analysis design exon microarray probe selection by neils on 2009-04-15 04:37:25 as along with 2 people jfr waszak
	Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs. [My Copy] Nature, Vol. 457, No. 7232. (19 February 2009), pp. 1028-1032. by Affymetrix ENCODE Transcriptome Project, Cold Spring Harbor Laboratory ENCODE Transcriptome Project posted to cage exon rna small by jochenG on 2009-03-30 18:17:38 as along with 11 people guhjy gdb jfr daforerog fenghezi rdowell mtagaya djkt jbhiatt megraw mhamada
	Processing the H3K36me3 signature [My Copy] Nat Genet, Vol. 41, No. 3. (01 March 2009), pp. 270-271. by Robert J. Sims III, Danny Reinberg posted to chromatin exon h3k36 intron by clearbluespring on 2009-03-05 18:23:31 as along with 6 people tonamswish YukaH bpcusack fenghezi Dulcinea provero
	Cross-Hybridization Modeling on Affymetrix Exon Arrays. [My Copy] Bioinformatics (Oxford, England) (4 November 2008) by Karen Kapur, Hui Jiang, Yi Xing, Wing Hung H. Wong posted to affymetrix array exon modelling by dswan on 2008-12-05 11:23:45 as along with 3 people jfr GeeSharpMinor rschulz
	Improved identification of conserved cassette exons using Bayesian networks [My Copy] BMC Bioinformatics, Vol. 9 (12 November 2008), 477. by Rileen Sinha, Michael Hiller, Rainer Pudimat, Ulrike Gausmann, Matthias Platzer, Rolf Backofen posted to alternative exon splicing by imina on 2008-11-24 19:31:22 as
	Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons. [My Copy] Mol Cell, Vol. 14, No. 2. (23 April 2004), pp. 221-231. by R. Sorek, G. Lev-Maor, M. Reznik, et al.T. Dagan, F. Belinky, D. Graur, G. Ast posted to alu evolution exon human splicing by fridab on 2008-11-11 11:39:25 as along with 1 person N0131826
	Regions of extreme synonymous codon selection in mammalian genes [My Copy] Nucleic Acids Research, Vol. 34, No. 6. (2006), pp. 1700-1710. by Peter Schattner, Mark Diekhans posted to codon conservation exon motif synonymous by cajunsushi on 2008-11-06 19:33:38 as
	Structural basis for exon recognition by a group II intron. [My Copy] Nature structural & molecular biology (26 October 2008) by Navtej Toor, Kanagalaghatta Rajashankar, Kevin S S. Keating, Anna Marie M. Pyle posted to exon gene intron structure by operon on 2008-11-04 16:25:25 as
	Functional importance of different patterns of correlation between adjacent cassette exons in human and mouse [My Copy] BMC Genomics, Vol. 9 (26 April 2008), 191. by Tao Peng, Chenghai Xue, Jianning Bi, et al.Tingting Li, Xiaowo Wang, Xuegong Zhang, Yanda Li posted to project_coexcoev printed mammals expression exon evolution colocalisation by Garamonfok on 2008-10-27 15:30:33 as
	Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments [My Copy] Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4417-4423. by David Benovoy, Tony Kwan, Jacek Majewski posted to affymetrix csh exon microarray snp by waszak on 2008-10-07 22:40:50 as along with 3 people jfr GeeSharpMinor caseybrown
	Intronic Alus Influence Alternative Splicing [My Copy] PLoS Genet, Vol. 4, No. 9. (2008), e1000204. by Galit L. Maor, Oren Ram, Eddo Kim, et al.Noa Sela, Amir Goren, Erez Y. Levanon, Gil Ast posted to alu exon repeats splicing by aprasad on 2008-09-26 22:52:33 as along with 3 people and 1 group operon noasela djkt Computational-Genomics
	The effect of intron length on exon creation ratios during the evolution of mammalian genomes [My Copy] RNA, Vol. 14, No. 11. (16 November 2008), pp. 2261-2273. by Meenakshi Roy, Namshin Kim, Yi Xing, Christopher Lee posted to evolution exon intron splicing by sebastien_vigneau on 2008-09-22 15:09:15 as along with 3 people gregoryross inesdesantiago samgj
	Automatic detection of exonic splicing enhancers (ESEs) using SVMs [My Copy] BMC Bioinformatics, Vol. 9 (10 September 2008), 369. by Britta Mersch, Alexander Gepperth, Sandor Suhai, Agnes Hotz-Wagenblatt posted to alternative exon splice splicing by trevinor on 2008-09-11 23:00:21 as along with 1 person mtagaya
	Scipio: using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species. [My Copy] BMC bioinformatics, Vol. 9 (13 June 2008), 278. by O. Keller, F. Odronitz, M. Stanke, M. Kollmar, S. Waack posted to alignmnet exon genomics intron ortholog protein sequence by guhjy on 2008-09-10 05:29:11 as along with 5 people thegoose2 natstreet druvus GustavoLacerda tharris
	Regulation of CD45 Alternative Splicing by Heterogeneous Ribonucleoprotein, hnRNPLL [My Copy] Science, Vol. 321, No. 5889. (1 August 2008), pp. 686-691. by Shalini Oberdoerffer, Luis F. Moita, Daniel Neems, Rui P. Freitas, Nir Hacohen, Anjana Rao posted to affy array exon factor hnrnp knockdown splicing by cajunsushi on 2008-08-08 20:25:41 as along with 2 people arthurkoestler austin
