Tag function_prediction [59 articles] Export

Recent papers classified by the tag function_prediction.

	Inferring protein function by domain context similarities in protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2 December 2009), 395. by Song Zhang, Hu Chen, Ke Liu, Zhirong Sun posted to yeast protein-protein_interaction ppi nextpickmeeting network function_prediction domain_context domain by bdessailly on 2009-12-14 10:42:31 as along with 5 people and 1 group sillitoe barriot phoenixzxl poirel karthikraman Orengo Group Journal Picks
	Effective Identification of Conserved Pathways in Biological Networks Using Hidden Markov Models [My Copy] PLoS ONE In PLoS ONE, Vol. 4, No. 12. (7 December 2009), e8070. by Xiaoning Qian,, Byung-Jun Yoon, posted to pathway_recognition molecular_interactions hmm genome_annotation function_prediction biological_networks by CorinYeats to the group Orengo Group Journal Picks on 2009-12-10 11:44:02 as along with 3 people freesci sobolevnrm phoenixzxl
	Linking Human Diseases to Animal Models Using Ontology-Based Phenotype Annotation [My Copy] PLoS biology In PLoS Biol, Vol. 7, No. 11. (24 November 2009), e1000247. by Nicole L. Washington, Melissa A. Haendel, Christopher J. Mungall, Michael Ashburner, Monte Westerfield, Suzanna E. Lewis posted to similarity_metrics phenotype_genotype_associations function_prediction disease_ontology comparing_phenotypes 11-12-09 by CorinYeats to the group Orengo Group Journal Picks on 2009-11-26 14:05:50 as along with 7 people and 1 group jperkins pmidford cjm druvus dullhunk gthorisson Zephyrus Journal picks
	Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R97. by James Costello, Mehmet Dalkilic, Scott Beason, et al.Jeff Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian Eads, Justen Andrews posted to protein_protein_interaction ppi gene_network function_prediction expression drosophila_melanogaster 13-nov-09 by bdessailly to the group Orengo Group Journal Picks on 2009-11-13 10:13:07 as along with 8 people and 1 group meanerelk abc623 Borelli carlk sotacam kiekyon druvus daveGerrard BergmanLab
	How and when should interactome-derived clusters be used to predict functional modules and protein function? [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3143-3150. by Jimin Song, Mona Singh posted to survey networks modules functional_modules function_prediction clusterings by saket on 2009-10-03 07:37:28 as along with 5 people and 1 group jperkins TRHvidsten grahamc jsuchit carlk Orengo Group Journal Picks
	Improving Structure-Based Function Prediction Using Molecular Dynamics [My Copy] Vol. 17, No. 7. (15 July 2009), pp. 919-929. by Dariya S. Glazer, Randall J. Radmer, Russ B. Altman posted to function_prediction molecular_dynamics structural_ensemble by apaydin on 2009-07-28 05:28:03 as along with 1 person and 2 groups barry structural_bioinformatics McCammon
	Clustering by common friends finds locally significant proteins mediating modules [My Copy] Bioinformatics, Vol. 23, No. 9. (1 May 2007), pp. 1124-1131. by Bill Andreopoulos, Aijun An, Xiaogang Wang, Michalis Faloutsos, Michael Schroeder posted to function_prediction hierarchical inter_modules by saket on 2009-07-23 15:52:11 as along with 2 people carlk zwang
	Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 69. by Antonio Marco, Ignacio Marin posted to function_prediction gene_ontology go_cut hierarchical by saket on 2009-07-21 02:18:37 as along with 4 people fgibson kiekyon sjcockell barriot
	A critical assessment of Mus musculus gene function prediction using integrated genomic evidence [My Copy] Genome Biology, Vol. 9, No. Suppl 1. (2008), S2. by Lourdes P. Castillo, Murat Tasan, Chad Myers, et al.Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Lin, Gabriel Berriz, Francis Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David Hill, David W. Farley, Chris Grouios, Debajyoti Ray, Judith Blake, Minghua Deng, Michael Jordan, William Noble, Quaid Morris, Judith K. Seetharaman, Ziv B. Joseph, Ting Chen, Fengzhu Sun, Olga Troyanskaya, Edward Marcotte, Dong Xu, Timothy Hughes, Frederick Roth posted to function_prediction ml survey by saket on 2009-07-20 22:01:26 as along with 6 people phoenixzxl carlk kgutwin ptrobajo guhjy aconesa
