Tag flexibility [at least 200 articles] Export

Recent papers classified by the tag flexibility.

	Flexibility Ratios and Manufacturing Strategy [My Copy] MANAGEMENT SCIENCE, Vol. 40, No. 11. (1 November 1994), pp. 1444-1454. by John E. Ettlie, Joan D. Penner-Hahn posted to strategy ratios manufacturing flexibility by derchao on 2009-11-10 06:59:26 as
	Docking Ligands into Flexible and Solvated Macromolecules. 5. Force-Field-Based Prediction of Binding Affinities of Ligands to Proteins [My Copy] Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Pablo Englebienne, Nicolas Moitessier posted to solvent prediction nov09 ligand flexibility docking affinity by nickolay on 2009-11-03 20:35:14 as
	The role of dynamic conformational ensembles in biomolecular recognition [My Copy] Nature Chemical Biology, Vol. 5, No. 11. (10 October 2009), pp. 789-796. by David D. Boehr, Ruth Nussinov, Peter E. Wright posted to scissors flexibility 2009 by higueruelo on 2009-11-03 12:19:15 as along with 2 people ubcg08l paulschlesinger
	Successful execution of product development projects: Balancing firmness and flexibility in the innovation process [My Copy] Journal of Operations Management, Vol. 18, No. 4. (June 2000), pp. 401-425. by M. Tatikonda posted to successful projects product process innovation flexibility firmness execution development balancing by derchao on 2009-11-02 00:54:15 as
	Beta-adrenergic Modulation of Cognitive Flexibility during Stress [My Copy] J. Cognitive Neuroscience, Vol. 19, No. 3. (March 2007), pp. 468-478. by Jessica K. Alexander, Ashleigh Hillier, Ryan M. Smith, Madalina E. Tivarus, David Q. Beversdorf posted to stress flexibility cognition by achinerarias on 2009-10-31 21:22:12 as along with 1 person and 1 group kristina VisionLab
	Low-frequency vibrational modes and infrared absorbance of red, blue and green opsin. [My Copy] Journal of molecular modeling, Vol. 15, No. 8. (August 2009), pp. 959-969. by Saravana Prakash P. Thirumuruganandham, Herbert M. Urbassek posted to membrane_proteins md flexibility energy_landscape dynamics disorder by xdeupi on 2009-10-25 11:22:15 as along with 2 people saravan gcaltabiano
	The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14349-14354. by Ahmet Bakan, Ivet Bahar posted to nma flexibility essential-dynamics enm anm by ahmetbakan on 2009-10-18 19:11:57 as along with 5 people and 1 group apaydin anuragsethi jmccammon okapi boris_aguilar McCammon
	The Cool Brand, Affective Activism and Japanese Youth [My Copy] Theory Culture Society, Vol. 26, No. 2-3. (1 March 2009), pp. 89-111. by Anne Allison posted to precarity japan flexibility activism by alexandersragtimeband on 2009-10-17 17:48:26 as
	Coexistence of Flexibility and Stability of Proteins: An Equation of State [My Copy] PLoS ONE, Vol. 4, No. 10. (9 October 2009), e7296. by Marina de Leeuw, Shlomi Reuveni, Joseph Klafter, Rony Granek posted to stability protein_folding mathematical_model flexibility by jjray on 2009-10-15 16:44:14 as
	Social Networks, Learning, and Flexibility: Sourcing Scientific Knowledge in New Biotechnology Firms [My Copy] Organization Science, Vol. 7, No. 4. (1996), pp. 428-443. by Julia P. Liebeskind, Amalya L. Oliver, Lynne Zucker, Marilynn Brewer posted to sourcing social scientific new networks learning knowledge flexibility firms biotechnology by derchao on 2009-10-15 09:09:43 as
	Identification of two distinct inactive conformations of the beta2-adrenergic receptor reconciles structural and biochemical observations. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4689-4694. by Ron O. Dror, Daniel H. Arlow, David W. Borhani, Morten Ø. Jensen, Stefano Piana, David E. Shaw posted to theory structure modeling md flexibility dynamics b2ar activation by xdeupi on 2009-10-08 11:13:04 as along with 2 people dimka agrossfield
