Tag folding [more than 800 articles] Export

Recent papers classified by the tag folding.

	An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem. [My Copy] BMC bioinformatics, Vol. 6, No. 1. (2005) by Alena Shmygelska, Holger H. Hoos posted to proteins polynomial_time folding ant_colony_optimisation algorithm by zfekete on 2009-11-21 15:39:18 as along with 1 person dinos66
	Minimized protein structures: a little goes a long way. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 19. (16 September 1997), pp. 10010-10011. by M. N. Nedwidek, M. H. Hecht posted to proteins protein_structures mini-peptides folding by zfekete on 2009-11-21 15:37:04 as along with 1 person and 2 groups sangeetha Bioinformatics insilicodrug
	Cotranslational processing mechanisms: towards a dynamic 3D model. [My Copy] Trends in biochemical sciences, Vol. 34, No. 8. (30 August 2009), pp. 417-426. by Carmela Giglione, Sonia Fieulaine, Thierry Meinnel posted to ribosome rac gartmann folding by bratwurst on 2009-11-19 16:28:40 as
	Dual folding pathways of an alpha/beta protein from all-atom ab initio folding simulations. [My Copy] The Journal of chemical physics, Vol. 131, No. 16. (28 October 2009) by Hongxing Lei, Zhi-Xiang X. Wang, Chun Wu, Yong Duan posted to protein_structure pathways folding energy_function all_atom ab_initio by melo_mcr on 2009-11-18 12:58:16 as
	Thermodynamics and kinetics of protein folding under confinement [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20233-20238. by Jeetain Mittal, Robert B. Best posted to rate molecular folding crowding by saunders on 2009-11-17 14:53:30 as along with 2 people cactus itmeson
	Structure of bacteriophage T4 lysozyme refined at 1.7 p resolution [My Copy] Journal of Molecular Biology, Vol. 193, No. 1. (05 January 1987), pp. 189-199. by L. Weaver, B. Matthews posted to t4 structure protein lysozyme folding crystal by ramalldf on 2009-11-17 02:19:00 as
	Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 39. (25 September 2007), pp. 15230-15235. by Isabella Daidone, Martin B. Ulmschneider, Alfredo Di Nola, Andrea Amadei, Jeremy C. Smith posted to peptide md folding dehydrate by qshao on 2009-11-16 21:51:35 as along with 4 people jjurban barmak7282 choonpeng onufriev
	Principles of protein folding--a perspective from simple exact models. [My Copy] Protein science : a publication of the Protein Society, Vol. 4, No. 4. (1 April 1995), pp. 561-602. by K. A. Dill, S. Bromberg, K. Yue, et al.K. M. Fiebig, D. P. Yee, P. D. Thomas, H. S. Chan posted to folding by carlosjavierna on 2009-11-13 07:31:17 as along with 2 people sikorski iantunbridge
	Designing amino acid sequences to fold with good hydrophobic cores. [My Copy] Protein engineering, Vol. 8, No. 12. (December 1995), pp. 1205-1213. by S. Sun, R. Brem, H. S. Chan, K. A. Dill posted to folding by carlosjavierna on 2009-11-13 07:16:22 as
	Conformational Dynamics and Ensembles in Protein Folding [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 36, No. 1. (2007), pp. 395-412. by Victor Muñoz posted to review folding by dfdong on 2009-11-12 09:31:37 as
	From the first protein structures to our current knowledge of protein folding: delights and scepticisms [My Copy] Nature Reviews Molecular Cell Biology, Vol. 9, No. 8. (25 June 2008), pp. 650-654. by Alan R. Fersht posted to review folding by dfdong on 2009-11-12 09:27:42 as along with 5 people aalibes dullhunk paulschlesinger chad_davis melting
	The Protein Folding Problem [My Copy] Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 289-316. by Ken A. Dill, S. Banu Ozkan, M. Scott Shell, Thomas R. Weikl posted to review folding by dfdong on 2009-11-12 09:26:13 as along with 6 people siggi84 qluo doktornoe flbarroso zwang dsekaran
	Simultaneous prediction of protein folding and docking at high resolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18978-18983. by Rhiju Das, Ingemar AndrÃ©, Yang Shen, et al.Yibing Wu, Alexander Lemak, Sonal Bansal, Cheryl H. Arrowsmith, Thomas Szyperski, David Baker posted to unstructured simulation rosetta folding docking das09pdf binding based by paulschlesinger on 2009-11-12 00:10:36 as along with 4 people ahmetbakan apaydin ibuch zwang