	Estimation of Amino Acid Residue Substitution Rates at Local Spatial Regions and Application in Protein Function Inference: A Bayesian Monte Carlo Approach [My Copy] Molecular Biology and Evolution, Vol. 23, No. 2. (20 February 2006), pp. 421-436. by Yan Y. Tseng, Jie Liang posted to function_prediction markov_chain_monte_carlo sequence_alignment by iaolier on 2009-06-03 15:22:18 as along with 1 person drastic
	Prediction of functional specificity determinants from protein sequences using log-likelihood ratios [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 164-171. by Jimin Pei, Wei Cai, Lisa N. Kinch, Nick V. Grishin posted to function_prediction primary_sequence protein_classification by iaolier on 2009-06-03 15:06:24 as
	INTREPID--INformation-theoretic TREe traversal for Protein functional site IDentification [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2445-2452. by Sriram Sankararaman, Kimmen Sjolander posted to function_prediction functional_sites sequence_alignment by iaolier on 2009-06-02 22:44:23 as
	Structural descriptor database: a new tool for sequence based functional site prediction [My Copy] BMC Bioinformatics, Vol. 9 (25 November 2008), 492. by Juliana S. Bernardes, Jorge H. Fernandez, Ana T. Vasconcelos posted to function_prediction functional_sites web-based_tool by iaolier on 2009-06-02 22:35:53 as along with 2 people Publicase Md_2007
	Clustering protein environments for function prediction: finding PROSITE motifs in 3D [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 4. (2007), S10. by Sungroh Yoon, Jessica Ebert, Eui Y. Chung, Giovanni De Micheli, Russ Altman posted to function_prediction functional_sites machine_learning motifs protein_structure by iaolier on 2009-06-02 15:53:59 as along with 3 people and 1 group HawkinsJohnC shadowman Einat structural_bioinformatics
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted to function_prediction microarray modules networks by saket on 2009-05-06 16:23:18 as along with 4 people jfr yaredo tmmurali phoenixzxl
	Kernel-based data fusion and its application to protein function prediction in yeast. [My Copy] Pac Symp Biocomput (2004), pp. 300-311. by G. R. Lanckriet, M. Deng, N. Cristianini, M. I. Jordan, W. S. Noble posted to function_prediction kernel by dragonrez on 2009-03-11 17:31:13 as along with 3 people fabgoos carlk jccaicedo
	Discovery of biological networks from diverse functional genomic data. [My Copy] Genome Biol, Vol. 6, No. 13. (2005) by C. L. Myers, D. Robson, A. Wible, et al.M. A. Hibbs, C. Chiriac, C. L. Theesfeld, K. Dolinski, O. G. Troyanskaya posted to function_prediction by dragonrez on 2009-03-11 15:20:46 as along with 5 people roys cswinburne grahamc carlk AbnerCYH
	A combined algorithm for genome-wide prediction of protein function. [My Copy] Nature, Vol. 402, No. 6757. (4 November 1999), pp. 83-86. by E. M. Marcotte, M. Pellegrini, M. J. Thompson, T. O. Yeates, D. Eisenberg posted to function_prediction by dragonrez on 2009-03-11 15:18:43 as along with 7 people and 1 group jperkins Robinder shivaram lfriedl ruvido cjeans carlk kdl
	Network-based prediction of protein function [My Copy] Molecular Systems Biology, Vol. 3 (13 March 2007) by Roded Sharan, Igor Ulitsky, Ron Shamir posted to function_prediction kernel by dragonrez on 2009-03-11 15:17:02 as along with 24 people and 1 group cerca ptrobajo kiekyon AbnerCYH roys jwhitney Sonix mtaschuk babakap phoenixzxl druvus pengchy jjray cmmorel wnpx julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel mingzhi ellakat carlk SysbioMPI-TCells
	GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function [My Copy] Genome Biology, Vol. 9, No. Suppl 1. (2008), S4. by Sara Mostafavi, Debajyoti Ray, David W. Farley, Chris Grouios, Quaid Morris posted to function_prediction kernel by dragonrez on 2009-03-11 03:00:41 as along with 3 people balajis udivi guhjy
	Cohesive versus Flexible Evolution of Functional Modules in Eukaryotes [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000276. by Like Fokkens, Berend Snel posted to complexes conserved_modules evolution function_prediction pathways by saket on 2009-02-16 16:28:36 as along with 2 people biomcgary grahamc
	Protein Function Prediction Based on Patterns in Biological Networks [My Copy] Research in Computational Molecular Biology (2008), pp. 197-213. by Mustafa Kirac, Gultekin Ozsoyoglu posted to function_prediction gene_ontology motifs by saket on 2009-01-27 16:25:11 as
