Tag folding [more than 800 articles] Export

Recent papers classified by the tag folding.

	Free energy landscape of protein folding in water: Explicit vs. implicit solvent [My Copy] Proteins: Structure, Function, and Genetics, Vol. 53, No. 2. (2003), pp. 148-161. by Ruhong Zhou posted to vs solvent protein model in implicit folding explicit by chemrahul82 on 2009-11-09 01:30:40 as along with 5 people flbarroso choonpeng RamuAnandakrishnan onufriev msuarezdiez
	NMR spectroscopy brings invisible protein states into focus [My Copy] Nature Chemical Biology, Vol. 5, No. 11. (19 October 2009), pp. 808-814. by Andrew J. Baldwin, Lewis E. Kay posted to md folding by flbarroso on 2009-11-04 17:28:19 as along with 1 person paulschlesinger
	Direct observation of ultrafast folding and denatured state dynamics in single protein molecules [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 44. (3 November 2009), pp. 18569-18574. by Hannes Neuweiler, Christopher M. Johnson, Alan R. Fersht posted to protein folding by zwang on 2009-11-04 09:16:23 as along with 2 people and 1 group quanwang samjlord moernerlab
	Does Retinotopy Influence Cortical Folding in Primate Visual Cortex? [My Copy] J. Neurosci., Vol. 29, No. 36. (9 September 2009), pp. 11149-11152. by Reza Rajimehr, Roger B. H. Tootell posted to visual_cortex gyri folding by ybysk on 2009-11-04 07:39:25 as along with 1 person PaperCollector
	Principles that govern the folding of protein chains. [My Copy] Science (New York, N.Y.), Vol. 181, No. 96. (20 July 1973), pp. 223-230. by C. B. Anfinsen posted to folding analysis by dfdong on 2009-11-04 02:38:22 as along with 7 people rsaito cactus karbak thaliana fjc1 rabio granujilla
	Refolding of the integral membrane protein light-harvesting complex II monitored by pulse EPR [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 44. (3 November 2009), pp. 18485-18490. by Christoph Dockter, Aleksei Volkov, Christian Bauer, et al.Yevhen Polyhach, ZoÃ© Joly-Lopez, Gunnar Jeschke, Harald Paulsen posted to folding by carlosjavierna on 2009-11-03 23:27:21 as along with 1 person jasonforse
	Smaller and Faster: The 20-Residue Trp-Cage Protein Folds in 4 μs [My Copy] Journal of the American Chemical Society, Vol. 124, No. 44. (1 November 2002), pp. 12952-12953. by Linlin Qiu, Suzette A. Pabit, Adrian E. Roitberg, Stephen J. Hagen posted to trp-cage molecular-dynamics molecular model folding dynamics by zfekete on 2009-11-03 10:06:53 as
	All-Atom Structure Prediction and Folding Simulations of a Stable Protein [My Copy] Journal of the American Chemical Society, Vol. 124, No. 38. (1 September 2002), pp. 11258-11259. by Carlos Simmerling, Bentley Strockbine, Adrian E. Roitberg posted to molecular-dynamics molecular modeling folding dynamics by zfekete on 2009-11-03 10:02:48 as
	Simulating Temperature Jumps for Protein Folding [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 5. (1 February 2008), pp. 1525-1532. by Seonah Kim, Adrian E. Roitberg posted to protein molecular-dynamics molecular modeling folding by zfekete on 2009-11-03 10:00:45 as along with 1 person allmensch
	Converging concepts of protein folding in vitro and in vivo [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 6. (03 June 2009), pp. 574-581. by F. Ulrich Hartl, Manajit Hayer-Hartl posted to folding becker by bratwurst on 2009-11-02 17:54:07 as along with 6 people skywalkerus02 siggi84 scampos melo_mcr reyez RamuAnandakrishnan
	Why similar protein sequences encode similar three-dimensional structures? [My Copy] Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta) by Szymon Kaczanowski, Piotr Zielenkiewicz posted to protein modeling folding by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-10-28 19:53:29 as
