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Tag experimental_methodology [22 articles]

Recent papers classified by the tag experimental_methodology.
  • Short range order and collective dynamics of DMPC bilayers. A comparison between molecular dynamics simulations, x-ray, and neutron scattering experiments
    Biophys. J. (13 July 2007), biophysj.107.104885.
    by Jochen S Hub, Tim Salditt, Maikel C Rheinstadter, Bert L de Groot
    posted to biomembranes experimental_methodology molecular_dynamics molecular_simulation by sobolevnrm on 2007-11-01 11:13:58 as read along with 3 people and 1 group dimka char paulschlesinger baker-group
  • Electrophoretic light scattering from macromolecular solutions and conformational dynamics
    The Journal of Chemical Physics, Vol. 87, No. 8. (1987), pp. 4339-4343.
    by JB Hubbard, JA Mccammon
    posted to diffusion electrostatics experimental_methodology kinetics by sobolevnrm on 2008-02-09 23:07:21 as read along with 1 group baker-group
  • Dynamic personalities of proteins
    Nature, Vol. 450, No. 7172. (12 December 2007), pp. 964-972.
    by Katherine Henzler-Wildman, Dorothee Kern
    posted to allostery experimental_methodology molecular_dynamics protein_folding protein-ligand_interactions by sobolevnrm on 2008-01-22 12:33:20 as read along with 12 people and 1 group pavanghatty chad_davis allmensch choonpeng rsantana cjeans wilbur mijam kjell phoenixzxl higueruelo GeeSharpMinor baker-group
  • Cell water dynamics on multiple time scales
    Proceedings of the National Academy of Sciences, Vol. 105, No. 17. (29 April 2008), pp. 6266-6271.
    by Erik Persson, Bertil Halle
    posted to experimental_methodology solvation by sobolevnrm on 2008-06-13 11:37:37 as read along with 1 person and 1 group biehl baker-group
  • Analysis of X-ray and neutron scattering from biomacromolecular solutions
    Current Opinion in Structural Biology, Vol. 17, No. 5. (October 2007), pp. 562-571.
    by Maxim V Petoukhov, Dmitri Svergun
    posted to experimental_methodology structure by sobolevnrm on 2007-11-04 22:24:09 as read along with 2 people and 1 group choonpeng CameronNeylon baker-group
  • Recent progress in understanding hydrophobic interactions.
    Proc Natl Acad Sci U S A, Vol. 103, No. 43. (24 October 2006), pp. 15739-15746.
    by EE Meyer, KJ Rosenberg, J Israelachvili
    posted to experimental_methodology solvation by sobolevnrm on 2007-11-30 20:10:33 as read along with 3 people and 1 group Cristiano paulschlesinger hsekiguc baker-group
  • Glasslike behavior in aqueous electrolyte solutions
    The Journal of Chemical Physics, Vol. 128, No. 16. (2008)
    by David A Turton, Johannes Hunger, Glenn Hefter, Richard Buchner, Klaas Wynne
    posted to diffusion experimental_methodology solvation by sobolevnrm on 2008-06-05 11:53:46 as read along with 1 group baker-group
  • Observation of Immobilized Water Molecules around Hydrophobic Groups
    Physical Review Letters, Vol. 99, No. 14. (2007)
    by YLA Rezus, HJ Bakker
    posted to experimental_methodology nonpolar solvation by sobolevnrm on 2007-10-24 13:31:37 as read along with 3 people and 1 group dchen Cristiano Diego_Prada baker-group
  • An extended dynamical hydration shell around proteins.
    Proc Natl Acad Sci U S A, Vol. 104, No. 52. (26 December 2007), pp. 20749-20752.
    by S Ebbinghaus, SJ Kim, M Heyden, X Yu, U Heugen, M Gruebele, DM Leitner, M Havenith
    posted to diffusion experimental_methodology kinetics molecular_dynamics solvation by sobolevnrm on 2008-01-31 12:59:41 as read along with 1 person and 1 group choonpeng baker-group
  • The Effects of Dissolved Halide Anions on Hydrogen Bonding in Liquid Water
    J. Am. Chem. Soc., Vol. 129, No. 45. (14 November 2007), pp. 13847-13856.
    by JD Smith, RJ Saykally, PL Geissler
    posted to experimental_methodology molecular_simulation solvation by sobolevnrm on 2007-11-08 13:10:28 as read along with 1 group baker-group
  • Steric hindrance effects on surface reactions: applications to BIAcore
    Journal of Mathematical Biology, Vol. 55, No. 4. (11 October 2007), pp. 517-539.
    by David Edwards
    posted to diffusion experimental_methodology kinetics by sobolevnrm on 2007-10-26 12:09:00 as read along with 1 person and 1 group paulschlesinger baker-group
  • Convection Effects in the BIAcore Dextran Layer: Surface Reaction Model
    Bulletin of Mathematical Biology, Vol. 68, No. 3. (23 April 2006), pp. 627-654.