	Domain-based and family-specific sequence identity thresholds increase the levels of reliable protein function transfer. [My Copy] Journal of molecular biology, Vol. 387, No. 2. (27 March 2009), pp. 416-430. by Sarah Addou, Robert Rentzsch, David Lee, Christine A. Orengo posted to function_prediction protein_sequence by barry on 2009-01-23 02:52:27 as along with 1 person and 1 group robertrentzsch Orengo Group Journal Picks
	An en masse phenotype and function prediction system for Mus musculus. [My Copy] Genome biology, Vol. 9 Suppl 1 (2008) by M. Taşan, W. Tian, D. P. Hill, F. D. Gibbons, J. A. Blake, F. P. Roth posted to classifiers function_prediction machine_learning mouse prediction by eetadic on 2008-12-12 19:28:21 as along with 1 person guhjy
	Assessing the accuracy of prediction algorithms for classification: an overview [My Copy] Bioinformatics, Vol. 16, No. 5. (1 May 2000), pp. 412-424. by Pierre Baldi, Soren Brunak, Yves Chauvin, Claus A. Andersen, Henrik Nielsen posted to function_prediction by cmura to the group MuraLab on 2008-12-08 00:52:28 as along with 11 people waghsk ucbcjbm MarcoAlvarez ihaque chad_davis eckart_bindewald skrofej girschick Evangelia wenhan sconlan
	Systematic discovery of functional modules and context-specific functional annotation of human genome. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i222-229. by Yu Huang, Haifeng Li, Haiyan Hu, et al.Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong J. Zhou posted to algorithms evolution function_prediction microarray modules motifs networks random_walks by saket on 2008-11-14 19:32:38 as along with 7 people meanerelk ptrobajo Borelli carlk jeremymiller cswinburne cabbagezs
	ProCope - Protein Complex Prediction and Evaluation [My Copy] Bioinformatics (17 July 2008), btn376. by Jan Krumsiek, Caroline C. Friedel, Ralf Zimmer posted to complexes function_prediction modules software by saket on 2008-11-13 22:54:04 as along with 4 people carlk zwang guhjy chad_davis
	Predicting protein function from domain content [My Copy] Bioinformatics (30 June 2008), btn312. by Kristoffer Forslund, Erik L. Sonnhammer posted to ddi domains function_prediction by saket on 2008-11-13 22:44:57 as along with 5 people phoenixzxl laurenbragg druvus zwang reyez
	An in silico method for detecting overlapping functional modules from composite biological networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Ioannis Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to algorithms core_attachment function_prediction gene_ontology microarray modules networks overlapping_modules by saket on 2008-11-12 21:49:46 as along with 7 people dolchan jfr diamantis imina renatomilani lptolik jonesn
	Predicting protein function from sequence and structure [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 12. (01 December 2007), pp. 995-1005. by David Lee, Oliver Redfern, Christine Orengo posted to function_prediction by cmura to the group MuraLab on 2008-10-31 13:46:41 as along with 15 people dbikard operon michaelbarton smpraveena MarcoAlvarez skhadar neils cjeans zwang Evangelia hpaces Ema renatomilani kluck janasont
	A genomewide functional network for the laboratory mouse. [My Copy] PLoS computational biology, Vol. 4, No. 9. (2008), e1000165. by Y. Guan, C. L. Myers, R. Lu, I. R. Lemischka, C. J. Bult, O. G. Troyanskaya posted to data_integration function_prediction interactions mouse network_biology proteomics by grahamc on 2008-10-06 21:54:23 as along with 9 people roys dansullivanblk biomcgary cswinburne zwang pengchy ptrobajo guhjy tmmurali
	Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues. [My Copy] Genome biology, Vol. 9, No. 9. (2008) by Sami Kilpinen, Reija Autio, Kalle Ojala, et al.Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf I. Skotheim, Mari Björkman, John-Patrick P. Mpindi, Saija Haapa-Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi posted to disease function_prediction microarray by grahamc on 2008-10-06 20:55:29 as along with 10 people and 1 group zufar daforerog jfr shikin pengchy imina guhjy klo fpattyn dolchan GeneGo
	A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge [My Copy] BMC Bioinformatics, Vol. 9 (18 September 2008), 382. by Young-Rae Cho, Lei Shi, Murali Ramanathan, Aidong Zhang posted to function_prediction proteomics by grahamc on 2008-10-06 20:33:28 as along with 1 person guhjy
