Tag functionprediction [66 articles] Export

Recent papers classified by the tag functionprediction.

	How and when should interactome-derived clusters be used to predict functional modules and protein function? [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3143-3150. by Jimin Song, Mona Singh posted to functionprediction by TRHvidsten on 2009-11-18 13:35:02 as along with 4 people grahamc jsuchit carlk saket
	Identification of genes involved in the same pathways using a Hidden Markov Model-based approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2945-2954. by Alexander Senf, Xue-wen Chen posted to geneexpression functionprediction by TRHvidsten on 2009-11-04 20:16:51 as along with 2 people and 1 group poirel ptrobajo Orengo Group Journal Picks
	The impact of incomplete knowledge on evaluation: an experimental benchmark for protein function prediction [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2404-2410. by Curtis Huttenhower, Matthew A. Hibbs, Chad L. Myers, Amy A. Caudy, David C. Hess, Olga G. Troyanskaya posted to functionprediction by TRHvidsten on 2009-09-01 08:12:44 as along with 3 people wilbur tmmurali phoenixzxl
	FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000485. by Oliver C. Redfern, Benoît H. Dessailly, Timothy J. Dallman, Ian Sillitoe, Christine A. Orengo posted to proteinstructure functionprediction by TRHvidsten on 2009-08-30 21:17:02 as along with 3 people and 1 group CorinYeats kiekyon neils Orengo Group Journal Picks
	The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (3 July 2009), e1000431. by The Reference Genome Group of the Gene Ontology Consortium posted to functionprediction by TRHvidsten on 2009-07-03 22:08:15 as along with 20 people and 2 groups Zephyrus bertelsen rdiaz ptrobajo fgibson NickFurnham guhjy VGreiff cabbagesofdoom Keywan druvus natstreet gjuggler biomcgary polivares tfuji dswan kiekyon djkt daforerog Bioinformatics Journal picks
	Gene ontology functional annotations at the structural domain level [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 3. (2009), pp. 598-607. by Daniel Lopez, Florencio Pazos posted to functionprediction by TRHvidsten on 2009-07-01 07:20:01 as along with 1 person and 1 group AliC Orengo Group Journal Picks
	A global meta-analysis of microarray expression data to predict unknown gene functions and estimate the literature-data divide [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1694-1701. by Jonathan D. Wren posted to functionprediction geneexpression by TRHvidsten on 2009-06-18 08:30:01 as along with 11 people and 2 groups bsamal jfr jperkins fenghezi guhjy renatomilani VGreiff mitko dswan daforerog shikin Orengo Group Journal Picks Bioinformatics
	A critical assessment of Mus musculus gene function prediction using integrated genomic evidence [My Copy] Genome Biology, Vol. 9, No. Suppl 1. (2008), S2. by Lourdes P. Castillo, Murat Tasan, Chad Myers, et al.Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Lin, Gabriel Berriz, Francis Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David Hill, David W. Farley, Chris Grouios, Debajyoti Ray, Judith Blake, Minghua Deng, Michael Jordan, William Noble, Quaid Morris, Judith K. Seetharaman, Ziv B. Joseph, Ting Chen, Fengzhu Sun, Olga Troyanskaya, Edward Marcotte, Dong Xu, Timothy Hughes, Frederick Roth posted to functionprediction networks by carlk on 2009-04-27 05:39:20 as along with 6 people phoenixzxl saket kgutwin ptrobajo guhjy aconesa
	Network-guided genetic screening: building, testing and using gene networks to predict gene function. [My Copy] Briefings in functional genomics & proteomics, Vol. 7, No. 3. (29 May 2008), pp. 217-227. by B. Lehner, I. Lee posted to functionprediction by TRHvidsten on 2009-04-25 13:08:44 as along with 4 people and 1 group bertelsen thegoose2 tharris guhjy C. elegans / WormBase
	Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. [My Copy] Genome research, Vol. 14, No. 6. (June 2004), pp. 1107-1118. by Haiyuan Yu, Nicholas M. Luscombe, Hao Xin X. Lu, et al.Xiaowei Zhu, Yu Xia, Jing-Dong D. Han, Nicolas Bertin, Sambath Chung, Marc Vidal, Mark Gerstein posted to crossspecies fly functionprediction worm yeast by carlk on 2009-03-10 20:54:17 as along with 12 people and 1 group kiekyon rsaito thegoose2 robfsouza tharris bicko dragonrez chad_davis balajis koller cjeans cerca C. elegans / WormBase
	Discovering functional interaction patterns in protein-protein interaction networks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Mehmet Turanalp, Tolga Can posted to functionprediction motifs network networks protein by carlk on 2009-02-24 16:38:10 as along with 6 people and 1 group cerca guhjy maralena Tingting renatomilani aprildh31 Proteasome
	Changes in connectivity profiles define functionally distinct regions in human medial frontal cortex. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 36. (7 September 2004), pp. 13335-13340. by H. Johansen-Berg, T. E. Behrens, M. D. Robson, et al.I. Drobnjak, M. F. Rushworth, J. M. Brady, S. M. Smith, D. J. Higham, P. M. Matthews posted to brain functionprediction networks by carlk on 2008-10-28 03:04:21 as along with 1 person memphisphil
	Functional topology in a network of protein interactions. [My Copy] Bioinformatics, Vol. 20, No. 3. (12 February 2004), pp. 340-348. by N. Przulj, D. A. Wigle, I. Jurisica posted to functionprediction modules networks by carlk on 2008-06-16 21:59:07 as along with 8 people and 1 group liaofeng cerca sergiun jiny dragonrez kuhn lfriedl maralena kdl
	Functional annotation of regulatory pathways [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i377-386. by Jayesh Pandey, Mehmet Koyuturk, Yohan Kim, Wojciech Szpankowski, Shankar Subramaniam, Ananth Grama posted to functionprediction go networks by carlk on 2008-06-16 21:56:24 as along with 2 people and 1 group guhjy ealloza BioinfoCIPF
	Semantic integration to identify overlapping functional modules in protein interaction networks [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (24 July 2007), 265. by Young R. Cho, Woochang Hwang, Murali Ramanathan, Aidong Zhang posted to algorithms functionprediction networks by carlk on 2008-06-15 19:47:47 as along with 4 people guhjy tmmurali grahamc AbnerCYH
	Prediction of protein function using protein-protein interaction data. [My Copy] J Comput Biol, Vol. 10, No. 6. (2003), pp. 947-960. by M. Deng, K. Zhang, S. Mehta, T. Chen, F. Sun posted to functionprediction machinelearning networks tmpcite1 by carlk on 2008-06-15 18:51:35 as along with 4 people cerca roys satsumakenji iris_2001
	Topological structure analysis of the protein-protein interaction network in budding yeast [My Copy] Nucl. Acids Res., Vol. 31, No. 9. (1 May 2003), pp. 2443-2450. by Dongbo Bu, Yi Zhao, Lun Cai, et al.Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, Runsheng Chen posted to algorithms functionprediction moduledetection modules tmpcite1 yeast by carlk on 2008-06-15 18:48:28 as along with 6 people and 1 group jmenche lfriedl cjeans iris_2001 minostro ellakat kdl
	A statistical framework for genomic data fusion. [My Copy] Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635. by G. R. Lanckriet, T. De Bie, N. Cristianini, M. I. Jordan, W. S. Noble posted to functionprediction kernels machinelearning networks tmpcite1 by carlk on 2008-06-15 18:40:15 as along with 8 people isimpson dragonrez tmmurali jfr mbeautru nedwards ptrobajo mdstobbe
	Kernel-based data fusion and its application to protein function prediction in yeast. [My Copy] Pac Symp Biocomput (2004), pp. 300-311. by G. R. Lanckriet, M. Deng, N. Cristianini, M. I. Jordan, W. S. Noble posted to functionprediction kernels machinelearning networks tmpcite1 by carlk on 2008-06-15 18:39:29 as along with 3 people fabgoos dragonrez jccaicedo
	Diffusion Kernels on Graphs and Other Discrete Input Spaces [My Copy] In ICML '02: Proceedings of the Nineteenth International Conference on Machine Learning (2002), pp. 315-322. by Risi I. Kondor, John D. Lafferty posted to functionprediction networks tmpcite1 by carlk on 2008-06-15 18:37:12 as along with 1 person tmmurali
