Tag fdr [195 articles] Export

Recent papers classified by the tag fdr.

	Patterns of Positive Selection in Six Mammalian Genomes [My Copy] PLoS Genet, Vol. 4, No. 8. (1 August 2008), e1000144. by Carolin Kosiol, Tomáš Vinař, Rute R. da Fonseca, et al.Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen, Adam Siepel posted to rate_of_evolution paml mammals fdr expression_level expression_breadth comparative_genomics by daveGerrard on 2009-10-28 09:51:51 as along with 11 people Garamonfok ilyashl diamantis renewang skembel madreach bpcusack gjuggler cabbagesofdoom djkt hdopazo
	Estimating the posterior probability that genome-wide association findings are true or false [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1807-1813. by Jozsef Bukszar, Joseph L. McClay, Edwin J. C. G. van den Oord posted to gwas fdr by zufar on 2009-10-23 18:17:10 as along with 3 people nklee djkt guhjy
	Rapid validation of Mascot search results via stable isotope labeling, pair picking, and deconvolution of fragmentation patterns. [My Copy] Molecular & cellular proteomics : MCP, Vol. 8, No. 8. (11 August 2009), pp. 2011-2022. by Samuel L. Volchenboum, Kolbrun Kristjansdottir, Donald Wolfgeher, Stephen J. Kron posted to proteomics fragmentation fdr algorithm by brianb on 2009-10-15 15:53:01 as
	False discovery rate, sensitivity and sample size for microarray studies [My Copy] Bioinformatics, Vol. 21, No. 13. (1 July 2005), pp. 3017-3024. by Yudi Pawitan, Stefan Michiels, Serge Koscielny, Arief Gusnanto, Alexander Ploner posted to fdr false_discovery_rate by zoex_99 on 2009-10-14 17:43:12 as along with 6 people jperkins bertelsen guhjy ugengma shikin wirawan
	A unified approach to false discovery rate estimation [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 303. by Korbinian Strimmer posted to statistics review methods fdr by Zephyrus on 2009-10-10 04:00:03 as along with 12 people rdiaz jlorent Gorzomagnificent daforerog bertelsen guhjy VGreiff dolchan barriot nuin joaocarrico shigepong
	fdrtool: a versatile R package for estimating local and tail area-based false discovery rates [My Copy] Bioinformatics, Vol. 24, No. 12. (15 June 2008), pp. 1461-1462. by Korbinian Strimmer posted to software fdr by rdiaz on 2009-10-09 13:07:56 as along with 4 people bertelsen isimpson guhjy APRegier
	RCMAT: a regularized covariance matrix approach to testing gene sets [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 300. by Phillip Yates, Mark Reimers posted to set ontology go gene fdr by rdiaz on 2009-10-01 11:13:09 as along with 5 people and 1 group dipenps stajich heliopais barriot neils Mycology
	Sparse linear discriminant analysis for simultaneous testing for the significance of a gene set/pathway and gene selection [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1145-1151. by Michael C. Wu, Lingsong Zhang, Zhaoxi Wang, David C. Christiani, Xihong Lin posted to pathway ontology go gene fdr fatigo expression discriminant differential analysis by rdiaz on 2009-09-30 15:08:09 as along with 4 people jfr praisan ipark-kaist guhjy
	FDR made easy in differential feature discovery and correlation analyses [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1461-1462. by Xuefeng B. Ling, Harvey Cohen, Joseph Jin, Irwin Lau, James Schilling posted to web statistics software p-value fdr by rdiaz on 2009-09-28 15:00:30 as along with 5 people fishtank brianb nuin idonaldson guhjy
	Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing [My Copy] Journal of the Royal Statistical Society. Series B (Methodological), Vol. 57, No. 1. (1995), pp. 289-300. by Yoav Benjamini, Yosef Hochberg posted to fdr by zufar on 2009-09-22 17:26:16 as along with 38 people and 4 groups ctacmo abrentnall jperkins CulCog jlorent bertelsen Zephyrus fisherp michaelbarton dakelley lwaldron polivares brianb ucbcjbm jfr xingxu emptyhb renewang Yanno sdvillal druvus natstreet czeller guhjy RMGraze oannes vplagnol frohike grahamc shigepong ccr axelon ugengma amsantos rschulz dragonrez isimpson vertikalist Biostatistics Bioinformatics Regulomics_UCHSC BTS-PT-AS-CS