	Local Function Conservation in Sequence and Structure Space [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (4 July 2008), e1000105. by Nils Weinhold, Oliver Sander, Francisco S. Domingues, Thomas Lengauer, Ingolf Sommer posted to function_prediction protein_sequence protein_structure by barry to the group structural_bioinformatics on 2008-09-08 17:53:09 as along with 4 people and 2 groups TRHvidsten protobuddha cabbagesofdoom Ema McCammon Bioinformatics
	Integration of relational and hierarchical network information for protein function prediction [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Xiaoyu Jiang, Naoki Nariai, Martin Steffen, Simon Kasif, Eric Kolaczyk posted to function_prediction gene_ontology interactions protein-protein by grahamc on 2008-09-03 21:16:55 as along with 6 people cgaugain yas mitko tmmurali barriot dansullivanblk
	Computational prediction of cancer-gene function. [My Copy] Nature reviews. Cancer, Vol. 7, No. 1. (14 January 2007), pp. 23-34. by Pingzhao Hu, Gary Bader, Dennis A. Wigle, Andrew Emili posted to data_aggregation function_prediction by srp33 on 2008-05-28 17:36:12 as along with 7 people and 1 group ptrobajo guhjy jfr ealloza emb51 Garamonfok cerami BioinfoCIPF
	Protein complexes and functional modules in molecular networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 21. (14 October 2003), pp. 12123-12128. by Victor Spirin, Leonid A. Mirny posted to biological_networks function_prediction interactions protein-protein by grahamc on 2008-04-23 17:38:21 as along with 15 people and 4 groups lawraga ycho0610 diamantis jiny camster kentsis ujh tmmurali dragonrez karfunkel joseph_x_zhou Evangelia biehl ellakat carlk dbk-lab biophysics HIV_DR bioNetwork_sysBio
	A probabilistic view of gene function. [My Copy] Nat Genet, Vol. 36, No. 6. (June 2004), pp. 559-564. by A. G. Fraser, E. M. Marcotte posted to function_prediction genomics by grahamc on 2008-03-28 20:50:08 as along with 10 people and 1 group bertelsen snuppepuppan ziquje lfriedl opheliav wnpx samal massivemayhem bootsy vietanh0 kdl
	Hierarchical multi-label prediction of gene function. [My Copy] Bioinformatics (12 January 2006) by Zafer Barutcuoglu, Robert E E. Schapire, Olga G G. Troyanskaya posted to function_prediction statistics by grahamc on 2008-03-28 20:39:59 as along with 3 people and 1 group tsoumakas uknandal carlk Multilabel Classification
	Finding function: evaluation methods for functional genomic data [My Copy] BMC Genomics, Vol. 7 (25 July 2006), 187. by Chad L. Myers, Daniel R. Barrett, Matthew A. Hibbs, Curtis Huttenhower, Olga G. Troyanskaya posted to function_prediction genomics network_biology network_confidence statistics by grahamc on 2008-03-28 20:39:02 as along with 8 people and 2 groups saket tjimenez jfr smbaxtersf dejori carlk marck cerca ic4 generif_paper
	Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction [My Copy] Current Opinion in Microbiology, Vol. 7, No. 5. (October 2004), pp. 535-545. by R. Jansen, M. Gerstein posted to function_prediction genomics network_biology network_confidence standards by grahamc on 2008-03-28 20:26:40 as along with 6 people and 2 groups flbarroso okarsligil lfriedl wnpx neils carlk kdl Bioinformatics
	Network biology: understanding the cell's functional organization [My Copy] Nature Reviews Genetics In Nat Rev Genet, Vol. 5, No. 2. (01 February 2004), pp. 101-113. by Albert-Laszlo Barabasi, Zoltan N. Oltvai posted to evolution function_prediction network_biology protein_evolution by grahamc on 2008-03-28 20:08:04 as along with 27 people and 1 group joebilkobailey ess30 poirel tonamswish asadrahman tmarscha cn_honjyo behindtherabbit yangjustinc lawraga sschurer hadesnumb cswinburne babakap carlk pkm daforerog diamantis okarsligil bayesian tny mmt mirzazadeh lpfernandes karfunkel vietanh0 nolodie Bioinformatics
	Functional and topological characterization of protein interaction networks. [My Copy] Proteomics, Vol. 4, No. 4. (April 2004), pp. 928-942. by Soon-Hyung H. Yook, Zoltán N. Oltvai, Albert-László L. Barabási posted to function_prediction network_topology by grahamc on 2008-03-27 17:04:50 as along with 8 people chica lawraga snuppepuppan textoris gabrielr alexg iris_2001 carlk