	Learning kernels from biological networks by maximizing entropy. [My Copy] Bioinformatics, Vol. 20 Suppl 1 (4 August 2004) by K. Tsuda, W. S. Noble posted to functionprediction networks tmpcite1 by carlk on 2008-06-15 18:35:40 as along with 5 people and 4 groups ajbattle ihpark bioinfo jwdietrich jccaicedo MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
	Annotating pathways in interaction networks. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 153-165. by J. Pandey, M. Koyutürk, W. Szpankowski, A. Grama posted to functionprediction networks by carlk on 2008-06-15 17:52:58 as along with 1 person cswinburne
	The art of gene function prediction [My Copy] Nature Biotechnology, Vol. 24, No. 12. (2006), pp. 1474-1475. by T. M. Murali, Chang-Jiun Wu, Simon Kasif posted to functionprediction moduledetection modules networks tmpcite1 by carlk on 2008-06-15 17:50:54 as along with 2 people mitko j3xucite
	Protein classification using probabilistic chain graphs and the Gene Ontology structure [My Copy] Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1871-1878. by Steven Carroll, Vladimir Pavlovic posted to functionprediction go networks tmpcite1 by carlk on 2008-06-14 04:23:50 as
	Annotating proteins by mining protein interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 14. (15 July 2006) by M. Kirac, G. Ozsoyoglu, J. Yang posted to functionprediction go modules networks tmpcite1 by carlk on 2008-06-14 04:21:18 as along with 1 person jiny
	Predicting protein functions from redundancies in large-scale protein interaction networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 22. (28 October 2003), pp. 12579-12583. by M. P. Samanta, S. Liang posted to functionprediction network tmpcite1 by carlk on 2008-06-12 22:38:20 as along with 2 people jiny wnpx
	Functional and topological characterization of protein interaction networks. [My Copy] Proteomics, Vol. 4, No. 4. (April 2004), pp. 928-942. by Soon-Hyung H. Yook, Zoltán N. Oltvai, Albert-László L. Barabási posted to functionprediction networks by carlk on 2008-06-12 22:37:41 as along with 8 people chica lawraga snuppepuppan textoris gabrielr alexg grahamc iris_2001
	An efficient strategy for extensive integration of diverse biological data for protein function prediction. [My Copy] Bioinformatics (28 November 2007) by Hon Nian N. Chua, Wing-Kin K. Sung, Limsoon Wong posted to functionprediction integration networks by carlk on 2008-06-12 22:30:35 as along with 4 people tmmurali grahamc bootsy guhjy
	The use of gene clusters to infer functional coupling. [My Copy] Proc Natl Acad Sci U S A, Vol. 96, No. 6. (16 March 1999), pp. 2896-2901. by R. Overbeek, M. Fonstein, M. D'Souza, G. D. Pusch, N. Maltsev posted to functionprediction by carlk on 2008-06-12 22:27:55 as along with 2 people cgaugain balajis
	Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae. [My Copy] OMICS, Vol. 8, No. 4. (2004), pp. 322-333. by T. Joshi, Y. Chen, J. M. Becker, N. Alexandrov, D. Xu posted to functionprediction integration by carlk on 2008-06-12 18:54:17 as along with 2 people and 1 group lfriedl balajis kdl
	Exploiting indirect neighbours and topological weight to predict protein function from proteinprotein interactions [My Copy] Bioinformatics, Vol. 22, No. 13. (1 July 2006), pp. 1623-1630. by Chua, Hon Nian, Sung, Wing-Kin, Wong, Limsoon posted to functionprediction networks by carlk on 2008-06-12 18:03:16 as along with 3 people and 1 group AbnerCYH jiny lfriedl kdl
	Assessment of prediction accuracy of protein function from protein--protein interaction data. [My Copy] Yeast, Vol. 18, No. 6. (April 2001), pp. 523-531. by H. Hishigaki, K. Nakai, T. Ono, A. Tanigami, T. Takagi posted to functionprediction networks by carlk on 2008-06-12 17:59:04 as along with 3 people cerca shivaram jiny
	Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 8. (13 April 1999), pp. 4285-4288. by Matteo Pellegrini, Edward M. Marcotte, Michael J. Thompson, David Eisenberg, Todd O. Yeates posted to functionprediction by carlk on 2008-06-12 17:32:59 as along with 15 people and 1 group calderonv jperkins pablocarb chica skembel Robinder dragonrez bicko lfriedl balajis opheliav tny ruvido winterschlaefer shung kdl
	A combined algorithm for genome-wide prediction of protein function. [My Copy] Nature, Vol. 402, No. 6757. (4 November 1999), pp. 83-86. by E. M. Marcotte, M. Pellegrini, M. J. Thompson, T. O. Yeates, D. Eisenberg posted to functionprediction integration by carlk on 2008-06-12 17:27:20 as along with 7 people and 1 group jperkins dragonrez Robinder shivaram lfriedl ruvido cjeans kdl
	Genome-scale protein function prediction in yeast Saccharomyces cerevisiae through integrating multiple sources of high-throughput data. [My Copy] Pac Symp Biocomput (2005), pp. 471-482. by Y. Chen, D. Xu posted to functionprediction integration by carlk on 2008-06-12 17:10:26 as along with 5 people and 2 groups tmmurali okarsligil lfriedl balajis wnpx kdl Bioinformatics
	Hierarchical multi-label prediction of gene function. [My Copy] Bioinformatics (12 January 2006) by Zafer Barutcuoglu, Robert E E. Schapire, Olga G G. Troyanskaya posted to functionprediction go by carlk on 2008-06-12 17:06:55 as along with 3 people and 1 group tsoumakas uknandal grahamc Multilabel Classification
	Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. [My Copy] Bioinformatics, Vol. 21 Suppl 1 (1 June 2005) by E. Nabieva, K. Jim, A. Agarwal, B. Chazelle, M. Singh posted to functionprediction networks by carlk on 2008-06-12 17:05:12 as along with 7 people and 2 groups tmmurali okarsligil lfriedl wnpx j3xucite jiny Pao-Yang kdl Bioinformatics
	MINT: a Molecular INTeraction database. [My Copy] FEBS Lett, Vol. 513, No. 1. (20 February 2002), pp. 135-140. by A. Zanzoni, L. Montecchi-Palazzi, M. Quondam, G. Ausiello, M. Helmer-Citterich, G. Cesareni posted to databases functionprediction by carlk on 2008-06-12 15:02:51 as along with 2 people blackbart gurkanbebek
	Gene Ontology: tool for the unification of biology [My Copy] Nature Genetics, Vol. 25, No. 1. (01 May 2000), pp. 25-29. by Michael Ashburner, Catherine A. Ball, Judith A. Blake, et al.David Botstein, Heather Butler, J. Michael Cherry, Allan P. Davis, Kara Dolinski, Selina S. Dwight, Janan T. Eppig, Midori A. Harris, David P. Hill, Laurie Issel-Tarver, Andrew Kasarskis, Suzanna Lewis, John C. Matese, Joel E. Richardson, Martin Ringwald, Gerald M. Rubin, Gavin Sherlock posted to functionprediction go by carlk on 2008-06-12 14:45:13 as along with 77 people and 8 groups krapnik suizan sanchezbuelna Jporci artaban421 mtaschuk niallhaslam Zephyrus nicklynch mauriceccy pmendes jperkins timhubbard ipark-kaist jeremymiller vkwn MarcoAlvarez humburg mqbphcw3 kiekyon karinlag ocs marti robert85 allysonlister daforerog chasmand lawraga jorisslob bertelsen mshossain ajbattle paszkows coela fbristow kshameer anthropomorphism nolodie dagmar Robinder verdicchio raistrick vertikalist aalibes miguel dragonrez lfriedl chad_davis yas balajis indigoviolet benny dullhunk nirfriedman fisherp caporaso helliontroy zlu gurkanbebek djkt massivemayhem incovoma leechuck aconesa sgoetz javamint bootsy PunkRock natstreet naegele CitoJam pablomendes marck dgront roys rvosa fongenae 8_01 BTS-PT-AS-CS kdl Bioinformatics EisenLab T_lab biomedical-nlp FAB-lab
	Global protein function prediction from protein-protein interaction networks. [My Copy] Nat Biotechnol, Vol. 21, No. 6. (June 2003), pp. 697-700. by A. Vazquez, A. Flammini, A. Maritan, A. Vespignani posted to algorithms functionprediction networks by carlk on 2008-06-12 14:40:44 as along with 10 people chica davidecellai aprildh31 jiny shivaram eweaver gcalda grahamc iris_2001 maralena
	Benchmarking protein classification algorithms via supervised cross-validation. [My Copy] Journal of biochemical and biophysical methods, Vol. 70, No. 6. (24 April 2008), pp. 1215-1223. by A. Kertész-Farkas, S. Dhir, P. Sonego, et al.M. Pacurar, S. Netoteia, H. Nijveen, A. Kuzniar, J. A. Leunissen, A. Kocsor, S. Pongor posted to bad functionprediction go by carlk on 2008-06-10 20:45:38 as