	THEORY OF PROTEIN FOLDING: The Energy Landscape Perspective [My Copy] Annual Review of Physical Chemistry, Vol. 48, No. 1. (1997), pp. 545-600. by José N. Onuchic, Zaida L. Schulten, Peter G. Wolynes posted to protein onuch99pdf landscapes folding energy by paulschlesinger on 2009-10-27 19:43:12 as along with 3 people newton1234 warlock6x3 rph
	Thin-walled structures as impact energy absorbers [My Copy] Thin-Walled Structures, Vol. 41, No. 2-3. (February 2003), pp. 91-107. by W. Abramowicz posted to tetrapak shells folding buckling by umbertoperego on 2009-10-27 15:21:11 as
	Energy absorption of metallic cylindrical shells with induced non-axisymmetric folding patterns [My Copy] International Journal of Impact Engineering, Vol. 30, No. 8-9. (October 2004), pp. 1209-1223. by J. Marsolek, H. Reimerdes posted to tetrapak shells folding buckling by umbertoperego on 2009-10-27 15:19:05 as
	Deformation-induced folding systems in thin-walled monolithic hexagonal metallic honeycomb [My Copy] International Journal of Solids and Structures, Vol. 41, No. 11-12. (June 2004), pp. 3353-3377. by D. Mohr, M. Doyoyo posted to tetrapak shells folding by umbertoperego on 2009-10-27 14:46:40 as
	Fast protein folding kinetics [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 22. (28 October 2003), pp. 12678-12682. by Jack Schonbrun, Ken A. Dill posted to folding by rph on 2009-10-26 17:26:34 as
	The Ultimate Speed Limit to Protein Folding Is Conformational Searching [My Copy] Journal of the American Chemical Society, Vol. 129, No. 39. (1 October 2007), pp. 11920-11927. by Kingshuk Ghosh, S. Banu Ozkan, Ken A. Dill posted to folding by rph on 2009-10-26 17:10:11 as along with 2 people gisle karmarae
	Queueing phase transition: theory of translation. [My Copy] Physical review letters, Vol. 102, No. 19. (15 May 2009) by M. Carmen Romano, Marco Thiel, Ian Stansfield, Celso Grebogi posted to transition slow model folding codons by saunders on 2009-10-26 12:14:50 as
	On the critical -foliated formations of finite groups [My Copy] Discrete Mathematics and Applications, Vol. 16, No. 3. (2006), pp. 289-298. by Sorokina, M.M., Korpacheva, M.A. posted to nnet folding finite_groups by beete on 2009-10-23 11:10:16 as
	Backbone dynamics of TFE-induced native-like fold of region 4 of Escherichia coli RNA polymerase sigma<SUP><FONT SIZE='-1'>70</FONT></SUP> subunit [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Piotr Kaczka, Agnieszka Polkowska-Nowakowska, Krystyna Bolewska, Igor Zhukov, Jaros&lstrok;aw Pozna&nacute;ski, Kazimierz L. Wierzchowski posted to folding by carlosjavierna on 2009-10-23 08:37:31 as
	Mechanism of formation of the C-terminal beta-hairpin of the B3 domain of the immunoglobulin binding protein G from <I>Streptococcus</I>. III. Dynamics of long-range hydrophobic interactions [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Agnieszka Lewandowska, Stanis&lstrok;aw O&lstrok;dziej, Adam Liwo, Harold A. Scheraga posted to folding by carlosjavierna on 2009-10-23 08:23:03 as
	Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues [My Copy] Nature Structural & Molecular Biology, Vol. 3, No. 2. (01 February 1996), pp. 193-205. by Sepideh Khorasanizadeh, Iain D. Peters, Heinrich Roder posted to ubiquitin proteins kinetics folding by edws on 2009-10-23 04:23:19 as
	Kinetics of unfolding and refolding of proteins 1I. Mathematical analysis [My Copy] Journal of Molecular Biology*, Vol. 73, No. 2. (January 1973), pp. 145-163. by A. Ikai posted to proteins kinetics folding by edws on 2009-10-23 04:22:42 as
	Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation. [My Copy] FEBS letters, Vol. 462, No. 3. (3 December 1999), pp. 387-391. by A. A. Komar, T. Lesnik, C. Reiss posted to usage synonymous ribosome folding codon by saunders on 2009-10-22 15:16:26 as
	RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble [My Copy] RNA, Vol. 11, No. 8. (August 2005), pp. 1157-1166. by Y. E. Ding, Chi Y. U. Chan, Charles E. Lawrence posted to folding by RamuAnandakrishnan on 2009-10-22 14:49:16 as
	The folding, stability and conformational dynamics of [small beta]-barrel fluorescent proteins [My Copy] Chem. Soc. Rev., Vol. 38, No. 10. (2009), pp. 2951-2965. by Shang-Te D. Hsu, Georg Blaser, Sophie E. Jackson posted to folding by flbarroso on 2009-10-19 15:59:25 as
	Exploring the folding energy landscape of a series of designed consensus tetratricopeptide repeat proteins [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 41. (13 October 2009), pp. 17383-17388. by Yalda Javadi, Ewan R. G. Main posted to folding by carlosjavierna on 2009-10-18 18:05:51 as along with 1 person pansapiens
	Differentiation of lipid-associating helices by use of three-dimensional molecular hydrophobicity potential calculations. [My Copy] Journal of Biological Chemistry, Vol. 266, No. 24. (25 August 1991), pp. 16120-16127. by R. Brasseur posted to solvation parameters folding energy_function by melo_mcr on 2009-10-17 21:46:34 as
	Multidimensional adaptive umbrella sampling: Applications to main chain and side chain peptide conformations [My Copy] Journal of Computational Chemistry, Vol. 18, No. 12. (1997), pp. 1450-1462. by Christian Bartels, Martin Karplus posted to folding_algorithm folding by melo_mcr on 2009-10-17 21:15:26 as along with 1 person Diego_Prada
	Solvent accessible surface area approximations for rapid and accurate protein structure prediction [My Copy] Journal of Molecular Modeling, Vol. 15, No. 9. (1 September 2009), pp. 1093-1108. by Elizabeth Durham, Brent Dorr, Nils Woetzel, René Staritzbichler, Jens Meiler posted to protein_surface folding by melo_mcr on 2009-10-17 21:05:28 as along with 1 person and 1 group sobolevnrm baker-group
	Folding Langmuir Monolayers [My Copy] Physical Review Letters, Vol. 89, No. 14. (Sep 2002), 146107. by Weixing Lu, Charles M. Knobler, Robijn F. Bruinsma, Michael Twardos, Michael Dennin posted to monolayer langmuir knobler folding dennin collapse by tboats on 2009-10-16 00:44:47 as
	Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome [My Copy] Science, Vol. 326, No. 5950. (9 October 2009), pp. 289-293. by Erez Lieberman-Aiden, Nynke L. van Berkum, Louise Williams, et al.Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R. Lajoie, Peter J. Sabo, Michael O. Dorschner, Richard Sandstrom, Bradley Bernstein, M. A. Bender, Mark Groudine, Andreas Gnirke, John Stamatoyannopoulos, Leonid A. Mirny, Eric S. Lander, Job Dekker posted to interaction genome folding by zwang on 2009-10-14 09:35:49 as along with 29 people and 3 groups psique qayub chvlyl TorstenWaldminghaus kintoki Garamonfok inesdesantiago NickFurnham DrRichardBadge roys rdiaz daveGerrard colinveal frohike nrk891 timflutre afenley kshameer polivares mgatmedsci diamantis flbarroso jdoconnell fenghezi daforerog bpcusack gjuggler gdb gbloeb JLab BergmanLab Journal picks
	An experimental and computational study of laminated paperboard creasing and folding [My Copy] International Journal of Solids and Structures (25 August 2009) by L. A. A. Beex, R. H. J. Peerlings posted to tetrapak paperboard folding delamination crease by umbertoperego on 2009-10-13 08:56:23 as