	Conservation of Side-Chain Dynamics Within a Protein Family [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Anthony B. Law, Ernesto J. Fuentes, Andrew L. Lee posted to protein_family protein_dynamics flexibility by skywalkerus02 on 2009-10-06 05:53:15 as along with 4 people and 3 groups anuragsethi pablocarb barry sobolevnrm structural_bioinformatics McCammon baker-group
	Subtype Polymorphisms Among HIV-1 Protease Variants Confer Altered Flap Conformations and Flexibility [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Jamie L. Kear, Mandy E. Blackburn, Angelo M. Veloro, Ben M. Dunn, Gail E. Fanucci posted to jacs hivp flexibility conformation 2009 by klexa on 2009-09-29 23:03:26 as
	Flexible protein-ligand docking by global energy optimization in internal coordinates [My Copy] Proteins: Structure, Function, and Genetics, Vol. 29, No. S1. (1997), pp. 215-220. by Maxim Totrov, Ruben Abagyan posted to protein-ligand flexibility docking 1997 by klexa on 2009-09-29 23:00:44 as along with 1 person schlauchi
	The sensitivity of the results of molecular docking to induced fit effects: application to thrombin, thermolysin and neuraminidase. [My Copy] J Comput Aided Mol Des, Vol. 13, No. 6. (November 1999), pp. 547-562. by C. W. Murray, C. A. Baxter, A. D. Frenkel posted to induced_fit flexibility docking 1999 by klexa on 2009-09-29 23:00:21 as along with 1 person schlauchi
	Docking small ligands in flexible binding sites [My Copy] Journal of Computational Chemistry, Vol. 19, No. 1. (1998), pp. 21-37. by Joannis Apostolakis, Andreas Plückthun, Amedeo Caflisch posted to ligand flexibility docking binding 1998 by klexa on 2009-09-29 22:57:39 as along with 3 people karinaecomp BragilMassoud schlauchi
	GlamDock: Development and Validation of a New Docking Tool on Several Thousand Protein-Ligand Complexes. [My Copy] J Chem Inf Model, Vol. 47, No. 4. (g 2007), pp. 1657-1672. by S. Tietze, J. Apostolakis posted to protein-ligand flexibility docking 2007 by klexa on 2009-09-29 21:19:16 as along with 3 people BragilMassoud schlauchi sim82
	A Flexible Approach to Induced Fit Docking [My Copy] J. Med. Chem. (22 November 2007) by Sander B. Nabuurs, Markus Wagener, Jacob de Vlieg posted to sbdd protein-ligand induced_fit flexibility docking 2007 by klexa on 2009-09-29 21:17:05 as along with 2 people oteri daevans
	Similarity Based Docking. [My Copy] J Chem Inf Model (29 November 2007) by J Marialke, S Tietze, Joannis Apostolakis posted to similiarity flexibility docking 2007 by klexa on 2009-09-29 21:15:33 as along with 3 people apostola daevans sim82
	Do Structurally Similar Ligands Bind in a Similar Fashion? [My Copy] Journal of Medicinal Chemistry, Vol. 49, No. 23. (1 November 2006), pp. 6716-6725. by Jonas Bostrom, Anders Hogner, Stefan Schmitt posted to solvation similiarity side-chain sbdd protein_flexibility ligand flexibility drug_discovery 2006 by klexa on 2009-09-29 20:45:59 as along with 4 people schlauchi daevans superpyrin nickolay
	Conformational Landscape of the Human Immunodeficiency Virus Type 1 Reverse Transcriptase Non-Nucleoside Inhibitor Binding Pocket: Lessons for Inhibitor Design from a Cluster Analysis of Many Crystal Structures [My Copy] Journal of Medicinal Chemistry, Vol. 0, No. 0. (0000) by Kristina A. Paris, Omar Haq, Anthony K. Felts, Kalyan Das, Eddy Arnold, Ronald M. Levy posted to hiv1 flexibility 2009 by higueruelo on 2009-09-26 12:40:52 as
	Identification of dynamic structural domains in proteins, analysis of local bond flexibility and application for interpretation of NMR experiments [My Copy] Molecular Simulation (2009) by Maria Stepanova posted to protein_g prion_proteins nmr_experiments nmr md flexibility drug-design bioinformatics by flbarroso on 2009-09-26 05:01:07 as
