Tag fullatom [16 articles] Export

Recent papers classified by the tag fullatom.

	Nucleotide Effects on the Structure and Dynamics of Actin. [My Copy] Biophys J (25 May 2007) by Xiange Zheng, Karthikeyan Diraviyam, David Sept posted to actin fullatom md protein by cactus on 2008-11-07 08:20:08 as along with 2 people jstajic choonpeng
	Allostery of actin filaments: molecular dynamics simulations and coarse-grained analysis. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 37. (13 September 2005), pp. 13111-13116. by J. W. Chu, G. A. Voth posted to actin coarse-grained filament fullatom md protein by cactus on 2008-11-07 07:48:40 as along with 2 people BragilMassoud choonpeng
	Protein folding under confinement: A role for solvent [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 25. (19 June 2007), pp. 10430-10434. by Del Lucent, V. Vishal, Vijay S. Pande posted to confinement for_ref fullatom md simulation by cactus on 2008-09-29 11:12:32 as along with 4 people carlosjavierna melting cjeans rph
	Entropic contributions and the influence of the hydrophobic environment in promiscuous protein-protein association [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 21. (27 May 2008), pp. 7456-7461. by Chia-En A. Chang, William A. Mclaughlin, Riccardo Baron, Wei Wang, Andrew J. Mccammon posted to binding fullatom protein simulation by cactus on 2008-06-19 09:10:36 as along with 2 people flbarroso higueruelo
	Mechanochemical Coupling in the Myosin Motor Domain. I. Insights from Equilibrium Active-Site Simulations [My Copy] PLoS Computational Biology, Vol. 3, No. 2. (1 February 2007), e21. by Haibo Yu, Liang Ma, Yang Yang, Qiang Cui posted to fullatom md motor myosin qmmm by cactus on 2008-02-27 07:04:00 as
	Force Generation in Kinesin Hinges on Cover-Neck Bundle Formation [My Copy] Structure, Vol. 16, No. 1. (8 January 2008), pp. 62-71. by Wonmuk Hwang, Matthew J. Lang, Martin Karplus posted to fullatom kinesin md motor by cactus on 2008-02-20 07:45:41 as
	Allosteric effects in the marginally stable von Hippel-Lindau tumor suppressor protein and allostery-based rescue mutant design [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 3. (22 January 2008), pp. 901-906. by Jin Liu, Ruth Nussinov posted to allostery design fullatom md mutation by cactus on 2008-02-13 07:31:01 as along with 1 person and 1 group sobolevnrm baker-group
	The Unbinding of ATP from F1-ATPase [My Copy] Biophys. J., Vol. 85, No. 2. (1 August 2003), pp. 695-706. by Iris Antes, David Chandler, Hongyun Wang, George Oster posted to clip f1-atpase fullatom ligand md by cactus on 2007-12-06 13:25:44 as
	Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 47. (20 November 2007), pp. 18496-18501. by Karunesh Arora, Charles L. Brooks posted to allostery binding free-energy fullatom ligand md structural_change by cactus on 2007-11-22 10:02:13 as along with 7 people and 2 groups xdeupi jrperillaj barry allmensch sobolevnrm jlh64 karunesh structural_bioinformatics baker-group
	From the Cover: Hierarchies, multiple energy barriers, and robustness govern the fracture mechanics of alpha-helical and beta-sheet protein domains [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 42. (16 October 2007), pp. 16410-16415. by Theodor Ackbarow, Xuefeng Chen, Sinan Keten, Markus J. Buehler posted to clip2 force fullatom md stability by cactus on 2007-11-22 08:03:08 as along with 1 person choonpeng
	A study of communication pathways in methionyl- tRNA synthetase by molecular dynamics simulations and structure network analysis [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 40. (2 October 2007), pp. 15711-15716. by Amit Ghosh, Saraswathi Vishveshwara posted to analysis correlation dynamics fullatom md by cactus on 2007-11-20 11:41:30 as along with 3 people and 1 group zwang sobolevnrm phoenixzxl baker-group
	Open interface and large quaternary structure movements in 3D domain swapped proteins: insights from molecular dynamics simulations of the C-terminal swapped dimer of ribonuclease A. [My Copy] Biophys J, Vol. 88, No. 3. (March 2005), pp. 2003-2012. by A. Merlino, M. A. Ceruso, L. Vitagliano, L. Mazzarella posted to dimer domain_swapping fullatom md rnase_a by cactus on 2007-10-12 09:18:19 as
	The Structural Coupling between ATPase Activation and Recovery Stroke in the Myosin II Motor [My Copy] Structure, Vol. 15, No. 7. (18 July 2007), pp. 825-837. by Sampath Koppole, Jeremy C. Smith, Stefan Fischer posted to fullatom model myosin structural_change by cactus on 2007-08-08 11:23:07 as along with 1 person ckmyo
	Molecular Dynamics Analysis of Structural Factors Influencing Back Door Pi Release in Myosin [My Copy] Biophys. J., Vol. 86, No. 6. (1 June 2004), pp. 3794-3803. by David J. Lawson, Edward Pate, Ivan Rayment, Ralph G. Yount posted to fullatom md motor myosin pi by cactus on 2007-06-06 18:18:15 as
	Hydrophobic Cooperativity as a Mechanism for Amyloid Nucleation [My Copy] Journal of Molecular Biology, Vol. 368, No. 3. (4 May 2007), pp. 894-901. by Jr Hills, Brooks posted to amyloid fullatom md model by cactus on 2007-05-07 10:20:16 as
	The Structure of the Alzheimer Amyloid [beta] 10-35 Peptide Probed through Replica-Exchange Molecular Dynamics Simulations in Explicit Solvent [My Copy] Journal of Molecular Biology, Vol. 366, No. 1. (9 February 2007), pp. 275-285. by Andrij Baumketner, Joan-Emma Shea posted to a-beta amyloid fullatom md by cactus on 2007-05-07 08:53:11 as along with 1 person carlescorbi

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md	14
motor	3
myosin	3
protein	3
actin	2
allostery	2
amyloid	2
binding	2
ligand	2
model	2
simulation	2
structural_change	2
a-beta	1
analysis	1
clip	1
clip2	1
coarse-grained	1
confinement	1
correlation	1
design	1
dimer	1
domain_swapping	1
dynamics	1
f1-atpase	1
filament	1
for_ref	1
force	1
free-energy	1
kinesin	1
mutation	1
pi	1
qmmm	1
rnase_a	1
stability	1

Tag fullatom [16 articles] Export

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