	The equilibrium partition function and base pair binding probabilities for RNA secondary structure. [My Copy] Biopolymers, Vol. 29, No. 6-7. (n 1990), pp. 1105-1119. by J. S. McCaskill posted to vienna rna folding by saunders on 2009-10-12 10:45:48 as along with 9 people and 3 groups NicholasErho rb_india ellarond evaf marcius arcticrasta condon Hosna Kiarostami beta BioinfoCIPF SGU-CIPF
	Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. [My Copy] Nucleic acids research, Vol. 9, No. 1. (10 January 1981), pp. 133-148. by M. Zuker, P. Stiegler posted to vienna rna minimum free folding energy by saunders on 2009-10-12 10:43:02 as along with 10 people and 2 groups NicholasErho agrobledo gzm55 heliopais evaf marcius arcticrasta mtagaya Hosna guxiyou BioinfoCIPF SGU-CIPF
	High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (9 October 2009), e1000528. by Noriaki Okimoto, Noriyuki Futatsugi, Hideyoshi Fuji, et al.Atsushi Suenaga, Gentaro Morimoto, Ryoko Yanai, Yousuke Ohno, Tetsu Narumi, Makoto Taiji posted to microphysics folding design by kentsis on 2009-10-11 14:30:18 as along with 5 people and 1 group ibuch klexa skywalkerus02 reyez barry McCammon
	Deciphering the structural basis that guides the oxidative folding of leech-derived tryptase inhibitor [My Copy] Journal of Biological Chemistry (9 October 2009) by David Pantoja-Uceda, Joan L. Arolas, Francesc X. Aviles, Jorge Santoro, Salvador Ventura, Christian P. Sommerhoff posted to folding disulfide_bonds by carlosjavierna on 2009-10-10 20:13:18 as
	Understanding folding and design: replica-exchange simulations of "Trp-cage" miniproteins. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 13. (24 June 2003), pp. 7587-7592. by Jed W. Pitera, William Swope posted to trp-cage swope-william replica-exchange-molecular-dynamics pitera-jed-w folding by carlosjavierna on 2009-10-09 17:57:37 as along with 1 person onufriev
	Folding Units Govern the Cytochrome c Alkaline Transition [My Copy] Journal of Molecular Biology, Vol. 331, No. 1. (01 August 2003), pp. 37-43. by L. Hoang posted to folding cytochrome-c by kjell on 2009-10-02 22:41:45 as along with 2 people linkj2 dsmueller
	Brain Size and Folding of the Human Cerebral Cortex [My Copy] Cereb. Cortex, Vol. 18, No. 10. (1 October 2008), pp. 2352-2357. by Roberto Toro, Michel Perron, Bruce Pike, et al.Louis Richer, Suzanne Veillette, Zdenka Pausova, Tomas Paus posted to folding development cortex brain by xgrg on 2009-10-01 10:48:38 as along with 2 people jrw Biomedyknight
	Protein Folding [My Copy] Annual Review of Biochemistry, Vol. 50, No. 1. (1981), pp. 497-532. by M. G. Rossmann, P. Argos posted to folding by qw4054 on 2009-09-29 18:42:01 as along with 1 person toerst
	Predicting the Effect of a Point Mutation on a Protein Fold: The Villin and Advillin Headpieces and Their Pro62Ala Mutants [My Copy] Journal of Molecular Biology, Vol. 375, No. 2. (11 January 2008), pp. 460-470. by Stefano Piana, Alessandro Laio, Fabrizio Marinelli, et al.Marleen Van Troys, David Bourry, Christophe Ampe, José C. Martins posted to protein folding by paddydu on 2009-09-29 17:29:54 as along with 2 people and 1 group A_Coletta_Thesis paulschlesinger Structural Biology Group TorVergata
	A Kinetic Model of Trp-Cage Folding from Multiple Biased Molecular Dynamics Simulations [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (7 August 2009), e1000452. by Fabrizio Marinelli, Fabio Pietrucci, Alessandro Laio, Stefano Piana posted to protein folding by paddydu on 2009-09-29 17:26:52 as along with 2 people Diego_Prada fabiopietrucci