	Influence of the g- conformation of Ser and Thr on the structure of transmembrane helices. [My Copy] Journal of structural biology (17 September 2009) by Xavier Deupi, Mireia Olivella, Arantxa Sanz, Nicole Dölker, Mercedes Campillo, Leonardo Pardo posted to tm5 theory structure ser plasticity helix hbond flexibility dynamics amber activation by xdeupi on 2009-09-25 14:15:01 as
	Secondary and Tertiary Structure Changes of Reconstituted LmrA Induced by Nucleotide Binding or Hydrolysis [My Copy] Journal of Biological Chemistry, Vol. 275, No. 15. (14 April 2000), pp. 10962-10967. by Catherine Vigano, Abelardo Margolles, Hendrik W. van Veen, Wil N. Konings, Jean-Marie Ruysschaert posted to thesis nucleotide_binding_domain flexibility abc_transporter by Gabriel439 on 2009-09-23 23:05:31 as along with 1 person EvaKaltenborn
	Nucleotide-induced conformational changes of MalK, a bacterial ATP binding cassette transporter protein. [My Copy] Journal of Biological Chemistry, Vol. 269, No. 32. (12 August 1994), pp. 20456-20461. by E. Schneider, S. Wilken, R. Schmid posted to thesis nucleotide_binding_domain flexibility abc_transporter by Gabriel439 on 2009-09-23 23:04:16 as
	Probing the microscopic flexibility of DNA from melting temperatures [My Copy] Nature Physics, Vol. 5, No. 10. (30 August 2009), pp. 769-773. by Gerald Weber, Jonathan W. Essex, Cameron Neylon posted to flexibility dna by yse on 2009-09-16 19:11:26 as along with 1 person CameronNeylon
	E-business's impact on organizational flexibility [My Copy] Journal of Business Research, Vol. 62, No. 11. (November 2009), pp. 1071-1080. by Paul A. Phillips, Claire Wright posted to organizational impact flexibility e-businesss by derchao on 2009-09-10 13:36:03 as
	A longitudinal study of Japanese manufacturing strategies for quality, JIT and flexibility [My Copy] Asian Business & Management, Vol. 8, No. 3. (September 2009), pp. 325-356. by Shirley J. Daniel, Wolf D. Reitsperger, Kayo Morse posted to study strategies quality manufacturing longitudinal jit japanese flexibility by derchao on 2009-09-07 15:32:10 as
	Global distribution of conformational states derived from redundant models in the PDB points to non-uniqueness of the protein structure [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 26. (30 June 2009), pp. 10505-10510. by Prasad V. Burra, Ying Zhang, Adam Godzik, Boguslaw Stec posted to protein-ensembles flexibility by ubcg08l on 2009-09-04 13:22:13 as along with 6 people and 1 group apaydin sobolevnrm philcarter aalibes TRHvidsten zwang Orengo Group Journal Picks
	The flexible pocketome engine for structural chemogenomics. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 575 (2009), pp. 249-279. by Ruben Abagyan, Irina Kufareva posted to protein-ensembles pockets flexibility docking by ubcg08l on 2009-09-04 13:10:43 as
	Role of Chemical Structure in Fragility of Polymers: A Qualitative Picture [My Copy] Macromolecules, Vol. 41, No. 19. (14 October 2008), pp. 7232-7238. by Kumar Kunal, Christopher G. Robertson, Sebastian Pawlus, Steven F. Hahn, Alexei P. Sokolov posted to polymer fragility flexibility by 6rheology on 2009-09-04 09:59:07 as
	Interlinking positive and negative feedback loops creates a tunable motif in gene regulatory networks [My Copy] Physical Review E, Vol. 80, No. 1. (July 2009) by Xiao-Jun Tian, Xiao-Peng Zhang, Feng Liu, Wei Wang posted to synthetic_biology gene_regulation flexibility feedback by jjray to the group Synthetic Biology on 2009-09-03 23:06:15 as
	The origin of allosteric functional modulation: multiple pre-existing pathways. [My Copy] Structure (London, England : 1993), Vol. 17, No. 8. (12 August 2009), pp. 1042-1050. by Antonio del Sol, Chung-Jung J. Tsai, Buyong Ma, Ruth Nussinov posted to flexibility allosteric 2009 by higueruelo on 2009-09-03 14:10:36 as along with 4 people and 2 groups ubcg08l pablocarb okapi barry structural_bioinformatics McCammon