	Resampling-Based Multiple Testing for Microarray Data Analysis [My Copy] (2003) by Y. Ge, Sandrine Dudoit, Rine Dudoit, Terence P. Speed, Yongchao Ge, Yongchao Ge posted to fdr by zufar on 2009-09-17 12:06:44 as
	Sample size calculations for controlling the distribution of false discovery proportion in microarray experiments [My Copy] Biostat, Vol. 10, No. 4. (1 October 2009), pp. 694-705. by Tomonori Oura, Shigeyuki Matsui, Koji Kawakami posted to fdr by rdiaz on 2009-09-15 16:41:06 as along with 2 people djkt renatomilani
	Simple tools for understanding risks: from innumeracy to insight [My Copy] BMJ, Vol. 327, No. 7417. (27 September 2003), pp. 741-744. by Gerd Gigerenzer, Adrian Edwards posted to teaching roc risk probability fdr by rdiaz on 2009-09-03 14:11:53 as along with 3 people mpromber rsr2001 wandall
	Automated protein (re)sequencing with MS/MS and a homologous database yields almost full coverage and accuracy [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2174-2180. by Xiaowen Liu, Yonghua Han, Denis Yuen, Bin Ma posted to proteomics fdr by brianb on 2009-08-28 19:04:09 as along with 1 person nuin
	Comments on the analysis of unbalanced microarray data [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2035-2041. by Kathleen F. Kerr posted to testing test permutation p-value multiple microarray fdr by rdiaz on 2009-08-21 12:15:16 as along with 5 people and 1 group Zephyrus reyez lwaldron dswan guhjy Bioinformatics
	Multiple testing in genome-wide association studies via hidden Markov models [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2802-2808. by Zhi Wei, Wenguang Sun, Kai Wang, Hakon Hakonarson posted to testing multiple hmm fdr by rdiaz on 2009-08-21 11:43:36 as along with 6 people and 1 group ppgardne djkt WJWilson pkonings jmeppley guhjy Journal picks
	Network-assisted protein identification and data interpretation in shotgun proteomics [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Jing Li, Lisa J. Zimmerman, Byung-Hoon Park, David L. Tabb, Daniel C. Liebler, Bing Zhang posted to proteomics network fdr by brianb on 2009-08-20 15:59:44 as along with 4 people ptrobajo reyez danmaclean biomcgary
	Error control variability in pathway-based microarray analysis [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2216-2221. by David L. Gold, Jeffrey C. Miecznikowski, Song Liu posted to testing pathway multiple fdr by rdiaz on 2009-08-20 11:09:26 as along with 4 people mkbehnke shikin VGreiff guhjy
	Identifying differentially expressed genes using false discovery rate controlling procedures. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 3. (12 February 2003), pp. 368-375. by Anat Reiner, Daniel Yekutieli, Yoav Benjamini posted to testing multiple microarray hypothesis fdr bioinformatics by ericrpaquet on 2009-08-18 14:26:27 as along with 8 people olberd zufar bertelsen maximilianh RMGraze maryee talponer shikin
	False Discovery Rates of Protein Identifications: A Strike against the Two-Peptide Rule [My Copy] Journal of Proteome Research, Vol. 8, No. 9. (4 September 2009), pp. 4173-4181. by Nitin Gupta, Pavel A. Pevzner posted to proteomics fdr by brianb on 2009-08-17 17:55:23 as along with 3 people gjuggler nedwards carlosjavierna
	Pattern-Based Confidentiality-Preserving Refinement [My Copy] Engineering Secure Software and Systems In Engineering Secure Software and Systems, Vol. 5429 (2009), pp. 43-59. by Holger Schmidt posted to security requirements refinement problem-frame fdr csp 2009 by michaelbanks on 2009-08-17 12:30:20 as
