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	The Sequence Alignment/Map format and SAMtools [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2078-2079. by Heng Li, Bob Handsaker, Alec Wysoker, et al.Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin, 1000 Genome Project Data Processing Subgroup posted to short-reads format algorithm by urgi on 2009-10-12 15:08:04 as along with 28 people and 2 groups n00c darian cthachuk hzoltan seb1 heliopais idonaldson GustavoLacerda stubrown cassj kshameer ciax polivares carlosjavierna jandot katholt jmcq guhjy orzenil jasontsai operon farhat AlexBateman chrisamiller nuin natstreet sandfire druvus BergmanLab Journal picks
	Computer storage and retrieval of generic chemical structures in patents. 9. An algorithm to find the extended set of smallest rings in structurally explicit generics [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 29, No. 3. (1 August 1989), pp. 207-214. by Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch posted to gensal markush language format by N-te_Jr on 2009-09-17 13:21:51 as
	Computer storage and retrieval of generic chemical structures in patents. 10. Assignment and logical bubble-up of ring screens for structurally explicit generics [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 29, No. 3. (1 August 1989), pp. 215-224. by Geoffrey M. Downs, Valerie J. Gillet, John D. Holliday, Michael F. Lynch posted to gensal markush language format by N-te_Jr on 2009-09-17 13:21:38 as
	Computer storage and retrieval of generic chemical structures in patents. 15. Generation of topological fragment descriptors from nontopological representations of generic structure components [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 33, No. 3. (1 May 1993), pp. 369-377. by J. D. Holliday, G. M. Downs, V. J. Gillet, M. F. Lynch posted to gensal markush language format by N-te_Jr on 2009-09-17 13:21:20 as
	Computer storage and retrieval of generic chemical structures in patents. 7. Parallel simulation of a relaxation algorithm for chemical substructure search [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 26, No. 3. (1 August 1986), pp. 118-126. by Valerie J. Gillet, Stephen M. Welford, Michael F. Lynch, et al.Peter Willett, John M. Barnard, Geoff M. Downs, Gordon Manson, J. Thompson posted to gensal markush language format by N-te_Jr on 2009-09-17 13:21:02 as
	Computer storage and retrieval of generic chemical structures in patents. 5. Algorithmic generation of fragment descriptors for generic structure screening [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 24, No. 2. (1 May 1984), pp. 57-66. by Stephen M. Welford, Michael F. Lynch, John M. Barnard posted to gensal markush language format by N-te_Jr on 2009-09-17 13:20:26 as
	Computer storage and retrieval of generic chemical structures in patents. 14. Fragment generation from generic structures [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 32, No. 5. (1 September 1992), pp. 453-462. by J. D. Holliday, G. M. Downs, V. J. Gillet, M. F. Lynch posted to gensal markush language format by N-te_Jr on 2009-09-17 13:20:09 as
	Computer storage and retrieval of generic chemical structures in patents. 13. Reduced graph generation [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 31, No. 2. (1 May 1991), pp. 260-270. by Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, Michael F. Lynch, Winfried Dethlefsen posted to gensal markush language format by N-te_Jr on 2009-09-17 13:19:53 as
	Computer Storage and Retrieval of Generic Chemical Structures in Patents. 16. The Refined Search: An Algorithm for Matching Components of Generic Chemical Structures at the Atom-Bond Level [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 35, No. 1. (1 January 1995), pp. 1-7. by J. D. Holliday, M. F. Lynch posted to gensal markush language format by N-te_Jr on 2009-09-17 13:17:09 as