	Network biology: understanding the cell's functional organization. [My Copy] Nature reviews. Genetics, Vol. 5, No. 2. (February 2004), pp. 101-113. by Albert-László L. Barabási, Zoltán N. Oltvai posted to function_prediction network_topology by grahamc on 2008-03-27 17:03:26 as along with 40 people and 10 groups schwartzjmc daforerog fastjoe23 arsyed thepogoman mtagaya camster snuppepuppan dbk greg guhjy LeightonP hununu felciano mague kuhn textoris rhem1224 lfriedl balajis alexg wnpx jknabe adepace nickluscombe bundschu awooga jdiggans jeremymiller uprock timflutre mikaelhuss gcalda fishtank jayster4 naegele Evangelia heliopais shikin hryk streptomyces dbk-lab kdl EisenLab TCR_Signaling EBI-regulation SysbioMPI-TCells GeschwindLab generif_paper GeneGo
	Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (1 June 2005) by E. Nabieva, K. Jim, A. Agarwal, B. Chazelle, M. Singh posted to function_prediction by jiny on 2008-03-19 21:31:49 as along with 7 people and 2 groups tmmurali okarsligil lfriedl wnpx j3xucite Pao-Yang carlk kdl Bioinformatics
	Protein function prediction from interaction networks using a random walk ranking algorithm [My Copy] Bioinformatics and Bioengineering, 2007. BIBE 2007. Proceedings of the 7th IEEE International Conference on In Bioinformatics and Bioengineering, 2007. BIBE 2007. Proceedings of the 7th IEEE International Conference on (2007), pp. 42-48. by Valerio Freschi posted to function_prediction by jiny on 2008-03-19 20:58:56 as
	A network of protein-protein interactions in yeast. [My Copy] Nat Biotechnol, Vol. 18, No. 12. (December 2000), pp. 1257-1261. by B. Schwikowski, P. Uetz, S. Fields posted to function_prediction by jiny on 2008-03-19 20:57:26 as along with 7 people and 1 group nolodie fisherp davidecellai dragonrez ichbins81 winterschlaefer carlk Network Analysis of Genes Regulated in Renal Diseases
	Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network [My Copy] Genome Biology, Vol. 5, No. 1. (2003) by Christine Brun, Francois Chevenet, David Martin, Jerome Wojcik, Alain Guenoche, Bernard Jacq posted to function_prediction by jiny on 2008-03-19 20:38:06 as along with 3 people gcalda maralena carlk
	Functional modules by relating protein interaction networks and gene expression [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 31, No. 21. (1 November 2003), pp. 6283-6289. by Sabine Tornow, H. W. Mewes posted to function_prediction by jiny on 2008-03-19 19:00:10 as along with 4 people yaredo saket bertelsen carlk
	The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists [My Copy] Genome Biology, Vol. 8, No. 9. (04 September 2007), R183. by Da Huang, Brad Sherman, Qina Tan, et al.Jack Collins, W. Gregory Alvord, Jean Roayaei, Robert Stephens, Michael Baseler, H. Clifford Lane, Richard Lempicki posted to function_prediction gene_list by dragonrez on 2007-10-12 22:34:16 as along with 9 people VGreiff bertelsen ndiaz guhjy aalibes jfr rdiaz mellabee heliopais

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protein_sequence	11
protein_structure	8
modules	7
gene_ontology	6
networks	6
orthology	6
protein_function	6
microarray	5
network_biology	5
evolution	4
genomics	4
motifs	4
protein_evolution	4
biological_networks	3
comparative_genomics	3
complexes	3
data_integration	3
functional_sites	3
gene_duplication	3
hgt	3
interactions	3
kernel	3
md_simulation	3
phylogenomics	3
phylogeny	3
ppi	3
sequence_comparison	3
statistics	3
structural_genomics	3
structure_comparison	3
survey	3
11-12-09	2
13-nov-09	2
algorithms	2
clusterings	2
comparing_phenotypes	2
conserved_modules	2
disease_ontology	2
drosophila_melanogaster	2
expression	2
functional_modules	2
gene_expression	2
gene_network	2
genome_annotation	2
go_cut	2
hierarchical	2
hmm	2
integration	2
machine_learning	2
molecular_interactions	2
mouse	2
network_confidence	2
network_topology	2
pathway_recognition	2
pathways	2
phenotype_genotype_associations	2
protein-protein	2
protein_protein_interaction	2
proteomics	2
sequence_alignment	2
similarity_metrics	2
classifiers	1
core_attachment	1
data_aggregation	1
ddi	1
disease	1
domain	1
domain_context	1
domains	1
gene_list	1
hiearchical	1
inter_modules	1
markov_chain_monte_carlo	1
ml	1
molecular_dynamics	1
network	1
nextpickmeeting	1
overlapping_modules	1
prediction	1
primary_sequence	1
protein-protein_interaction	1
protein_classification	1
proteininteraction	1
random_walks	1
software	1
standards	1
statistical_power	1
structural_ensemble	1
web-based_tool	1
yeast	1

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