	Predicting gene ontology functions from protein's regional surface structures [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Zhi P. Liu, Ling Y. Wu, Yong Wang, Luonan Chen, Xiang S. Zhang posted to functionprediction structure by carlk on 2008-06-10 19:56:48 as along with 2 people tjimenez neils
	Denoising inferred functional association networks obtained by gene fusion analysis [My Copy] BMC Genomics, Vol. 8 (14 December 2007), 460. by Atanas Kamburov, Leon Goldovsky, Shiri Freilich, et al.Aliki Kapazoglou, Victor Kunin, Anton J. Enright, Athanasios Tsaftaris, Christos A. Ouzounis posted to functionprediction networks noise by carlk on 2008-06-10 19:55:48 as
	Predicting domain-domain interactions using a parsimony approach [My Copy] Genome Biology, Vol. 7, No. 11. (09 November 2006), R104. by Katia Guimaraes, Raja Jothi, Elena Zotenko, Teresa Przytycka posted to domains functionprediction networks optimization by carlk on 2008-06-05 19:33:29 as along with 6 people dfdong qluo marti cerca phoenixzxl saket
	On Steiner Versions of (bi)Connectivity in Network Problems [My Copy] Graphs and Combinatorics, Vol. 20, No. 2. (1 June 2004), pp. 263-273. by A. Volgenant, C. W. Duin posted to functionprediction networks steiner by carlk on 2008-05-30 17:32:34 as
	Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction [My Copy] Current Opinion in Microbiology, Vol. 7, No. 5. (October 2004), pp. 535-545. by R. Jansen, M. Gerstein posted to functionprediction networks standard by carlk on 2008-05-29 20:04:29 as along with 6 people and 2 groups flbarroso okarsligil lfriedl wnpx neils grahamc kdl Bioinformatics
	Function prediction and protein networks. [My Copy] Curr Opin Cell Biol, Vol. 15, No. 2. (April 2003), pp. 191-198. by M. A. Huynen, B. Snel, C. von Mering, P. Bork posted to functionprediction networks review by carlk on 2008-05-29 20:03:55 as along with 5 people and 1 group cerca lfriedl balajis lyongu bootsy kdl
	The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes [My Copy] Nucl. Acids Res., Vol. 32, No. 18. (14 October 2004), pp. 5539-5545. by Andreas Ruepp, Alfred Zollner, Dieter Maier, et al.Kaj Albermann, Jean Hani, Martin Mokrejs, Igor Tetko, Ulrich Guldener, Gertrud Mannhaupt, Martin Munsterkotter, H. Werner Mewes posted to functionprediction go networks by carlk on 2008-05-29 20:00:40 as along with 6 people and 1 group poirel thegoose udivi tsoumakas gurkanbebek ichbins81 Multilabel Classification
	Finding function: evaluation methods for functional genomic data [My Copy] BMC Genomics, Vol. 7 (25 July 2006), 187. by Chad L. Myers, Daniel R. Barrett, Matthew A. Hibbs, Curtis Huttenhower, Olga G. Troyanskaya posted to functionprediction go networks standard by carlk on 2008-05-29 20:00:00 as along with 8 people and 2 groups saket tjimenez jfr smbaxtersf grahamc dejori marck cerca ic4 generif_paper
	Discovery of biological networks from diverse functional genomic data. [My Copy] Genome Biol, Vol. 6, No. 13. (2005) by C. L. Myers, D. Robson, A. Wible, et al.M. A. Hibbs, C. Chiriac, C. L. Theesfeld, K. Dolinski, O. G. Troyanskaya posted to functionprediction networks by carlk on 2008-05-29 19:59:40 as along with 5 people roys dragonrez cswinburne grahamc AbnerCYH

Note: You may cite this page as: http://www.citeulike.org/tag/functionprediction

Result page: 1 2 Next

networks	73
go	19
modules	12
tmpcite1	12
algorithms	8
integration	8
machinelearning	6
moduledetection	6
yeast	6
protein	5
review	5
kernels	4
network	4
standard	4
brain	2
comparison	2
crossspecies	2
duplications	2
fly	2
geneexpression	2
motifs	2
pathways	2
steiner	2
worm	2
bad	1
classification	1
databases	1
domains	1
graphtheory	1
noise	1
optimization	1
proteininteractions	1
proteinstructure	1
structure	1
svm	1
wabi09	1

Tag functionprediction [66 articles] Export

Related Tags