	Computer storage and retrieval of generic chemical structures in patents. 8. Reduced chemical graphs and their applications in generic chemical structure retrieval [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 27, No. 3. (1 August 1987), pp. 126-137. by Valerie J. Gillet, Geoffrey M. Downs, Ai Ling, et al.Michael F. Lynch, Pallapa Venkataram, Jennifer V. Wood, Winfried Dethlefsen posted to gensal markush language format by N-te_Jr on 2009-09-17 13:16:48 as
	Computer storage and retrieval of generic chemical structures in patents. 12. Principles of search operations involving parameter lists: matching-relations, user-defined match levels, and transition from the reduced graph search to the refined search [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 31, No. 2. (1 May 1991), pp. 253-260. by Winfried Dethlefsen, Michael F. Lynch, Valerie J. Gillet, Geoffrey M. Downs, John D. Holliday, John M. Barnard posted to gensal markush language format by N-te_Jr on 2009-09-17 13:16:28 as
	Computer Storage and Retrieval of Generic Chemical Structures in Patents. 17. Evaluation of the Refined Search [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 35, No. 4. (1 July 1995), pp. 659-662. by J. D. Holliday, M. F. Lynch posted to gensal markush language format by N-te_Jr on 2009-09-17 13:16:10 as
	Computer storage and retrieval of generic chemical structures in patents. 1. Introduction and general strategy [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 21, No. 3. (1 August 1981), pp. 148-150. by Michael F. Lynch, John M. Barnard, Stephen M. Welford posted to gensal markush language format by N-te_Jr on 2009-09-17 13:15:39 as
	The common component architecture for particle accelerator simulations [My Copy] In CompFrame '07: Proceedings of the 2007 symposium on Component and framework technology in high-performance and scientific computing (2007), pp. 111-120. by Douglas R. Dechow, Boyana Norris, James Amundson posted to synergia2 simulation particle format file architecture accelerator by michaelbussmann on 2009-09-04 12:02:46 as
	Toward a 3D video format for auto-stereoscopic displays [My Copy] In Society of Photo-Optical Instrumentation Engineers (SPIE) Conference Series, Vol. 7073 (October 2008) by A. Vetro, S. Yea, A. Smolic posted to format 3dtv by cristinacosta on 2009-08-27 12:35:42 as
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to xml systemsbiology format by Borelli on 2009-08-22 08:52:27 as along with 42 people and 3 groups agomez heliopais kshameer nuin singhsh greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose bertelsen fgibson thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	Neutral formats for product data exchange: The current situation [My Copy] Computer-Aided Design, Vol. 19, No. 8. (October 1987), pp. 436-443. by J. Owen, M. Bloor posted to overview neutral format exchange data by michaelbussmann on 2009-08-19 14:21:56 as
	Open standards, open formats, and open source [My Copy] Journal of Systems and Software, Vol. 80, No. 11. (November 2007), pp. 1930-1937. by Davide Cerri, Alfonso Fuggetta posted to format interoperability open oss standard by davcer on 2009-07-30 09:39:41 as along with 1 person dhein1030
	Inversions and inverted transpositions as the basis for an almost universal “format” of genome sequences [My Copy] Genomics, Vol. 90, No. 3. (September 2007), pp. 297-305. by Guenter Albrecht-Buehler posted to format genome inversions inverted sequences transpositions by gwallau on 2009-07-16 14:25:26 as
	Formatted text and locales [My Copy] C/C++ Users J., Vol. 18, No. 7. (July 2000), pp. 60-71. by Chuck Allison posted to api c code format formatted java localized sample source technical text usability by hgfernan on 2009-07-11 18:49:47 as