	Fluorescence Microscopy Imaging of Giant Folding in a Catanionic Monolayer [My Copy] Langmuir, Vol. 25, No. 9. (5 May 2009), pp. 5006-5011. by Joseph D. Coppock, Kapilanjan Krishan, Michael Dennin, Brian G. Moore posted to sds monolayer folding dodab dennin collapse by tboats on 2009-09-28 21:25:48 as
	One-Dimensional Barrier-Preserving Free-Energy Projections of a β-sheet Miniprotein: New Insights into the Folding Process [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 29. (1 July 2008), pp. 8701-8714. by Sergei V. Krivov, Stefanie Muff, Amedeo Caflisch, Martin Karplus posted to profile md landscape folding by ruvido on 2009-09-24 14:26:46 as
	Protein-peptide interactions adopt the same structural motifs as monomeric protein folds. [My Copy] Structure (London, England : 1993), Vol. 17, No. 8. (12 August 2009), pp. 1128-1136. by Peter Vanhee, Francois Stricher, Lies Baeten, et al.Erik Verschueren, Tom Lenaerts, Luis Serrano, Frederic Rousseau, Joost Schymkowitz posted to scissors ppi peptides folding 2009 by higueruelo on 2009-09-22 19:18:03 as
	Restriction versus guidance in protein structure prediction [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 36. (8 September 2009), pp. 15302-15307. by Joseph A. Hegler, Joachim LÃ¤tzer, Amarda Shehu, Cecilia Clementi, Peter G. Wolynes posted to folding by carlosjavierna on 2009-09-22 05:21:33 as along with 2 people mkotlyar zwang
	Folding energy landscape of cytochrome cb562 [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 19. (12 May 2009), pp. 7834-7839. by Tetsunari Kimura, Jennifer C. Lee, Harry B. Gray, Jay R. Winkler posted to robust protein folding by amishp on 2009-09-21 23:27:23 as
	Cellular mechanisms of membrane protein folding [My Copy] Nat Struct Mol Biol, Vol. 16, No. 16. (03 June 2009), pp. 606-612. by William R. Skach posted to skach09pdf protein membrane mechanism folding by paulschlesinger on 2009-09-21 18:13:26 as along with 2 people skywalkerus02 siggi84
	Detecting folding intermediates of a protein as it passes through the bacterial translocation channel. [My Copy] Cell, Vol. 138, No. 6. (18 September 2009), pp. 1164-1173. by Hiroshi Kadokura, Jon Beckwith posted to secretion protein folding by mmourez on 2009-09-21 14:02:35 as

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protein	407
rna	179
biophysics	88
structure	79
review	78
md	49
protein_structure	42
membrane	40
modeling	34
bioinformatics	33
electrostatics	31
kinetics	31
evolution	30
prediction	30
binding	29
nmr	28
peptide	25
model	24
simulation	24
potential	23
molecular_dynamics	22
proteins	22
cytochrome-c	21
dna	19
dynamics	18
landscape	17
energy	16
stability	16
computational_biology	15
foce_field	15
groel	15
molecular	15
coarse-graining	14
contact	14
entropy	14
experiment	14
free-energy	14
microphysics	14
theory	14
co-translation	13
ribozyme	13
transmembrane	13
design	12
modelling	12
residue-residue	12
secondary_structure	12
transition	12
unfolded	12
conformation	11
cytochrome	11
lattice	11
secondary-structure	11
bio_systems	10
chaperonin	10
cyt-c-folding	10
denatured	10
pathway	10
tetrahymena	10
topology	10
crowding	9
fret	9
function	9
helix	9
hydrophobicity	9
mc	9
metadynamics	9
protein_folding	9
pseudoknots	9
ribosome	9
alfa-lactalbumin	8
amyloid	8
casp	8
casp6	8
cotranslation	8
exchange	8
hp	8
interaction	8
lattice_models	8
ncrna	8
protein-protein	8
2009	7
bc800	7
cecconi	7
cgreview	7
hpmodel	7
molecular-dynamics	7
network	7
protein_surface	7
qualifier	7
rate	7
sampling	7
sequence	7
statistical_potential	7
supramolecular	7
algorithms	6
alpha-helix	6
chaperone	6
flexibility	6
protein_domains	6
secondary	6

Tag folding [more than 800 articles] Export

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