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	Combinatorial binding predicts spatio-temporal cis-regulatory activity [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong posted to tfnets fly combinatorial_control by roys on 2009-11-08 19:15:53 as along with 10 people emptyhb toszko inesdesantiago fenghezi balabu iskathy djkt megraw TRHvidsten pedrobeltrao
	Motif-Blind, Genome-Wide Discovery of cis-Regulatory Modules in Drosophila and Mouse [My Copy] Developmental Cell, Vol. 17, No. 4. (20 October 2009), pp. 568-579. by Miriam R. Kantorovitz, Majid Kazemian, Sarah Kinston, et al.Diego Miranda-Saavedra, Qiyun Zhu, Gene E. Robinson, Berthold Göttgens, Marc S. Halfon, Saurabh Sinha posted to tf rodents prediction human fly enhancer development by djkt on 2009-11-04 20:55:41 as
	Speeding molecular recognition by using the folding funnel: The fly-casting mechanism [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 16. (1 August 2000), pp. 8868-8873. by Benjamin A. Shoemaker, John J. Portman, Peter G. Wolynes posted to fly casting_wolynes by chemrahul82 on 2009-10-28 22:52:30 as along with 3 people and 1 group pdelosri allmensch cactus EPFL_SB_ITP_LBS
	Regulatory Divergence in Drosophila melanogaster and D. simulans, a Genomewide Analysis of Allele-Specific Expression [My Copy] Genetics, Vol. 183, No. 2. (1 October 2009), pp. 547-561. by Rita M. Graze, Lauren M. McIntyre, Bradley J. Main, Marta L. Wayne, Sergey V. Nuzhdin posted to variation fly expression by djkt on 2009-10-28 19:38:32 as along with 1 person and 1 group daveGerrard BergmanLab
	What is there left to learn about the Drosophila clock? [My Copy] Cold Spring Harbor symposia on quantitative biology, Vol. 72 (2007), pp. 243-250. by J. Blau, F. Blanchard, B. Collins, et al.D. Dahdal, A. Knowles, D. Mizrak, M. Ruben posted to fly by rikuhiro on 2009-10-28 12:32:51 as
	Analysis of the Drosophila Clock Promoter Reveals Heterogeneity in Expression between Subgroups of Central Oscillator Cells and Identifies a Novel Enhancer Region [My Copy] J Biol Rhythms, Vol. 24, No. 5. (1 October 2009), pp. 353-367. by Jennet O. Gummadova, Graham A. Coutts, Nicholas R. Glossop posted to fly clk by rikuhiro on 2009-10-27 11:48:59 as
	Intraspecific Polymorphism to Interspecific Divergence: Genetics of Pigmentation in Drosophila [My Copy] Science, Vol. 326, No. 5952. (23 October 2009), pp. 540-544. by Patricia J. Wittkopp, Emma E. Stewart, Lisa L. Arnold, et al.Adam H. Neidert, Belinda K. Haerum, Elizabeth M. Thompson, Saleh Akhras, Gabriel Smith-Winberry, Laura Shefner posted to speciation selection popgen fly by djkt on 2009-10-23 16:29:30 as along with 3 people emptyhb dinnes bpcusack
	Nonlinear Integration of Visual and Haltere Inputs in Fly Neck Motor Neurons [My Copy] J. Neurosci., Vol. 29, No. 42. (21 October 2009), pp. 13097-13105. by Stephen J. Huston, Holger G. Krapp posted to visual recordings motor fly by BBoyButzemann on 2009-10-22 09:01:51 as
	Non-lethal PCR genotyping of single Drosophila. [My Copy] BioTechniques, Vol. 46, No. 4. (April 2009), pp. 312-314. by Gil B. Carvalho, William W. Ja, Seymour Benzer posted to pcr fly by cisevol to the group BergmanLab on 2009-10-17 18:46:15 as along with 1 person daforerog
	Nutrient stress, host plant quality and herbivore performance of a leaf-mining fly on grass [My Copy] Oecologia, Vol. 130, No. 4. (1 February 2002), pp. 594-599. by Luc De Bruyn, Jan Scheirs, Ron Verhagen posted to quality performance nutrient miner herbivore grass fly by kathrynmrobinson on 2009-10-02 13:18:31 as
	Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2473-2477. by Antonio Marco, Charlotte Konikoff, Timothy L. Karr, Sudhir Kumar posted to motif fly expression development by djkt on 2009-09-28 19:28:41 as along with 8 people and 1 group Garamonfok TRHvidsten rdiaz natstreet nuin sebastien_vigneau maximilianh isimpson Jarman Lab
	Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R97. by James Costello, Mehmet Dalkilic, Scott Beason, et al.Jeff Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian Eads, Justen Andrews posted to networks integration integrated_network fly by carlk on 2009-09-23 18:11:30 as along with 8 people and 1 group meanerelk abc623 Borelli bdessailly sotacam kiekyon druvus daveGerrard BergmanLab
	What can you do with 0.1x genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae) [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 382. by David Rasmussen, Mohamed Noor posted to study scuttle scalaris phoridae megaselia genome fly coverage case by dswan on 2009-09-14 11:08:57 as along with 1 person druvus
	Sequence features associated with microRNA strand selection in humans and flies. [My Copy] BMC genomics, Vol. 10, No. 1. (4 September 2009), 413. by Hai Yang Y. Hu, Zheng Yan, Ying Xu, et al.Hao Hu, Corinna Menzel, Yan Hong H. Zhou, Wei Chen, Philipp Khaitovich posted to strands sequence selection microrna human fly by ealloza on 2009-09-07 11:14:11 as along with 4 people and 1 group heliopais cisevol samgj danmaclean microRNA
	Regulation of Ubx Expression by Epigenetic Enhancer Silencing in Response to Ubx Levels and Genetic Variation [My Copy] PLoS Genet, Vol. 5, No. 9. (4 September 2009), e1000633. by Michael A. Crickmore, Vikram Ranade, Richard S. Mann posted to variation fly expression epigenetics enhancer development by djkt on 2009-09-05 16:17:25 as along with 2 people and 2 groups emptyhb cisevol cis-regulatory-evolution BergmanLab
	GenomeRNAi: a database for cell-based RNAi phenotypes. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (12 January 2007), pp. D492-497. by Thomas Horn, Zeynep Arziman, Juerg Berger, Michael Boutros posted to rnai phenotype fly db by guhjy on 2009-08-24 02:49:17 as
	Rapid Evolution of Sex Pheromone-Producing Enzyme Expression in Drosophila [My Copy] PLoS Biol, Vol. 7, No. 8. (4 August 2009), e1000168. by Troy R. Shirangi, Héloïse D. Dufour, Thomas M. Williams, Sean B. Carroll posted to acceleration fly proteins by djkt on 2009-08-04 16:48:55 as along with 2 people and 1 group daveGerrard biomcgary BergmanLab
	Argonaute loading improves the 5' precision of both MicroRNAs and their miRNA strands in flies. [My Copy] Current biology : CB, Vol. 18, No. 2. (22 January 2008), pp. 147-151. by H. Seitz, M. Ghildiyal, P. D. Zamore posted to deep_sequencing fly microrna by heliopais to the group microRNA on 2009-07-29 14:34:14 as along with 1 person valeriehilgers
	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions [My Copy] Genome Biology, Vol. 10, No. 7. (23 July 2009), R80. by Stewart MacArthur, Xiao Y. Li, Jingyi Li, et al.James Brown, Hou C. Chu, Lucy Zeng, Brandi Grondona, Aaron Hechmer, Lisa Simirenko, Soile Keranen, David Knowles, Mark Stapleton, Peter Bickel, Mark Biggin, Michael Eisen posted to chip-chip chromatin fly motif tf by djkt on 2009-07-27 19:01:50 as along with 11 people and 2 groups venancio aalibes fenghezi idonaldson daveGerrard megraw scjparker maximilianh isimpson Stew druvus BergmanLab Bioinformatics - CRUK
	GIF-DB, a WWW database on gene interactions involved in Drosophila melanogaster development. [My Copy] Nucleic acids research, Vol. 25, No. 1. (1 January 1997), pp. 67-71. by B. Jacq, F. Horn, F. Janody, et al.N. Gompel, O. Serralbo, E. Mohr, C. Leroy, B. Bellon, L. Fasano, P. Laurenti, L. Röder posted to databases fly networks by carlk on 2009-07-09 20:48:02 as
	DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions [My Copy] BMC Genomics, Vol. 9, No. 1. (07 October 2008), 461. by Jingkai Yu, Svetlana Pacifico, Guozhen Liu, Russell Finley posted to databases fly interactions networks by carlk on 2009-07-09 20:46:46 as along with 5 people cmor diamantis guhjy pengchy zhqiang
