Tag gene-list [98 articles] Export

Recent papers classified by the tag gene-list.

	Molecular research technologies in mitochondrial diseases: The microarray approach [My Copy] IUBMB Life, Vol. 57, No. 12. (December 2005), pp. 811-818. by Marco Crimi, Sean F. O'Hearn, Douglas C. Wallace, Giacomo P. Comi posted to review mitochondria microarray gene-list gene-expression by Zephyrus on 2009-12-08 02:40:38 as
	Tilting at Quixotic Trait Loci (QTL): An Evolutionary Perspective on Genetic Causation [My Copy] Genetics In Genetics, Vol. 179, No. 4. (1 August 2008), pp. 1741-1756. by Kenneth M. Weiss posted to new-wave mitochondria interesting genetic-epidemiology gene-list evolution by Zephyrus on 2009-12-06 02:25:10 as along with 2 people and 1 group buyske ArtemPankin Khavkin's lab
	A potential molecular link between aerobic glycolysis and cancer. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 5, No. 4. (February 2006), pp. 343-344. by David Manka, David E. Millhorn posted to review hypothesis glycolysis gene-list cancer by Zephyrus on 2009-12-03 19:56:09 as
	Breast carcinomas fulfill the Warburg hypothesis and provide metabolic markers of cancer prognosis [My Copy] Carcinogenesis In Carcinogenesis, Vol. 26, No. 12. (1 December 2005), pp. 2095-2104. by Antonio Isidoro, Enrique Casado, Andres Redondo, et al.Paloma Acebo, Enrique Espinosa, Andres M. Alonso, Paloma Cejas, David Hardisson, Juan A. Fresno Vara, Cristobal Belda-Iniesta, Manuel Gonzalez-Baron, Jose M. Cuezva posted to warburg hypothesis gene-list cancer breast by Zephyrus on 2009-12-03 19:36:39 as
	An enhanced MITOMAP with a global mtDNA mutational phylogeny. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007), pp. D823-D828. by Eduardo Ruiz-Pesini, Marie T. Lott, Vincent Procaccio, et al.Jason C. Poole, Marty C. Brandon, Dan Mishmar, Christina Yi, James Kreuziger, Pierre Baldi, Douglas C. Wallace posted to mtdna mitomap mitochondria gene-list database by Zephyrus on 2009-11-30 07:15:16 as
	Mutations in human nuclear genes encoding for subunits of mitochondrial respiratory complex I: the NDUFS4 gene [My Copy] Gene, Vol. 286, No. 1. (6 March 2002), pp. 149-154. by V. Petruzzella posted to mrc mitochondria genome gene-list by Zephyrus on 2009-11-30 06:56:27 as
	Nuclear Genes That Encode Mitochondrial Proteins for DNA and RNA Metabolism Are Clustered in the Arabidopsis Genome [My Copy] Plant Cell, Vol. 15, No. 7. (1 July 2003), pp. 1619-1631. by Annakaisa Elo, Anna Lyznik, Delkin O. Gonzalez, Stephen D. Kachman, Sally A. Mackenzie posted to mtdna genome gene-list by Zephyrus on 2009-11-30 03:35:02 as
	Comprehensive analysis of common mitochondrial DNA variants and colorectal cancer risk [My Copy] British Journal of Cancer, Vol. 99, No. 12. (02 December 2008), pp. 2088-2093. by E. Webb, P. Broderick, I. Chandler, et al.S. Lubbe, S. Penegar, I. P. M. Tomlinson, R. S. Houlston posted to mtdna gene-list crosshatch colorectal cancer by Zephyrus on 2009-11-29 00:33:36 as
	Mitochondrial DNA variant interactions modify breast cancer risk [My Copy] Journal of Human Genetics, Vol. 53, No. 10. (19 August 2008), pp. 924-928. by Daniel Covarrubias, Ren-Kui Bai, Lee-Jun C. Wong, Suzanne M. Leal posted to risk mitochondria interaction gene-list cancer breast by Zephyrus on 2009-11-28 08:55:36 as
	Sequence variations of mitochondrial DNA D-loop region are highly frequent events in familial breast cancer [My Copy] Journal of Biomedical Science, Vol. 15, No. 4. (1 July 2008), pp. 535-543. by Man Yu, Yurong Shi, Fei Zhang, et al.Yunli Zhou, Yi Yang, Xiyin Wei, Lin Zhang, Ruifang Niu posted to mtdna gene-list familial d-loop cancer breast by Zephyrus on 2009-11-28 08:52:41 as
	The role of mitochondrial haplogroups in glaucoma: a study in an Arab population. [My Copy] Molecular vision, Vol. 14 (2008), pp. 518-522. by Khaled K. Abu-Amero, Jose Morales, Thomas M. Bosley, Gamal H. Mohamed, Vicente M. Cabrera posted to mtdna glaucoma gene-list crosshatch by Zephyrus on 2009-11-28 06:00:52 as
	Is Mitochondrial DNA Variation Associated with Sporadic Breast Cancer Risk? [My Copy] Cancer Res, Vol. 68, No. 2. (15 January 2008), pp. 623-625. by Ana Mosquera-Miguel, Vanesa Alvarez-Iglesias, Angel Carracedo, et al.Antonio Salas, Ana Vega, Angel Carracedo, Roger Milne, Antonio C. de Leon, Javier Benitez, Angel Carracedo, Antonio Salas posted to mtdna mitochondria gene-list cancer breast by Zephyrus on 2009-11-28 05:58:29 as