	Exon-based mapping of microarray probes: recovering differential gene expression signal in underpowered hypoxia experiment. [My Copy] Molecular and cellular probes, Vol. 21, No. 2. (April 2007), pp. 134-139. by D. N. Grigoryev, S. F. Ma, L. A. Shimoda, R. A. Johns, B. Lee, J. G. Garcia posted to analysis exon expression microarray probe utr by bertelsen on 2008-08-08 19:42:28 as along with 1 person jfr
	Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. [My Copy] Nature, Vol. 453, No. 7199. (26 June 2008), pp. 1239-1243. by B. T. Wilhelm, S. Marguerat, S. Watt, et al.F. Schubert, V. Wood, I. Goodhead, C. J. Penkett, J. Rogers, J. Bähler posted to array cell dna exon gene genome intron pombe rna schizosaccharomyces sequence transcription transcriptome yeast by jonathanjacobs to the group Molecular Biology on 2008-06-26 12:17:45 as along with 12 people jmcq natstreet n00c TRHvidsten poschm michaelbarton caseybrown myourshaw djkt GeeSharpMinor guhjy semrich
	Study of Correlations in Segmented DNA Sequences: Application to Structure Coupling between Exons and Introns [My Copy] Journal of Theoretical Biology, Vol. 190, No. 1. (7 January 1998), pp. 69-83. by V. R. Chechetkin, V. V. Lobzin posted to correlation dna exon intron by mattjb to the group ComplexAdaptiveSystems on 2008-04-21 05:41:53 as
	RNA-editing-mediated exon evolution. [My Copy] Genome biology, Vol. 8, No. 2. (27 February 2007), R29. by Galit Lev-Maor, Rotem Sorek, Erez Y. Levanon, Nurit Paz, Eli Eisenberg, Gil Ast posted to editing evolution exon rna by paulcartwright to the group BergmanLab on 2008-03-26 12:18:48 as along with 1 person N0131826
	Investigation of Loss and Gain of Introns in the Compact Genomes of Pufferfishes (fugu and Tetraodon). [My Copy] Mol Biol Evol (17 December 2007) by Yong-Hwee H. Loh, Sydney Brenner, Byrappa Venkatesh posted to exon fish fugu genome-evolution intron intron-loss by dchughes on 2008-02-20 11:40:48 as along with 1 person brant
	A comparison of Affymetrix gene expression arrays [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Mark Robinson, Terence Speed posted to affymetrix exon huex hugene by waszak on 2008-01-30 14:06:16 as along with 3 people sebastien_vigneau jfr hpaces
	Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array [My Copy] BMC Genomics, Vol. 7 (27 December 2006), 325. by Paul J. Gardina, Tyson A. Clark, Brian Shimada, et al.Michelle K. Staples, Qing Yang, James Veitch, Anthony Schweitzer, Tarif Awad, Charles Sugnet, Suzanne Dee, Christopher Davies, Alan Williams, Yaron Turpaz posted to affymetrix cancer colon exon splicing by waszak on 2008-01-30 14:04:56 as along with 2 people jfr srp33
	The "Alternative" Choice of Constitutive Exons throughout Evolution. [My Copy] PLoS Genet, Vol. 3, No. 11. (16 November 2007) by Galit Lev-Maor, Amir Goren, Noa Sela, et al.Eddo Kim, Hadas Keren, Adi Doron-Faigenboim, Shelly Leibman-Barak, Tal Pupko, Gil Ast posted to evolution exon rna splicing by sebastien_vigneau on 2007-11-22 11:17:48 as along with 4 people and 2 groups GustavoLacerda noasela stajich bpcusack Computational-Genomics Mycology
	Pre-mRNA Secondary Structures Influence Exon Recognition. [My Copy] PLoS Genet, Vol. 3, No. 11. (16 November 2007) by Michael Hiller, Zhaiyi Zhang, Rolf Backofen, Stefan Stamm posted to exon mrna rna splicing by sebastien_vigneau on 2007-11-22 11:17:35 as

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splicing	30
intron	24
evolution	21
affymetrix	20
microarray	16
analysis	11
array	11
expression	11
gene	11
human	10
genome	8
nucleosome	8
rna	8
bioinformatics	7
h3k36me3	7
shuffling	7
rna-seq	6
transcription	6
differential	5
genomics	5
mouse	5
protein	5
sequence	5
transcript	5
transcriptome	5
variation	5
chromatin	4
codon	4
colon	4
dna	4
duplication	4
probe	4
utr	4
adipose	3
affy	3
alternative-splicing	3
alu	3
antisense	3
boundaries	3
brain	3
breast	3
bt474	3
cancer	3
cd4_t_cells	3
cerebellum	3
domain	3
heart	3
helitron	3
histone	3
hme	3
liver	3
lymph-node	3
mb435	3
mcf7	3
muscle	3
plant	3
statistics	3
t47d	3
testis	3
tissue-specific	3
transposon	3
usage	3
algorithm	2
alternate	2
alternative	2
as	2
bioconductor	2
cell	2
correlation	2
db	2
editing	2
gc	2
isoform	2
length	2
ma	2
nucleosome-positioning	2
pcr	2
pombe	2
primer	2
project_coexcoev	2
rat	2
repeats	2
rma	2
schizosaccharomyces	2
secondary_structure	2
snp	2
splice	2
synonymous	2
tissue	2
transcriptomics	2
vertebrate	2
whole	2
wide	2
yeast	2
altsplicing	1
conservation	1
elongation	1
genome-evolution	1
nature-genetics	1
variant	1

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