	Incinerator fly ash provokes alteration of redox equilibrium and liberation of arachidonic acid in vitro. [My Copy] Biological chemistry, Vol. 387, No. 10-11. (v 2006), pp. 1421-1428. by S. Fritsch, S. Diabaté, H. F. Krug posted to acid arachidonic equilibrium fly redox by fisherp on 2009-07-09 14:14:04 as
	Feature detection and the hypercomplex property in insects [My Copy] Trends in Neurosciences, Vol. 32, No. 7. (July 2009), pp. 383-391. by Karin Nordström, David C. O'Carroll posted to coding fly motion by bayesian on 2009-07-02 11:30:14 as
	The evolutionary forest algorithm [My Copy] Bioinformatics, Vol. 23, No. 15. (1 August 2007), pp. 1962-1968. by Scotland C. Leman, Marcy K. Uyenoyama, Michael Lavine, Yuguo Chen posted to evolution fly gene_geneology population_genetics by aprasad on 2009-06-29 22:10:27 as along with 2 people djkt ryanraaum
	Biological function of unannotated transcription during the early development of Drosophila melanogaster [My Copy] Nature Genetics, Vol. 38, No. 10. (03 September 2006), pp. 1151-1158. by Robert J. Manak, Sujit Dike, Victor Sementchenko, et al.Philipp Kapranov, Frederic Biemar, Jeff Long, Jill Cheng, Ian Bell, Srinka Ghosh, Antonio Piccolboni, Thomas R. Gingeras posted to development fly gene_expression by roys on 2009-06-29 04:46:12 as along with 11 people and 7 groups ThomasDOtto inesdesantiago daveGerrard GeeSharpMinor emptyhb dpollard neveaire djkt wrowell Stew xingxu BergmanLab Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience Cline_lab
	Coupling of zygotic transcription to mitotic control at the Drosophila mid-blastula transition. [My Copy] Development (Cambridge, England), Vol. 136, No. 12. (June 2009), pp. 2101-2110. by Xuemin Lu, Jennifer M M. Li, Olivier Elemento, Saeed Tavazoie, Eric F F. Wieschaus posted to development fly gene_expression by roys on 2009-06-29 03:14:23 as along with 2 people and 1 group daveGerrard cisevol BergmanLab
	Developmental control of nuclear morphogenesis and anchoring by charleston, identified in a functional genomic screen of Drosophila cellularisation [My Copy] Development, Vol. 133, No. 4. (15 February 2006), pp. 711-723. by Fanny Pilot, Jean-Marc Philippe, Celine Lemmers, Jean-Paul Chauvin, Thomas Lecuit posted to development fly gene_expression by roys on 2009-06-29 03:10:32 as along with 1 person and 1 group wrowell Cline_lab
	KELLER: estimating time-varying interactions between genes [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i128-136. by Le Song, Mladen Kolar, Eric P. Xing posted to dynamics fly regulatory_nw timeseries by roys on 2009-06-29 02:57:28 as along with 7 people and 1 group rdiaz arne yaredo leemond31 tmmurali dswan mstumpf Bioinformatics
	A Network of Conserved Damage Survival Pathways Revealed by a Genomic RNAi Screen [My Copy] PLoS Genet, Vol. 5, No. 6. (19 June 2009), e1000527. by Dashnamoorthy Ravi, Amy M. Wiles, Selvaraj Bhavani, Jianhua Ruan, Philip Leder, Alexander J. R. Bishop posted to dnadamage fly protein_nw species_specific_nw stress yeast by roys on 2009-06-29 01:22:10 as along with 2 people ravidmurthy renatomilani
	Competitive Interactions Between Cells: Death, Growth, and Geography [My Copy] Science, Vol. 324, No. 5935. (26 June 2009), pp. 1679-1682. by Laura A. Johnston posted to cancer cell_populations fly growth by roys on 2009-06-29 00:33:46 as along with 4 people and 1 group leliavski Zephyrus fpattyn jago Neuroblastoma
	A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila [My Copy] Nature, Vol. 448, No. 7150. (12 July 2007), pp. 151-156. by Georg Dietzl, Doris Chen, Frank Schnorrer, et al.Kuan-Chung Su, Yulia Barinova, Michaela Fellner, Beate Gasser, Kaolin Kinsey, Silvia Oppel, Susanne Scheiblauer, Africa Couto, Vincent Marra, Krystyna Keleman, Barry J. Dickson posted to fly rnai tissue_specific_expression by roys on 2009-06-26 05:14:16 as along with 3 people StuartForrest gurprit_raunu emmahe