	Computer storage and retrieval of generic chemical structures in patents. 6. An interpreter program for the generic structure description language GENSAL [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 24, No. 2. (1 May 1984), pp. 66-71. by John M. Barnard, Michael F. Lynch, Stephen M. Welford posted to gensal markush language format by N-te_Jr on 2009-06-18 14:26:05 as along with 1 person zimbo1
	Discussing life expectancy with surgical patients: Do patients want to know and how should this information be delivered? [My Copy] BMC Medical Informatics and Decision Making, Vol. 8 (15 June 2008), 24. by Michael G. Clarke, Katherine P. Kennedy, Ruaraidh P. Macdonagh posted to communication format frequency risk by katsinglott on 2009-03-30 11:10:55 as
	The grammar of Markush structure searching: vocabulary vs. syntax [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 31, No. 1. (1 February 1991), pp. 45-53. by Edlyn S. Simmons posted to format markush search by N-te_Jr on 2009-02-15 10:56:23 as
	SYBYL Line Notation (SLN): A Single Notation To Represent Chemical Structures, Queries, Reactions, and Virtual Libraries [My Copy] Journal of Chemical Information and Modeling, Vol. 48, No. 12. (22 December 2008), pp. 2294-2307. by Webster R. Homer, Jon Swanson, Robert J. Jilek, Tad Hurst, Robert D. Clark posted to format markush by N-te_Jr on 2009-02-15 10:55:18 as along with 1 person pauldobson
	Computer representation and handling of structures: retrospect and prospect [My Copy] Journal of Chemical Information and Computer Sciences, Vol. 31, No. 1. (1 February 1991), pp. 68-75. by Ernst Meyer posted to format markush by N-te_Jr on 2009-02-15 10:41:17 as along with 1 person saschurabi
	MAGETabulator, a suite of tools to support the microarray data format MAGE-TAB. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 279-280. by T. F. Rayner, F. I. Rezwan, M. Lukk, et al.X. Z. Bradley, A. Farne, E. Holloway, J. Malone, E. Williams, H. Parkinson posted to data format mage mage-ml mage-tab microarray suite support tool by dswan to the group Bioinformatics on 2009-01-15 16:13:01 as along with 3 people guhjy jfr pkonings
	The Factors Affecting Radio Format Diversity After the Telecommunications Act of 1996: Ownership Concentration, Stations and Audience [My Copy] Journal of Radio & Audio Media, Vol. 14, No. 2. (2007), pp. 122-143. by Heather Polinsky posted to format radio by ghrossman on 2008-12-31 23:02:00 as along with 1 person pthompsen
	MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. [My Copy] Rapid communications in mass spectrometry : RCM, Vol. 18, No. 18. (2004), pp. 2162-2168. by W. H. McDonald, D. L. Tabb, R. G. Sadygov, et al.M. J. MacCoss, J. Venable, J. Graumann, J. R. Johnson, D. Cociorva, J. R. Yates posted to bioinformatics format masspec by alexgeorgiou on 2008-12-18 09:15:00 as
	Extended Newick: it is time for a standard representation of phylogenetic networks [My Copy] BMC Bioinformatics, Vol. 9 (15 December 2008), 532. by Gabriel, Gabriel Valiente posted to data_representation format network phylogeny by barriot on 2008-12-17 06:00:01 as along with 4 people nuin tny jmeppley druvus
	Effective communication of standard errors and confidence intervals [My Copy] Biostat, Vol. 10, No. 1. (1 January 2009), pp. 1-2. by Thomas A. Louis, Scott L. Zeger posted to format standard statistics by paszkows on 2008-12-15 11:12:04 as
	SNPFile - A software library and file format for large scale association mapping and population genetics studies [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Jesper Nielsen, Thomas Mailund posted to cnv file format snps by j1n3l0 on 2008-12-08 16:12:56 as along with 7 people and 2 groups jdbowes misonneh Zephyrus druvus guhjy stajich pkonings Roswell Cancer Crosstalk Mycology