	False Discovery Rates and Related Statistical Concepts in Mass Spectrometry-Based Proteomics [My Copy] Journal of Proteome Research, Vol. 7, No. 1. (1 January 2008), pp. 47-50. by Hyungwon Choi, Alexey I. Nesvizhskii posted to proteomics fdr by brianb on 2009-08-17 02:55:41 as along with 4 people shikin nedwards guhjy robert
	Comparison of Novel Decoy Database Designs for Optimizing Protein Identification Searches Using ABRF sPRG2006 Standard MS/MS Data Sets [My Copy] Journal of Proteome Research, Vol. 8, No. 4. (3 April 2009), pp. 1782-1791. by Luca Bianco, Jennifer A. Mead, Conrad Bessant posted to proteomics fdr by brianb on 2009-08-17 02:55:12 as along with 1 person nedwards
	A Refined Method To Calculate False Discovery Rates for Peptide Identification Using Decoy Databases [My Copy] Journal of Proteome Research, Vol. 8, No. 4. (3 April 2009), pp. 1792-1796. by Pedro Navarro, Jesús Vázquez posted to proteomics fdr by brianb on 2009-08-17 02:54:25 as along with 1 person nedwards
	On the estimation of false positives in peptide identifications using decoy search strategy [My Copy] PROTEOMICS, Vol. 9, No. 1. (2009), pp. 194-204. by Changyu Shen, Quanhu Sheng, Jie Dai, Yixue Li, Rong Zeng, Haixu Tang posted to proteomics fdr by brianb on 2009-08-17 02:54:07 as along with 1 person nedwards
	Were genome-wide linkage studies a waste of time? Exploiting candidate regions within genome-wide association studies [My Copy] Genetic Epidemiology, Vol. 9999, No. 9999. (2009), n/a. by Yun J. Yoo, Shelley B. Bull, Andrew D. Paterson, Daryl Waggott, The Diabetes Control and Complications Trial, Lei Sun posted to linkage gwas fdr candidate by pkonings on 2009-08-14 10:45:44 as
	Statistical significance for genomewide studies [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 16. (5 August 2003), pp. 9440-9445. by John D. Storey, Robert Tibshirani posted to statistics statistical qvalue q-value fdr by arider1 on 2009-08-13 20:39:07 as along with 34 people and 2 groups jperkins ilyashl icecrown bertelsen jbhiatt aviad_work biomcgary daforerog treangen druvus vertikalist maximilianh diging_data egreenfest guhjy textoris RMGraze jen_drake hggr frohike schuylrp grahamc incovoma kynn sancho 7ofAnn nicholso shikin wirawan BrianTomasik roys sconlan zhouyu bpcusack BTS-PT-AS-CS Bioinformatics
	On reliable discovery of molecular signatures [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 January 2009), 38. by Roland Nilsson, Johan Bjorkegren, Jesper Tegner posted to classification fdr herman microarrray signature by ptrobajo on 2009-08-03 08:05:02 as along with 4 people and 1 group Zephyrus renatomilani guhjy jfr Roswell Cancer Crosstalk
	Integrated platform for manual and high-throughput statistical validation of tandem mass spectra [My Copy] PROTEOMICS, Vol. 9, No. 11. (June 2009), pp. 3115-3125. by Kebing Yu, Anthony Sabelli, Lisa DeKeukelaere, et al.Richard Park, Suzanne Sindi, Constantine A. Gatsonis, Arthur Salomon posted to fdr fragmentation proteomics statistics by brianb on 2009-07-31 20:35:09 as along with 1 person Ronald80
	Multiple interval mapping for gene expression QTL analysis. [My Copy] Genetica (9 May 2009) by Wei Zou, Zhao-Bang B. Zeng posted to eqtl fdr software by guhjy on 2009-07-22 04:53:44 as
	Improving sensitivity in proteome studies by analysis of false discovery rates for multiple search engines. [My Copy] Proteomics, Vol. 9, No. 5. (March 2009), pp. 1220-1229. by A. R. Jones, J. A. Siepen, S. J. Hubbard, N. W. Paton posted to fdr proteomics by brianb on 2009-07-20 16:51:01 as along with 1 person rjazwiec
