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Tag fresco [21 articles]

Recent papers classified by the tag fresco.
  • DIALIGN: finding local similarities by multiple sequence alignment
    Bioinformatics, Vol. 14, No. 3. (1 April 1998), pp. 290-294.
    by B Morgenstern, K Frech, A Dress, T Werner
    posted to compbio fresco by adijr on 2007-09-18 01:16:12 as ** along with 1 person and 1 group indigoviolet EisenLab
  • PipMaker---A Web Server for Aligning Two Genomic DNA Sequences
    Genome Res., Vol. 10, No. 4. (1 April 2000), pp. 577-586.
    by Scott Schwartz, Zheng Zhang, Kelly A Frazer, Arian Smit, Cathy Riemer, John Bouck, Richard Gibbs, Ross Hardison, Webb Miller
    posted to compbio fresco by adijr on 2007-09-18 01:22:54 as ** along with 3 people aprasad michC wenhan
  • Multiple DNA and protein sequence alignment based on segment-to-segment comparison
    Proceedings of the National Academy of Sciences, Vol. 93, No. 22. (29 October 1996), pp. 12098-12103.
    by Burkhard Morgenstern, Andreas Dress, Thomas Werner
    posted to compbio fresco by adijr on 2007-09-19 05:28:01 as ** along with 2 people gjuggler newton1234
  • A Course in Game Theory
    (12 July 1994)
    by Martin J Osborne, Ariel Rubinstein
    posted to compbio fresco by adijr on 2007-09-18 01:19:53 as ** along with 6 people and 1 group toomash fredrikhw smmurphy reiju masteraka YoshiY Oslo-economists
  • AVID: A Global Alignment Program
    Genome Res., Vol. 13, No. 1. (1 January 2003), pp. 97-102.
    by Nick Bray, Inna Dubchak, Lior Pachter
    posted to compbio fresco by adijr on 2007-09-18 01:04:18 as ** along with 2 people and 1 group indigoviolet yoanjacquemin EisenLab
  • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res, Vol. 22, No. 22. (11 November 1994), pp. 4673-4680.
    by JD Thompson, DG Higgins, TJ Gibson
    posted to compbio fresco by adijr on 2007-09-18 01:25:26 as ** along with 24 people and 1 group usagi-kirin jmw greger_halltorp jshapiro mercaptan evaf caldavis miguel onlyrey bjorns aprasad RMGraze moborg arcticrasta dullhunk caporaso ahanora Haggan BioNica leelarcombe timflutre xingxu newton1234 Lombardo_7 biomedical-nlp
  • MCALIGN: Stochastic Alignment of Noncoding DNA Sequences Based on an Evolutionary Model of Sequence Evolution
    Genome Res., Vol. 14, No. 3. (1 March 2004), pp. 442-450.
    by Peter D Keightley, Toby Johnson
    posted to compbio fresco by adijr on 2007-09-18 01:14:34 as ** along with 2 people and 1 group penka lilou Nie
  • A hierarchical approach to aligning collinear regions of genomes
    Bioinformatics, Vol. 18, No. 12. (1 December 2002), pp. 1673-1680.
    by Mikhail A Roytberg, Aleksey Y Ogurtsov, Svetlana A Shabalina, Alexey S Kondrashov
    posted to compbio fresco by adijr on 2007-09-18 01:21:12 as ** along with 1 person operon
  • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
    Proc Natl Acad Sci U S A, Vol. 87, No. 6. (March 1990), pp. 2264-2268.
    by S Karlin, SF Altschul
    posted to compbio fresco by adijr on 2007-09-18 01:14:00 as ** along with 7 people and 1 group kaspermunch AaronDarling rabio timflutre cjeans siebertm karfunkel Bioinformatics
  • Binary Codes Capable of Correcting Deletions, Insertions and Reversals
    Soviet Physics Doklady, Vol. 10 (February 1966), 707.
    by VI Levenshtein
    posted to compbio fresco by adijr on 2007-09-18 01:15:04 as ** along with 3 people jdleesmiller mwolter creswick
  • LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA.