	How to mark off paths on the protein energy landscape [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18879-18880. by Martin Gruebele posted to protein folding energy_landscape by apaydin on 2009-11-11 16:26:43 as
	Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 19011-19016. by Frank NoÃ©, Christof SchÃ¼tte, Eric Vanden-Eijnden, Lothar Reich, Thomas R. Weikl posted to protein folding by apaydin on 2009-11-11 16:18:08 as along with 1 person Diego_Prada
	Cotranslational Folding of Proteins [My Copy] Biochemistry (Moscow), Vol. 65, No. 12. (1 December 2000), pp. 1380-1384. by M. A. Basharov posted to timing protein folding co-translation by saunders on 2009-11-11 13:11:04 as
	Protein structure prediction via combinatorial assembly of sub-structural units [My Copy] Bioinformatics, Vol. 19, No. suppl_1. (3 July 2003), pp. i158-168. by Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson posted to segment predict folding by dfdong on 2009-11-11 09:05:22 as along with 1 person chad_davis
	Automated analysis of interatomic contacts in proteins [My Copy] Bioinformatics, Vol. 15, No. 4. (1 April 1999), pp. 327-332. by V. Sobolev, A. Sorokine, J. Prilusky, E. E. Abola, M. Edelman posted to segment folding analysis by dfdong on 2009-11-11 09:04:45 as along with 3 people bicko nickolay massivemayhem
	Finding of residues crucial for supersecondary structure formation [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18996-19000. by Alexander E. Kister, Israel Gelfand posted to predict folding by dfdong on 2009-11-11 07:10:57 as along with 1 person zwang
	Salt Dependence of an α-Helical Peptide Folding Energy Landscapes [My Copy] Biochemistry, Vol. 48, No. 45. (17 November 2009), pp. 10818-10826. by Kan Xiong, Eliana K. Asciutto, Jeffry D. Madura, Sanford A. Asher posted to folding by carlosjavierna on 2009-11-10 15:59:14 as
	An expanding arsenal of experimental methods yields an explosion of insights into protein folding mechanisms. [My Copy] Nature structural & molecular biology, Vol. 16, No. 6. (03 June 2009), pp. 582-588. by Alice I. Bartlett, Sheena E. Radford posted to techniques protein global folding experimental by saunders on 2009-11-10 14:02:05 as along with 3 people skywalkerus02 siggi84 melo_mcr
	The Levinthal paradox: yesterday and today. [My Copy] Folding & design, Vol. 2, No. 4. (1997) by M. Karplus posted to structure restriction nonrandom levinthal folding by saunders on 2009-11-10 13:58:42 as along with 1 person faccioli
	Protein thermodynamic structure. [My Copy] IUBMB life, Vol. 61, No. 6. (June 2009), pp. 600-606. by Qinyi Zhao posted to thermodynamic hypothesis global folding by saunders on 2009-11-10 13:54:04 as along with 1 person skywalkerus02
	Mechanism of ribosome assisted protein folding: a new insight into rRNA functions. [My Copy] Biochemical and biophysical research communications, Vol. 384, No. 2. (26 June 2009), pp. 137-140. by Dibyendu Samanta, Anindita Das, Arpita Bhattacharya, Arunima Basu, Debasis Das, Chanchal DasGupta posted to rrna ribosome function folding co-translation by saunders on 2009-11-10 13:52:42 as
	Structural determinants of protein folding. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 66, No. 14. (1 July 2009), pp. 2341-2361. by Tse Siang S. Kang, R. Manjunatha Kini posted to structure review protein function folding by saunders on 2009-11-10 13:51:48 as along with 1 person skywalkerus02
	Structural dynamics and folding of beta-lactoglobulin probed by heteronuclear NMR. [My Copy] Biochimica et biophysica acta, Vol. 1790, No. 6. (June 2009), pp. 527-537. by Kazumasa Sakurai, Tsuyoshi Konuma, Masanori Yagi, Yuji Goto posted to protein nmr folding dynamics by saunders on 2009-11-10 13:49:26 as
	The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins. [My Copy] Nature structural & molecular biology, Vol. 16, No. 6. (June 2009), pp. 589-597. by Günter Kramer, Daniel Boehringer, Nenad Ban, Bernd Bukau posted to role ribosome review protein folding co-translational by saunders on 2009-11-10 13:10:28 as along with 4 people siggi84 bratwurst redondoself reyez
	Free energy landscape of protein folding in water: Explicit vs. implicit solvent [My Copy] Proteins: Structure, Function, and Genetics, Vol. 53, No. 2. (2003), pp. 148-161. by Ruhong Zhou posted to vs solvent protein model in implicit folding explicit by chemrahul82 on 2009-11-09 01:30:40 as along with 5 people flbarroso choonpeng RamuAnandakrishnan onufriev msuarezdiez