	The energy landscapes and motions of proteins. [My Copy] Science (New York, N.Y.), Vol. 254, No. 5038. (13 December 1991), pp. 1598-1603. by H. Frauenfelder, S. G. Sligar, P. G. Wolynes posted to theory review plasticity kinetics flexibility energy_landscape dynamics active-state activation by xdeupi on 2009-08-31 15:05:33 as along with 3 people FilipeMaia naitsabes kjell
	Design for change: Flexible planning strategies for the 1990s and beyond [My Copy] Journal of Urban Design, Vol. 2, No. 3. (1997), pp. 277-295. by Avi Friedman posted to flexibility by makiryu on 2009-08-30 19:27:31 as
	Insights into protein flexibility: The relationship between normal modes and conformational change upon protein–protein docking [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 30. (29 July 2008), pp. 10390-10395. by Sara E. Dobbins, Victor I. Lesk, Michael J. E. Sternberg posted to flexibility docking by ras on 2009-08-21 00:36:38 as along with 1 person edws
	Structural and Biophysical Characterization of XIAP BIR3 G306E Mutant: Insights in Protein Dynamics and Application for Fragment-Based Drug Design. [My Copy] Chemical biology & drug design (29 July 2009) by Cathy D. Moore, Haihong Wu, Ben Bolanños, et al.Simon Bergqvist, Alexei Brooun, Tom Pauly, Dawn Nowlin posted to 2009 flexibility fragments mutant-design ppi sm xf by higueruelo on 2009-08-10 14:12:39 as
	Flexibility and packing in proteins [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 3. (5 February 2002), pp. 1274-1279. by Bertil Halle posted to flexibility proteins by edws on 2009-08-06 08:14:16 as along with 7 people and 3 groups Diego_Prada barry sobolevnrm ana aqeel allmensch hmk baker-group structural_bioinformatics Bioinformatics
	Hierarchical plasticity from pair distance fluctuations [My Copy] Physical Biology, Vol. 6, No. 3. (September 2009), 036017. by S. A. Menor, Adam M. Graff, M. F. Thorpe posted to 2009 complex flexibility ppi by higueruelo on 2009-07-29 14:32:48 as along with 1 person sobolevnrm
	Docking Ligands into Flexible and Solvated Macromolecules. 4. Are Popular Scoring Functions Accurate for this Class of Proteins? [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 6. (22 June 2009), pp. 1568-1580. by Pablo Englebienne, Nicolas Moitessier posted to accuracy bridging chemscore complexes consensus drugscorecsd ehits flexibility function functions glidescore goldscore ligand molecules plp1 pose-prediction protein rankscore scoring water xscore by zimbo1 on 2009-07-23 13:01:57 as along with 1 person reyez
	FlexServ: an integrated tool for the analysis of protein flexibility [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1709-1710. by Jordi Camps, Oliver Carrillo, Agusti Emperador, et al.Laura Orellana, Adam Hospital, Manuel Rueda, Damjan Cicin-Sain, Marco D'Abramo, Josep L. Gelpi, Modesto Orozco posted to bioinformatics flexibility protein by flbarroso on 2009-07-21 19:18:29 as along with 2 people and 1 group sobolevnrm kshameer structural_bioinformatics
	Intermodular Linker Flexibility Revealed from Crystal Structures of Adjacent Cellulosomal Cohesins of Acetivibrio cellulolyticus [My Copy] Journal of Molecular Biology, Vol. 391, No. 1. (07 August 2009), pp. 86-97. by Ilit Noach, Felix Frolow, Orly Alber, Raphael Lamed, Linda J. W. Shimon, Edward A. Bayer posted to crystal-structure flexibility by carlosjavierna on 2009-07-20 04:12:26 as
	Dynamic energy landscape view of coupled binding and protein conformational change: Induced-fit versus population-shift mechanisms [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 32. (12 August 2008), pp. 11182-11187. by Kei-ichi Okazaki, Shoji Takada posted to activation active-state dynamics energy_landscape flexibility kinetics modeling nmr plasticity theory by xdeupi on 2009-07-11 11:26:37 as along with 8 people and 2 groups oteri bmduggan okapi aqeel raik ruvido barry zwang structural_bioinformatics McCammon