	Locus specific decoupling of base composition evolution at synonymous sites and introns along the Drosophila melanogaster and D. sechellia lineages [My Copy] Genome Biology and Evolution (25 May 2009) by Bauer, N. D. Singh, M. H. Wright, C. F. Aquadro posted to bias fly by djkt on 2009-06-23 17:57:37 as
	Genome-Wide Identification of Alternative Splice Forms Down-Regulated by Nonsense-Mediated mRNA Decay in <italic>Drosophila</italic> [My Copy] PLoS Genet, Vol. 5, No. 6. (19 June 2009), e1000525. by Kasper D. Hansen, Liana F. Lareau, Marco Blanchette, et al.Richard E. Green, Qi Meng, Jan Rehwinkel, Fabian L. Gallusser, Elisa Izaurralde, Donald C. Rio, Sandrine Dudoit, Steven E. Brenner posted to expression fly rna splicing by djkt on 2009-06-19 16:35:13 as
	Co-regulated transcriptional networks contribute to natural genetic variation in Drosophila sleep. [My Copy] Nature genetics, Vol. 41, No. 3. (22 March 2009), pp. 371-375. by Susan T. Harbison, Mary Anna A. Carbone, Julien F. Ayroles, Eric A. Stone, Richard F. Lyman, Trudy F. Mackay posted to eqtl fly by roys on 2009-06-12 02:34:46 as along with 4 people and 3 groups daveGerrard dpollard daforerog djkt BergmanLab RockmanLab NYU Journal Review
	Strong Evidence for Lineage and Sequence Specificity of Substitution Rates and Patterns in Drosophila [My Copy] Mol Biol Evol, Vol. 26, No. 7. (1 July 2009), pp. 1591-1605. by Nadia D. Singh, Peter F. Arndt, Andrew G. Clark, Charles F. Aquadro posted to bias evolution fly molclock mutation selection by djkt on 2009-06-09 19:09:51 as along with 5 people operon michaelbarton katholt bmajoros benjaminsb
	Pervasive Natural Selection in the Drosophila Genome? [My Copy] PLoS Genetics, Vol. 5, No. 6. (5 June 2009), e1000495. by Guy Sella, Dmitri A. Petrov, Molly Przeworski, Peter Andolfatto posted to fly popgen review selection by djkt on 2009-06-08 17:30:41 as along with 7 people and 1 group timflutre emptyhb jjray ematsen reyez lindseyfallis APRegier Morgan Lab-KSU
	Tsc2 is not a critical target of Akt during normal Drosophila development. [My Copy] Genes & development, Vol. 18, No. 20. (15 October 2004), pp. 2479-2484. by J. Dong, D. Pan posted to akt fly tsc2 by bloomekj on 2009-06-05 07:16:29 as
	Living with lethal PIP3 levels: viability of flies lacking PTEN restored by a PH domain mutation in Akt/PKB. [My Copy] Science (New York, N.Y.), Vol. 295, No. 5562. (15 March 2002), pp. 2088-2091. by H. Stocker, M. Andjelkovic, S. Oldham, et al.M. Laffargue, M. P. Wymann, B. A. Hemmings, E. Hafen posted to akt fly pten by bloomekj on 2009-06-03 02:29:45 as along with 1 person aminaikeno
	PDK1 regulates growth through Akt and S6K in Drosophila. [My Copy] Proc Natl Acad Sci U S A, Vol. 98 (2001), pp. 15020-15025. by F. Rintelen, H. Stocker, G. Thomas, E. Hafen posted to fly pdk1 by bloomekj on 2009-06-02 21:26:13 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	dS6K-regulated cell growth is dPKB/dPI(3)K-independent, but requires dPDK1. [My Copy] Nature cell biology, Vol. 4, No. 3. (March 2002), pp. 251-255. by T. Radimerski, J. Montagne, F. Rintelen, et al.H. Stocker, J. van der Kaay, C. P. Downes, E. Hafen, G. Thomas posted to fly pdk1 s6k size by bloomekj on 2009-06-02 21:25:29 as
	The translational inhibitor 4E-BP is an effector of PI(3)K/Akt signalling and cell growth in Drosophila. [My Copy] Nature cell biology, Vol. 3, No. 6. (June 2001), pp. 596-601. by M. Miron, J. Verdú, P. E. Lachance, M. J. Birnbaum, P. F. Lasko, N. Sonenberg posted to 4e-bp fly pi3k size translation by bloomekj on 2009-06-02 21:21:26 as