	NMR spectroscopy brings invisible protein states into focus [My Copy] Nature Chemical Biology, Vol. 5, No. 11. (19 October 2009), pp. 808-814. by Andrew J. Baldwin, Lewis E. Kay posted to md folding by flbarroso on 2009-11-04 17:28:19 as along with 1 person paulschlesinger
	Direct observation of ultrafast folding and denatured state dynamics in single protein molecules [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 44. (3 November 2009), pp. 18569-18574. by Hannes Neuweiler, Christopher M. Johnson, Alan R. Fersht posted to protein folding by zwang on 2009-11-04 09:16:23 as along with 2 people and 1 group quanwang samjlord moernerlab
	Does Retinotopy Influence Cortical Folding in Primate Visual Cortex? [My Copy] J. Neurosci., Vol. 29, No. 36. (9 September 2009), pp. 11149-11152. by Reza Rajimehr, Roger B. H. Tootell posted to visual_cortex gyri folding by ybysk on 2009-11-04 07:39:25 as along with 1 person PaperCollector
	Principles that govern the folding of protein chains. [My Copy] Science (New York, N.Y.), Vol. 181, No. 96. (20 July 1973), pp. 223-230. by C. B. Anfinsen posted to folding analysis by dfdong on 2009-11-04 02:38:22 as along with 7 people rsaito cactus karbak thaliana fjc1 rabio granujilla
	Refolding of the integral membrane protein light-harvesting complex II monitored by pulse EPR [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 44. (3 November 2009), pp. 18485-18490. by Christoph Dockter, Aleksei Volkov, Christian Bauer, et al.Yevhen Polyhach, ZoÃ© Joly-Lopez, Gunnar Jeschke, Harald Paulsen posted to folding by carlosjavierna on 2009-11-03 23:27:21 as along with 1 person jasonforse
	Smaller and Faster: The 20-Residue Trp-Cage Protein Folds in 4 μs [My Copy] Journal of the American Chemical Society, Vol. 124, No. 44. (1 November 2002), pp. 12952-12953. by Linlin Qiu, Suzette A. Pabit, Adrian E. Roitberg, Stephen J. Hagen posted to trp-cage molecular-dynamics molecular model folding dynamics by zfekete on 2009-11-03 10:06:53 as
	All-Atom Structure Prediction and Folding Simulations of a Stable Protein [My Copy] Journal of the American Chemical Society, Vol. 124, No. 38. (1 September 2002), pp. 11258-11259. by Carlos Simmerling, Bentley Strockbine, Adrian E. Roitberg posted to molecular-dynamics molecular modeling folding dynamics by zfekete on 2009-11-03 10:02:48 as
	Simulating Temperature Jumps for Protein Folding [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 5. (1 February 2008), pp. 1525-1532. by Seonah Kim, Adrian E. Roitberg posted to protein molecular-dynamics molecular modeling folding by zfekete on 2009-11-03 10:00:45 as along with 1 person allmensch
	Converging concepts of protein folding in vitro and in vivo [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 6. (03 June 2009), pp. 574-581. by F. Ulrich Hartl, Manajit Hayer-Hartl posted to folding becker by bratwurst on 2009-11-02 17:54:07 as along with 6 people skywalkerus02 siggi84 scampos melo_mcr reyez RamuAnandakrishnan
	Why similar protein sequences encode similar three-dimensional structures? [My Copy] Theoretical Chemistry Accounts: Theory, Computation, and Modeling (Theoretica Chimica Acta) by Szymon Kaczanowski, Piotr Zielenkiewicz posted to protein modeling folding by A_Coletta_Thesis to the group Structural Biology Group TorVergata on 2009-10-28 19:53:29 as
	THEORY OF PROTEIN FOLDING: The Energy Landscape Perspective [My Copy] Annual Review of Physical Chemistry, Vol. 48, No. 1. (1997), pp. 545-600. by José N. Onuchic, Zaida L. Schulten, Peter G. Wolynes posted to protein onuch99pdf landscapes folding energy by paulschlesinger on 2009-10-27 19:43:12 as along with 3 people newton1234 warlock6x3 rph
	Thin-walled structures as impact energy absorbers [My Copy] Thin-Walled Structures, Vol. 41, No. 2-3. (February 2003), pp. 91-107. by W. Abramowicz posted to tetrapak shells folding buckling by umbertoperego on 2009-10-27 15:21:11 as
	Energy absorption of metallic cylindrical shells with induced non-axisymmetric folding patterns [My Copy] International Journal of Impact Engineering, Vol. 30, No. 8-9. (October 2004), pp. 1209-1223. by J. Marsolek, H. Reimerdes posted to tetrapak shells folding buckling by umbertoperego on 2009-10-27 15:19:05 as