	Essential dynamics of proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 17, No. 4. (December 1993), pp. 412-425. by Andrea Amadei, Antonius B. M. Linssen, Herman J. C. Berendsen posted to essential_dynamics flexibility by kazemi on 2009-07-08 10:48:55 as along with 10 people and 1 group Diego_Prada baaden aqeel yongzhao ttjoseph ffranca allmensch carlescorbi dimka nigham TSRI_MGL
	Luxury accommodations: the expanding role of structural plasticity in protein–protein interactions [My Copy] Structure, Vol. 8, No. 7. (July 2000), pp. R137-R142. by E. Sundberg, R. Mariuzza posted to flexibility protein-protein by flbarroso on 2009-07-07 19:03:25 as
	Elucidating Protein Thermodynamics from the Three-Dimensional Structure of the Native State Using Network Rigidity [My Copy] Vol. 88, No. 2. (1 February 2005), pp. 903-915. by Donald J. Jacobs, Sargis Dallakyan posted to dcm first flexibility protein_dynamics by fl on 2009-07-07 16:32:35 as
	Structural stability of binding sites: Consequences for binding affinity and allosteric effects [My Copy] Proteins: Structure, Function, and Genetics, Vol. 41, No. S4. (2000), pp. 63-71. by Irene Luque, Ernesto Freire posted to allosteric flexibility gibbs by fl on 2009-07-07 11:08:32 as along with 2 people allmensch aqeel
	Four-Dimensional Docking: A Fast and Accurate Account of Discrete Receptor Flexibility in Ligand Docking [My Copy] Journal of Medicinal Chemistry, Vol. 52, No. 2. (22 January 2009), pp. 397-406. by Giovanni Bottegoni, Irina Kufareva, Maxim Totrov, Ruben Abagyan posted to docking flexibility protein by fl on 2009-07-07 09:42:19 as along with 4 people sschurer carlosjavierna jerome higueruelo
	How organizational flexibility affects new product development in an uncertain environment: Evidence from China☆ [My Copy] International Journal of Production Economics, Vol. 120, No. 1. (July 2009), pp. 18-29. by Yi Liu, Yuan Li, Zelong Wei posted to affect china development environment evidence flexibility how new organizational product uncertain by derchao on 2009-07-07 03:55:56 as
	Crystal structure of the Pyrococcus horikoshii isopropylmalate isomerase small subunit provides insight into the dual substrate specificity of the enzyme. [My Copy] Journal of molecular biology, Vol. 344, No. 2. (19 November 2004), pp. 325-333. by Y. Yasutake, M. Yao, N. Sakai, T. Kirita, I. Tanaka posted to enzyme-promis-paper enzyme flexibility promiscuity secondary by pablocarb on 2009-07-06 15:52:16 as

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docking	46
dynamics	35
protein	32
xf	28
2008	25
2009	23
2007	21
md	19
review	17
ppi	16
structure	16
development	13
disorder	12
nma	11
2006	9
graph	9
ligand	9
nmr	9
sm	9
activation	8
allosteric	8
protein-ligand	8
sidechain	8
theory	8
workflow	8
2004	7
entropy	7
2005	6
binding	6
conformation	6
enzymes	6
folding	6
hinge	6
modeling	6
pfc	6
process	6
scoring	6
working_memory	6
data	5
ef	5
helix	5
manufacturing	5
molecular_dynamics	5
product	5
protein_structure	5
ser	5
sm-prot	5
task_switching	5
algorithm	4
change	4
coarse-graining	4
dcm	4
design	4
evolution	4
fragments	4
free_energy	4
hbond	4
hiv1	4
membrane_proteins	4
p53	4
prediction	4
protein-protein	4
protein_dynamics	4
proteins	4
robustness	4
sbdd	4
side-chain	4
strategic	4
transmembrane	4
virtual_screening	4
2002	3
alignment	3
backbone	3
balance	3
biology	3
brain_development	3
crisis	3
energy_landscape	3
enzyme	3
erp	3
firm	3
froda	3
induced_fit	3
industry	3
interface	3
kinases	3
management	3
mdm2	3
metric	3
morfs	3
normal_modes	3
organizational	3
performance	3
plasticity	3
protein-ensembles	3
set	3
shifting	3
thermo	3
thr	3
water	3

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