	Genetic and biochemical characterization of dTOR, the Drosophila homolog of the target of rapamycin. [My Copy] Genes & development, Vol. 14, No. 21. (1 November 2000), pp. 2689-2694. by S. Oldham, J. Montagne, T. Radimerski, G. Thomas, E. Hafen posted to fly mtor by bloomekj on 2009-06-02 21:19:04 as
	How Are the Sizes of Cells, Organs, and Bodies Controlled? [My Copy] PLoS Biol, Vol. 1, No. 3. (22 December 2003), e86. by Ernst Hafen, Hugo Stocker posted to fly review size by bloomekj on 2009-06-02 21:04:54 as along with 1 person Fournier34
	The minute genes in Drosophila and their molecular functions. [My Copy] Advances in genetics, Vol. 38 (1998), pp. 69-134. by A. Lambertsson posted to fly minute review size translation by bloomekj on 2009-06-02 20:19:53 as
	Coordination of growth and cell division in the Drosophila wing. [My Copy] Cell, Vol. 93, No. 7. (26 June 1998), pp. 1183-1193. by T. P. Neufeld, A. F. de la Cruz, L. A. Johnston, B. A. Edgar posted to fly growth proliferation by bloomekj on 2009-06-02 20:17:55 as
	The three postblastoderm cell cycles of Drosophila embryogenesis are regulated in G2 by string. [My Copy] Cell, Vol. 62, No. 3. (10 August 1990), pp. 469-480. by B. A. Edgar, P. H. O'Farrell posted to fly stringcdc25 by bloomekj on 2009-06-02 20:15:15 as
	Cyclin E controls S phase progression and its down-regulation during Drosophila embryogenesis is required for the arrest of cell proliferation. [My Copy] Cell, Vol. 77, No. 1. (8 April 1994), pp. 107-120. by J. A. Knoblich, K. Sauer, L. Jones, H. Richardson, R. Saint, C. F. Lehner posted to cyclin-e fly proliferation s-phase by bloomekj on 2009-06-02 20:09:37 as
	Distinct modes of cyclin E/cdc2c kinase regulation and S-phase control in mitotic and endoreduplication cycles of Drosophila embryogenesis. [My Copy] Genes & development, Vol. 9, No. 11. (1 June 1995), pp. 1327-1339. by K. Sauer, J. A. Knoblich, H. Richardson, C. F. Lehner posted to cyclin-e fly proliferation s-phase by bloomekj on 2009-06-02 20:07:58 as
	Rescue of a Drosophila NF1 mutant phenotype by protein kinase A. [My Copy] Science (New York, N.Y.), Vol. 276, No. 5313. (2 May 1997), pp. 791-794. by I. The, G. E. Hannigan, G. S. Cowley, et al.S. Reginald, Y. Zhong, J. F. Gusella, I. K. Hariharan, A. Bernards posted to body-size fly nf1 pka by bloomekj on 2009-06-02 20:04:06 as
	gigas, a Drosophila homolog of tuberous sclerosis gene product-2, regulates the cell cycle. [My Copy] Cell, Vol. 96, No. 4. (19 February 1999), pp. 529-539. by N. Ito, G. M. Rubin posted to fly proliferation size tsc by bloomekj on 2009-06-02 20:01:55 as

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evolution	28
expression	25
size	20
development	18
coding	16
pten	12
network	11
popgen	11
selection	11
compensation	10
dosage	10
proliferation	10
visual	10
x-chromosome	10
gene_expression	9
networks	9
tf	9
yeast	9
drosophila	8
genome	8
human	8
cancer	7
motion	7
akt	6
conservation	6
diet	6
information_theory	6
olfactory	6
restriction	6
sex	6
variation	6
atoh1	5
atonal	5
bias	5
differentiation	5
disease	5
math1	5
mirna	5
proteins	5
qtl	5
rna	5
transcription-factor	5
worm	5
adaptation	4
aging	4
bio	4
chromatin	4
duplication	4
efficient_coding	4
electrophysiology	4
eqtl	4
genetic	4
growth	4
insulin	4
lifespan	4
microrna	4
myc	4
neural_coding	4
pcmanuscript	4
recombination	4
review	4
spatial	4
stochastic	4
tissue_specific_expression	4
annotation	3
body-size	3
co2	3
comparative	3
comparative_genomics	3
databases	3
db	3
enhancer	3
epigenetics	3
eye	3
fruit	3
gene-expression	3
genetics	3
genomics	3
host	3
information	3
inhibition	3
mammals	3
model	3
molclock	3
motif	3
mouse	3
organ-size	3
pi3k	3
ppi	3
prediction	3
protein	3
ras	3
regulatory_nw	3
robotics	3
s6k	3
sensing	3
snps	3
nonlinear	2
pdk1	2
podocyte	2

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