	The fluctuation-dissipation relation: how does one compare correlation functions and responses? [My Copy] (16 Jul 2009) by D. Villamaina, A. Baldassarri, A. Puglisi, A. Vulpiani posted to correlation effective_temperature einstein fdr fluctuation_dissipation kubo langevin_equation non_equilibrium response by marinari on 2009-07-20 12:17:58 as along with 2 people scratchmandoo yonyoni
	Protein Identification False Discovery Rates for Very Large Proteomics Data Sets Generated by Tandem Mass Spectrometry [My Copy] Mol Cell Proteomics, Vol. 8, No. 11. (1 November 2009), pp. 2405-2417. by Lukas Reiter, Manfred Claassen, Sabine P. Schrimpf, et al.Marko Jovanovic, Alexander Schmidt, Joachim M. Buhmann, Michael O. Hengartner, Ruedi Aebersold posted to bioinformatics fdr proteomics by brianb on 2009-07-19 03:18:55 as along with 1 person sjcockell
	Linear Mixed Model Selection for False Discovery Rate Control in Microarray Data Analysis. [My Copy] Biometrics (12 June 2009) by Cumhur Yusuf Y. Demirkale, Dan Nettleton, Tapabrata Maiti posted to lmm fdr ma by guhjy on 2009-07-12 10:24:53 as
	A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (8 July 2009), 209. by Antonio Carvajal-Rodríguez, Jacobo de Uña-Alvarez, Emilio Rolán-Alvarez posted to fdr multiple-testing by humburg on 2009-07-09 04:47:03 as along with 8 people olberd natstreet guhjy druvus joaocarrico djkt barriot jmeppley
	FDR Explorer [My Copy] Formal Aspects of Computing, Vol. 21, No. 1. (1 February 2009), pp. 133-154. by Leo Freitas, Jim Woodcock posted to 2009 automata csp fdr model-checking refinement labelled-transition-system by michaelbanks on 2009-07-02 11:37:04 as along with 3 people mishra_satish newdawn leonardo
	IDPicker 2.0: Improved Protein Assembly with High Discrimination Peptide Identification Filtering [My Copy] Journal of Proteome Research, Vol. 8, No. 8. (7 August 2009), pp. 3872-3881. by Ze-Qiang Ma, Surendra Dasari, Matthew C. Chambers, et al.Michael D. Litton, Scott M. Sobecki, Lisa J. Zimmerman, Patrick J. Halvey, Birgit Schilling, Penelope M. Drake, Bradford W. Gibson, David L. Tabb posted to fdr proteomics by brianb on 2009-06-27 14:59:14 as along with 1 person and 1 group whitead Jiang Research Group
	Computational principles of determining and improving mass precision and accuracy for proteome measurements in an orbitrap [My Copy] Journal of the American Society for Mass Spectrometry (20 May 2009) by Jürgen Cox, Matthias Mann posted to fdr proteomics by brianb on 2009-06-27 14:58:51 as
	On a generalized false discovery rate [My Copy] (17 Jun 2009) by Sanat K. Sarkar, Wenge Guo posted to fdr multiple-testing statistics by arsyed on 2009-06-19 00:57:37 as
	Reporting and interpretation in genome-wide association studies. [My Copy] International journal of epidemiology, Vol. 37, No. 3. (11 June 2008), pp. 641-653. by Jon Wakefield posted to bayes factors fdr gwa by bertrandservin on 2009-06-03 19:35:23 as along with 2 people guhjy kharke
	Kerfdr: a semi-parametric kernel-based approach to local false discovery rate estimation. [My Copy] BMC bioinformatics, Vol. 10 (16 March 2009), 84. by Mickael Guedj, Stephane Robin, Alain Celisse, Gregory Nuel posted to fdr r semip by guhjy on 2009-05-29 10:40:36 as along with 3 people nuin fpattyn rdiaz
	QVALITY: non-parametric estimation of q-values and posterior error probabilities. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 964-966. by Lukas Kall, John D. Storey, William S. Noble posted to fdr multiplicity nonp q-value by guhjy on 2009-05-29 04:40:19 as along with 5 people jfr djkt cassj nuin rdiaz
	Empirical null and false discovery rate analysis in neuroimaging [My Copy] NeuroImage, Vol. 44, No. 1. (01 January 2009), pp. 71-82. by A. Schwartzman, R. Dougherty, J. Lee, D. Ghahremani, J. Taylor posted to fdr by jirak on 2009-05-15 13:26:36 as