    Genome Res, Vol. 13, No. 4. (April 2003), pp. 721-731.
    by M Brudno, CB Do, GM Cooper, MF Kim, E Davydov, ED Green, A Sidow, S Batzoglou,
    posted to compbio fresco by adijr on 2007-08-10 17:13:14 as ** along with 13 people and 1 group operon balajis dpollard xwbcn dquest adepace hdopazo lusk Garamonfok natstreet nklee Neeperando kcrawlik EisenLab
  • Geometric applications of a matrix-searching algorithm
    Algorithmica, Vol. 2, No. 1. (1 March 1987), pp. 195-208.
    by Alok Aggarwal, Maria M Klawe, Shlomo Moran, Peter Shor, Robert Wilber
    posted to compbio fresco by adijr on 2007-09-18 01:00:20 as **
  • A space-efficient algorithm for aligning large genomic sequences
    Bioinformatics, Vol. 16, No. 10. (1 October 2000), pp. 948-949.
    by Burkhard Morgenstern
    posted to compbio fresco by adijr on 2007-09-18 01:15:39 as ** along with 1 person wenhan
  • An improved algorithm for matching biological sequences.
    J Mol Biol, Vol. 162, No. 3. (15 December 1982), pp. 705-708.
    by O Gotoh
    posted to compbio fresco by adijr on 2007-09-18 01:11:20 as ** along with 2 people vavi jofiel
  • Benchmarking tools for the alignment of functional noncoding DNA.
    BMC Bioinformatics, Vol. 5 (21 January 2004)
    by DA Pollard, CM Bergman, J Stoye, SE Celniker, MB Eisen
    posted to compbio fresco by adijr on 2007-09-18 01:26:59 as ** along with 6 people and 1 group cap1 indigoviolet lilou idonaldson gjuggler nklee EisenLab
  • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402.
    by SF Altschul, TL Madden, AA Schäffer, J Zhang, Z Zhang, W Miller, DJ Lipman
    posted to compbio fresco by adijr on 2007-09-19 05:25:24 as ** along with 46 people and 4 groups pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita leelarcombe CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm viktor21614 mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM EisenLab biomedical-nlp Microbial-Ecology Plantandetc
  • T-Coffee: A novel method for fast and accurate multiple sequence alignment.
    J Mol Biol, Vol. 302, No. 1. (8 September 2000), pp. 205-217.
    by C Notredame, DG Higgins, J Heringa
    posted to compbio fresco by adijr on 2007-09-18 01:18:53 as ** along with 9 people and 1 group miguel dayjm indigoviolet ffranca treangen Haggan siebertm marti newton1234 EisenLab
  • All Highest Scoring Paths in Weighted Grid Graphs and Their Application to Finding All Approximate Repeats in Strings
    SIAM J. Comput., Vol. 27, No. 4. (August 1998), pp. 972-992.
    by Jeanette P Schmidt
    posted to compbio fresco by adijr on 2007-09-18 01:22:20 as **
  • Rose: generating sequence families
    Bioinformatics, Vol. 14, No. 2. (1 March 1998), pp. 157-163.
    by J Stoye, D Evers, F Meyer
    posted to compbio fresco by adijr on 2007-09-18 01:23:17 as ** along with 1 person gjuggler
  • Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.
    Genome Res, Vol. 11, No. 8. (August 2001), pp. 1335-1345.
    by CM Bergman, M Kreitman
    posted to compbio fresco by adijr on 2007-09-18 01:03:46 as ** along with 4 people and 2 groups penka cisevol hugoparker brant Nie cis-regulatory-evolution
  • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    Journal of Molecular Biology, Vol. 48, No. 3. (28 March 1970), pp. 443-453.
    by Saul B Needleman, Christian D Wunsch
    posted to compbio fresco by adijr on 2007-09-18 01:17:56 as ** along with 3 people BioNica RamuAnandakrishnan granujilla
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