	A common open representation of mass spectrometry data and its application to proteomics research [My Copy] Nature Biotechnology, Vol. 22, No. 11. (04 November 2004), 1459. by Patrick G. A. Pedrioli, Jimmy K. Eng, Robert Hubley, et al.Mathijs Vogelzang, Eric W. Deutsch, Brian Raught, Brian Pratt, Erik Nilsson, Ruth H. Angeletti, Rolf Apweiler, Kei Cheung, Catherine E. Costello, Henning Hermjakob, Sequin Huang, Randall K. Julian, Eugene Kapp, Mark E. Mccomb, Stephen G. Oliver, Gilbert Omenn, Norman W. Paton, Richard Simpson, Richard Smith, Chris F. Taylor, Weimin Zhu, Ruedi Aebersold posted to format massspec metabolomics statistics by talponer on 2008-11-21 13:54:43 as along with 9 people and 1 group moonhouse robert irenas lwilliams andytseng agileproteomics Gehrke nedwards alanrw dbk-lab
	Standardizing data [My Copy] Nat Cell Biol, Vol. 10, No. 10. (October 2008), pp. 1123-1124. posted to format standard by Borelli on 2008-11-03 18:55:21 as
	A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB [My Copy] BMC Bioinformatics, Vol. 7 (06 November 2006), 489. by Tim F. Rayner, Philippe Rocca-Serra, Paul T. Spellman, et al.Helen C. Causton, Anna Farne, Ele Holloway, Rafael A. Irizarry, Junmin Liu, Donald S. Maier, Michael Miller, Kjell Petersen, John Quackenbush, Gavin Sherlock, Christian J. Stoeckert, Joseph White, Patricia L. Whetzel, Farrell Wymore, Helen Parkinson, Ugis Sarkans, Catherine A. Ball, Alvis Brazma posted to format mage miame microarray by bertelsen on 2008-09-17 23:25:04 as along with 4 people shikin jfr zakmck dansullivanblk
	StatDataML: An XML Format for Statistical Data [My Copy] by David Meyer, Friedrich Leisch, Torsten Hothorn, Kurt Hornik posted to format stats xml by cottrell on 2008-04-14 19:46:43 as
	Techniques for flexible image/video resolution conversion with heterogeneous terminals [My Copy] IEEE Communications Magazine In Communications Magazine, IEEE, Vol. 45, No. 1. (January 2007), pp. 61-67. by Ming-Sui Lee, Mei-Yin Shen, Jay C. C. Kuo, Akio Yoneyama posted to adaptation capturing complexity computational content conversion degradation flexible format heterogeneous image image-video mosaicking multimedia processing quality resolution signal super terminals video by fujiyoshi-masaaki on 2008-02-25 07:07:02 as
	Corpus Refactoring: a Feasibility Study [My Copy] Journal of Biomedical Discovery and Collaboration, Vol. 2 (13 September 2007), 4. by Helen L. Johnson, William A. Baumgartner, Martin Krallinger, Bretonnel K. Cohen, Lawrence Hunter posted to corpus design format refactoring xml by balex on 2008-01-31 16:17:26 as along with 3 people and 1 group henk-cul biomedtextminer dullhunk dbmi-nlp
	Corpus Design For Biomedical Natural Language Processing [My Copy] by Bretonnel K. Cohen, Et posted to annotation corpus design format usage xml by balex on 2008-01-31 15:54:42 as along with 1 person and 1 group helliontroy biomedical-nlp
	Empirical data on corpus design and usage in biomedical natural language processing. [My Copy] AMIA Annu Symp Proc (2005), pp. 156-160. by K. B. Cohen, L. Fox, P. V. Ogren, L. Hunter posted to corpus design format usage by balex on 2008-01-31 15:51:05 as along with 3 people and 2 groups hpiwowar helliontroy lynnefox biomedical-nlp dbmi-nlp
	The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models [My Copy] Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 524-531. by M. Hucka, A. Finney, H. M. Sauro, et al.H. Bolouri, J. C. Doyle, H. Kitano, and the rest of the SBML Forum:, A. P. Arkin, B. J. Bornstein, D. Bray, A. Cornish-Bowden, A. A. Cuellar, S. Dronov, E. D. Gilles, M. Ginkel, V. Gor, I. I. Goryanin, W. J. Hedley, T. C. Hodgman, J. H. Hofmeyr, P. J. Hunter, N. S. Juty, J. L. Kasberger, A. Kremling, U. Kummer, N. Le Novere, L. M. Loew, D. Lucio, P. Mendes, E. Minch, E. D. Mjolsness, Y. Nakayama, M. R. Nelson, P. F. Nielsen, T. Sakurada, J. C. Schaff, B. E. Shapiro, T. S. Shimizu, H. D. Spence, J. Stelling, K. Takahashi, M. Tomita, J. Wagner, J. Wang posted to format language modelling sbml standard systems_biology by lenov on 2008-01-22 10:40:14 as along with 20 people and 2 groups jporternj daforerog whitead antonkratz michaelbarton allysonlister rh020 shikin subhacom irenas husain easr balajis wnpx jbchang nicholasflann pmendes csanford AlexanderPico dullhunk Jiang Research Group dbk-lab