    by David Edwards
    posted to diffusion experimental_methodology kinetics by sobolevnrm on 2007-10-26 12:08:07 as read along with 1 person and 1 group paulschlesinger baker-group
  • Multiscale complex network of protein conformational fluctuations in single-molecule time series
    Proceedings of the National Academy of Sciences, Vol. 105, No. 2. (15 January 2008), pp. 536-541.
    by Chun-Biu Li, Haw Yang, Tamiki Komatsuzaki
    posted to experimental_methodology kinetics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2008-02-19 12:19:19 as read along with 3 people and 1 group ruvido biehl hsekiguc baker-group
  • Picosecond fluctuating protein energy landscape mapped by pressure temperature molecular dynamics simulation
    Proceedings of the National Academy of Sciences, Vol. 104, No. 44. (30 October 2007), pp. 17261-17265.
    by Lars Meinhold, Jeremy C Smith, Akio Kitao, Ahmed H Zewail
    posted to experimental_methodology molecular_dynamics protein_folding solvation by sobolevnrm on 2007-10-31 12:33:06 as read along with 1 group baker-group
  • Convection, diffusion and reaction in a surface-based biosensor: Modeling of cooperativity and binding site competition on the surface and in the hydrogel
    Journal of Colloid and Interface Science, Vol. 296, No. 2. (15 April 2006), pp. 527-537.
    by Konstantin Lebedev, Salvador Mafe, Pieter Stroeve
    posted to diffusion experimental_methodology kinetics by sobolevnrm on 2007-10-26 12:23:16 as read along with 1 person and 1 group paulschlesinger baker-group
  • Lipid bilayer structure determined by the simultaneous analysis of neutron and x-ray scattering data
    Biophys. J. (23 May 2008), biophysj.108.132662.
    by Norbert Kucerka, John F Nagle, Jonathan N Sachs, Scott Feller, Jeremy Pencer, Andrew J Jackson, John Katsaras
    posted to biomembranes experimental_methodology by sobolevnrm on 2008-07-24 12:08:34 as read along with 2 people and 1 group paulschlesinger agrossfield baker-group
  • A Proposed Time-Resolved X-Ray Scattering Approach to Track Local and Global Conformational Changes in Membrane Transport Proteins
    Structure, Vol. 16, No. 1. (8 January 2008), pp. 21-28.
    by Magnus Andersson, Jonathan Vincent, David van der Spoel, Jan Davidsson, Richard Neutze
    posted to allostery experimental_methodology molecular_dynamics by sobolevnrm on 2008-02-13 12:52:10 as read along with 1 person and 1 group r2s2 baker-group
  • Combining Efficient Conformational Sampling with a Deformable Elastic Network Model Facilitates Structure Refinement at Low Resolution
    Structure, Vol. 15, No. 12. (13 December 2007), pp. 1630-1641.
    by Gunnar F Schroder, Axel T Brunger, Michael Levitt
    posted to experimental_methodology quasiharmonic-models_elastic-network_gnm_nma_pca_etc structure by sobolevnrm on 2008-01-22 12:53:33 as read along with 4 people and 1 group aqeel cjeans jlh64 TOchi baker-group
  • Molecular simulation as an aid to experimentalists
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Wilfred F van Gunsteren, Jozica Dolenc, Alan E Mark
    posted to experimental_methodology molecular_dynamics molecular_simulation by sobolevnrm on 2008-03-12 11:07:09 as read along with 1 person and 1 group jlh64 baker-group
  • Hydrophobicity regained
    Protein Sci, Vol. 6, No. 6. (1 June 1997), pp. 1302-1307.
    by PA Karplus
    posted to electrostatics experimental_methodology nonpolar solvation by sobolevnrm on 2008-01-03 12:41:56 as read along with 1 person and 1 group paulschlesinger baker-group
  • Control of electrostatic interactions between F-actin and genetically modified lysozyme in aqueous media
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 15994-15999.
    by Lori K Sanders, Wujing Xian, Camilo Guaqueta, Michael J Strohman, Chuck R Vrasich, Erik Luijten, Gerard C Wong
    posted to electrostatics experimental_methodology by sobolevnrm on 2007-10-25 15:28:53 as ** along with 1 group baker-group
  • Cross-validation and bootstrapping are unreliable in small sample classification
    Pattern Recognition Letters, Vol. 29, No. 14. (15 October 2008), pp. 1960-1965.
    by A Isaksson, M Wallman, H Göransson, MG Gustafsson
    posted to experimental_methodology by jjrodriguez on 2008-09-17 12:25:26 as ** along with 4 people fabgoos lfriedl beiyu braynor
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