	Deformation-induced folding systems in thin-walled monolithic hexagonal metallic honeycomb [My Copy] International Journal of Solids and Structures, Vol. 41, No. 11-12. (June 2004), pp. 3353-3377. by D. Mohr, M. Doyoyo posted to tetrapak shells folding by umbertoperego on 2009-10-27 14:46:40 as
	Fast protein folding kinetics [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 22. (28 October 2003), pp. 12678-12682. by Jack Schonbrun, Ken A. Dill posted to folding by rph on 2009-10-26 17:26:34 as
	The Ultimate Speed Limit to Protein Folding Is Conformational Searching [My Copy] Journal of the American Chemical Society, Vol. 129, No. 39. (1 October 2007), pp. 11920-11927. by Kingshuk Ghosh, S. Banu Ozkan, Ken A. Dill posted to folding by rph on 2009-10-26 17:10:11 as along with 2 people gisle karmarae
	Queueing phase transition: theory of translation. [My Copy] Physical review letters, Vol. 102, No. 19. (15 May 2009) by M. Carmen Romano, Marco Thiel, Ian Stansfield, Celso Grebogi posted to transition slow model folding codons by saunders on 2009-10-26 12:14:50 as
	On the critical -foliated formations of finite groups [My Copy] Discrete Mathematics and Applications, Vol. 16, No. 3. (2006), pp. 289-298. by Sorokina, M.M., Korpacheva, M.A. posted to nnet folding finite_groups by beete on 2009-10-23 11:10:16 as
	Backbone dynamics of TFE-induced native-like fold of region 4 of Escherichia coli RNA polymerase sigma<SUP><FONT SIZE='-1'>70</FONT></SUP> subunit [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Piotr Kaczka, Agnieszka Polkowska-Nowakowska, Krystyna Bolewska, Igor Zhukov, Jaros&lstrok;aw Pozna&nacute;ski, Kazimierz L. Wierzchowski posted to folding by carlosjavierna on 2009-10-23 08:37:31 as
	Mechanism of formation of the C-terminal beta-hairpin of the B3 domain of the immunoglobulin binding protein G from <I>Streptococcus</I>. III. Dynamics of long-range hydrophobic interactions [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Agnieszka Lewandowska, Stanis&lstrok;aw O&lstrok;dziej, Adam Liwo, Harold A. Scheraga posted to folding by carlosjavierna on 2009-10-23 08:23:03 as
	Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues [My Copy] Nature Structural & Molecular Biology, Vol. 3, No. 2. (01 February 1996), pp. 193-205. by Sepideh Khorasanizadeh, Iain D. Peters, Heinrich Roder posted to ubiquitin proteins kinetics folding by edws on 2009-10-23 04:23:19 as
	Kinetics of unfolding and refolding of proteins 1I. Mathematical analysis [My Copy] Journal of Molecular Biology*, Vol. 73, No. 2. (January 1973), pp. 145-163. by A. Ikai posted to proteins kinetics folding by edws on 2009-10-23 04:22:42 as

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protein	417
rna	179
biophysics	88
review	83
structure	82
md	50
protein_structure	43
membrane	40
modeling	34
bioinformatics	33
electrostatics	31
kinetics	31
prediction	31
binding	30
evolution	30
nmr	29
peptide	26
proteins	26
model	25
simulation	25
potential	23
molecular_dynamics	22
cytochrome-c	21
dna	19
dynamics	19
landscape	17
energy	16
molecular	16
stability	16
co-translation	15
computational_biology	15
foce_field	15
groel	15
coarse-graining	14
contact	14
entropy	14
experiment	14
free-energy	14
microphysics	14
theory	14
ribozyme	13
transmembrane	13
design	12
modelling	12
residue-residue	12
ribosome	12
secondary_structure	12
transition	12
unfolded	12
conformation	11
cytochrome	11
function	11
lattice	11
secondary-structure	11
bio_systems	10
chaperonin	10
crowding	10
cyt-c-folding	10
denatured	10
pathway	10
tetrahymena	10
topology	10
fret	9
helix	9
hydrophobicity	9
mc	9
metadynamics	9
protein_folding	9
pseudoknots	9
alfa-lactalbumin	8
amyloid	8
casp	8
casp6	8
cotranslation	8
exchange	8
hp	8
interaction	8
lattice_models	8
ncrna	8
protein-protein	8
rate	8
2009	7
analysis	7
bc800	7
cecconi	7
cgreview	7
experimental	7
hpmodel	7
molecular-dynamics	7
network	7
protein_surface	7
qualifier	7
sampling	7
sequence	7
statistical_potential	7
supramolecular	7
alpha-helix	6
flexibility	6
protein_domains	6
secondary	6

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