	Representations of molecular pathways: an evaluation of SBML, PSI MI and BioPAX. [My Copy] Bioinformatics (Oxford, England), Vol. 21, No. 24. (15 December 2005), pp. 4401-4407. by Lena Strömbäck, Patrick Lambrix posted to biopax data dt format pathway psi-mi representation sbml by wnpx on 2007-10-17 19:19:55 as along with 6 people and 2 groups fgibson allysonlister agomez kuhn balajis dagmar dIEMoSIRIS compneur
	What is mzXML good for? [My Copy] Expert Rev Proteomics, Vol. 2, No. 6. (December 2005), pp. 839-845. by S. M. Lin, L. Zhu, A. Q. Winter, M. Sasinowski, W. A. Kibbe posted to data format proteomics by pgan on 2007-03-28 22:09:52 as along with 3 people stajich agileproteomics nedwards
	HL7 Clinical Document Architecture, Release 2 [My Copy] J Am Med Inform Assoc, Vol. 13, No. 1. (1 January 2006), pp. 30-39. by Robert H. Dolin, Liora Alschuler, Sandy Boyer, et al.Calvin Beebe, Fred M. Behlen, Paul V. Biron, Amnon Shabo Shvo posted to document format hl7 standards by mjernigan on 2007-02-24 19:01:53 as along with 3 people and 3 groups FemkeDeBackere erisu jago TELEPAT-ES mgh-lcs Integrative Expertise for Global Health
	The HL7 Clinical Document Architecture. [My Copy] J Am Med Inform Assoc, Vol. 8, No. 6. (c 2001), pp. 552-569. by R. H. Dolin, L. Alschuler, C. Beebe, et al.P. V. Biron, S. L. Boyer, D. Essin, E. Kimber, T. Lincoln, J. E. Mattison posted to document format hl7 standards by mjernigan to the group mgh-lcs on 2007-02-24 18:52:46 as along with 4 people and 3 groups chemistmd lmi_swap taraftar BvG Philippine Medical Informatics TELEPAT-ES Integrative Expertise for Global Health
	A New Type of Folk-inspired Definition in English Monolingual Learners' Dictionaries and its Usefulness for Conveying Syntactic Information [My Copy] International Journal of Lexicography, Vol. 19, No. 3. (September 2006), pp. 225-242. by Lew, Robert, Dziemianko, Anna posted to definition dictionaries format learners by rlew on 2007-01-06 15:18:31 as along with 1 group lexicography
	PAX of mind for pathway researchers. [My Copy] Drug discovery today, Vol. 10, No. 13. (1 July 2005), pp. 937-942. by J. S. Luciano posted to biopax data dt format pathway representation by wnpx on 2006-11-17 15:55:21 as along with 4 people allysonlister balajis dullhunk lenov
	Pragmatics and natural language generation [My Copy] Artif. Intell., Vol. 43, No. 2. (May 1990), pp. 153-197. by Eduard H. Hovy posted to emotions format generation nlg by mortimer to the group UoY-CS-AIG on 2005-08-30 15:58:28 as along with 1 person and 1 group matwendt AI

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markush	16
language	15
gensal	13
data	6
corpus	4
document	4
hl7	4
standard	4
standards	4
xml	4
design	3
emotions	3
generation	3
mage	3
microarray	3
nlg	3
statistics	3
biopax	2
definition	2
dictionaries	2
dt	2
file	2
learners	2
mage-ml	2
mage-tab	2
massspec	2
metabolomics	2
pathway	2
processing	2
refactoring	2
representation	2
sbml	2
suite	2
support	2
text	2
tool	2
usage	2
accelerator	1
algorithm	1
annotation	1
api	1
architecture	1
bioinformatics	1
biology	1
c	1
capturing	1
cnv	1
code	1
communication	1
computational	1
content	1
conversion	1
curation	1
data_representation	1
exchange	1
flexible	1
formatted	1
genome	1
heterogeneous	1
image	1
image-video	1
inversions	1
inverted	1
java	1
localized	1
masspec	1
miame	1
mining	1
mosaicking	1
multimedia	1
network	1
nlp	1
open	1
oss	1
overview	1
particle	1
phylogeny	1
proteomics	1
psi-mi	1
quality	1
radio	1
reports	1
resolution	1
risk	1
sample	1
samtools	1
search	1
sequences	1
sequencing	1
short-reads	1
simulation	1
snps	1
source	1
super	1
synergia2	1
systems_biology	1
systemsbiology	1
terminals	1
transpositions	1
usability	1

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