	Modified FDR controlling procedure for multi-stage analyses. [My Copy] Statistical applications in genetics and molecular biology, Vol. 8, No. 1. (January 2009) by C. Tuglus, M. J. van der Laan posted to fdr ma by guhjy on 2009-05-05 12:38:48 as along with 1 person pbellec
	Estimation and control of multiple testing error rates for microarray studies [My Copy] Brief Bioinform, Vol. 7, No. 1. (1 March 2006), pp. 25-36. by Stanley B. Pounds posted to fdr multiple_testing review by jfr on 2009-05-04 13:53:04 as along with 2 people jperkins shikin
	Hit selection with false discovery rate control in genome-scale RNAi screens. [My Copy] Nucleic acids research, Vol. 36, No. 14. (August 2008), pp. 4667-4679. by X. D. Zhang, P. F. Kuan, M. Ferrer, et al.X. Shu, Y. C. Liu, A. T. Gates, P. Kunapuli, E. M. Stec, M. Xu, S. D. Marine, D. J. Holder, B. Strulovici, J. F. Heyse, A. S. Espeseth posted to algorithm bayesian fdr hit-selection rnai screening statistics by paszkows on 2009-04-23 15:33:21 as along with 3 people aviad_work aramesh2 guhjy
	A Formal Description Method for Aspect-Oriented Statechart Based on CSP [My Copy] Computer Science and Computational Technology, 2008. ISCSCT '08. International Symposium on In Computer Science and Computational Technology, 2008. ISCSCT '08. International Symposium on, Vol. 2 (2008), pp. 750-753. by Bin Wang, Chunhua Zhu, Jinfang Sheng posted to statecharts fdr csp aspects 2008 by leonardo on 2009-04-22 12:23:03 as
	Comparative Evaluation of Tandem MS Search Algorithms Using a Target-Decoy Search Strategy [My Copy] Mol Cell Proteomics, Vol. 6, No. 9. (1 September 2007), pp. 1599-1608. by Brian M. Balgley, Tom Laudeman, Li Yang, Tao Song, Cheng S. Lee posted to bioinformatics fdr proteomics by brianb on 2009-04-20 15:29:39 as along with 2 people robert nedwards
	Large scale analysis of MASCOT results using a Mass Accuracy-based THreshold (MATH) effectively improves data interpretation. [My Copy] Journal of proteome research, Vol. 4, No. 4. (g 2005), pp. 1353-1360. by P. A. Rudnick, Y. Wang, E. Evans, C. S. Lee, B. M. Balgley posted to bioinformatics fdr proteomics by brianb on 2009-04-20 15:20:54 as
	Rapid and accurate multiple testing correction and power estimation for millions of correlated markers. [My Copy] PLoS genetics, Vol. 5, No. 4. (17 April 2009), e1000456. by Buhm Han, Hyun Min M. Kang, Eleazar Eskin posted to computing fdr gwas multiple power testing by rdiaz on 2009-04-17 16:58:46 as along with 11 people xingxu brianb nuin buyske ekostem jdbowes guhjy psique ptrobajo emptyhb djkt

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statistics	46
proteomics	39
microarray	24
bioinformatics	23
feature_selection	20
ma	18
csp	12
multiple	10
software	10
bayes	9
differential	9
gwa	9
multiple_testing	8
p-value	8
testing	8
r	7
discovery	6
false	6
multiplicity	6
power	6
rate	6
algorithm	5
bias	5
expression	5
gene-expression	5
q-value	5
comparison	4
fmri	4
gene	4
go	4
gwas	4
model-checking	4
multiple-testing	4
refinement	4
review	4
security	4
sex_comb_ref	4
statistical-testing	4
stats	4
test	4
tool	4
2001	3
2009	3
analysis	3
genetics	3
hypothesis	3
methodology	3
model_checking	3
protocol	3
rnai	3
significance	3
statecharts	3
statistical	3
2005	2
2007	2
2008	2
bayesian	2
cancer	2
chromatography	2
classification	2
confounders	2
copy	2
correction	2
design	2
empirical	2
enrichment	2
eqtl	2
factors	2
false_discovery	2
fatigo	2
filtering	2
fragmentation	2
gene-ontology	2
gene_ontology	2
geneset	2
herman	2
intense	2
meta-analysis	2
multipletesting	2
network	2
nonp	2
ontology	2
pathway	2
permutation	2
phosphorylation	2
pmoi	2
ptm	2
qtl	2
qvalue	2
r-software	2
sample	2
sample-size	2
sensitivity	2
size	2
teaching	2
2006	1
aspects	1
hmm	1
microarray_analysis	1
verification	1

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