	High rate of mutation in mitochondrial DNA displacement loop region in human colorectal cancer. [My Copy] Diseases of the colon and rectum, Vol. 52, No. 3. (March 2009), pp. 526-530. by Mansoureh Akouchekian, Massoud Houshmand, Simin Hemati, Mohammad Ansaripour, Mehdi Shafa posted to mtdna gene-list colorectal cancer by Zephyrus on 2009-11-28 01:21:56 as
	Novel Susceptibility Loci for Second Primary Tumors/Recurrence in Head and Neck Cancer Patients: Large-Scale Evaluation of Genetic Variants [My Copy] Cancer Prev Res, Vol. 2, No. 7. (1 July 2009), pp. 617-624. by Xifeng Wu, Margaret R. Spitz, Jack J. Lee, et al.Scott M. Lippman, Yuanqing Ye, Hushan Yang, Fadlo R. Khuri, Edward Kim, Jian Gu, Reuben Lotan, Waun K. Hong posted to mitochondria head-and-neck gene-list by Zephyrus on 2009-11-28 01:16:27 as
	Mitochondrial Haplogroups and Control Region Polymorphisms Are Not Associated with Prostate Cancer in Middle European Caucasians [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6370. by Edith E. Mueller, Waltraud Eder, Johannes A. Mayr, et al.Bernhard Paulweber, Wolfgang Sperl, Wolfgang Horninger, Helmut Klocker, Barbara Kofler posted to prostate mtdna haplogroups gene-list cancer by Zephyrus on 2009-11-25 06:40:41 as
	Mitochondrial DNA content in paired normal and cancerous breast tissue samples from patients with breast cancer [My Copy] Journal of Cancer Research and Clinical Oncology, Vol. 135, No. 8. (1 August 2009), pp. 983-989. by Alex Fan, Ramin Radpour, Mahdi Haghighi, et al.Corina Kohler, Peng Xia, Sinuhe Hahn, Wolfgang Holzgreve, Xiao Zhong posted to tissue mtdna measurement levels gene-list breast by Zephyrus on 2009-11-25 06:28:43 as
	The pathophysiology of mitochondrial disease as modeled in the mouse [My Copy] Genes & Development, Vol. 23, No. 15. (1 August 2009), pp. 1714-1736. by Douglas C. Wallace, WeiWei Fan posted to mouse-model mitochondria gene-list by Zephyrus on 2009-11-25 06:23:47 as along with 1 person mkotlyar
	Regulation of mitochondrial respiratory chain biogenesis by estrogens/estrogen receptors and physiological, pathological and pharmacological implications [My Copy] Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Vol. 1793, No. 10. (23 October 2009), pp. 1540-1570. by Jin-Qiang Chen,, Patrick .. Cammarata,, Christopher .. Baines,, James .. Yager, posted to respiratory-chain new-wave mitochondria gene-list estrogen cancer breast apoptosis by Zephyrus on 2009-11-24 22:01:50 as
	Mitochondrial Genetic Background Modifies Breast Cancer Risk [My Copy] Cancer Res, Vol. 67, No. 10. (15 May 2007), pp. 4687-4694. by Ren-Kui Bai, Suzanne M. Leal, Daniel Covarrubias, Aiyi Liu, Lee-Jun C. Wong posted to mitochondria gene-list cancer breast by Zephyrus on 2009-11-24 21:53:06 as
	Next generation software for functional trend analysis [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3043-3044. by Gabriel F. Berriz, John E. Beaver, Can Cenik, Murat Tasan, Frederick P. Roth posted to ma gene-list bioinf by guhjy on 2009-09-10 03:44:37 as along with 4 people and 1 group jperkins tmmurali kmdaily VGreiff Orengo Group Journal Picks
	CLEAN: CLustering Enrichment ANalysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (29 July 2009), 234. by Johannes Freudenberg, Vineet Joshi, Zhen Hu, Mario Medvedovic posted to gene-list by guhjy on 2009-08-06 10:36:38 as along with 9 people zufar brianb nuin rdiaz dswan frohike RamuAnandakrishnan barriot renatomilani
	Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2348-2354. by Galina V. Glazko, Frank Emmert-Streib posted to gene-list ma stats by guhjy on 2009-07-20 03:43:20 as along with 8 people shikin zufar rdiaz brianb m509396 dswan natstreet neils
	GAGE: generally applicable gene set enrichment for pathway analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 161. by Weijun Luo, Michael Friedman, Kerby Shedden, Kurt Hankenson, Peter Woolf posted to gene-list pathway by guhjy on 2009-07-20 03:42:01 as along with 13 people and 2 groups bertelsen dipenps sotacam GustavoLacerda dswan ptrobajo VGreiff thegoose vinithepooh kshameer renatomilani cassj stajich Bioinformatics Mycology
	Multivariate analysis of variance test for gene set analysis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 897-903. by Chen-An A. Tsai, James J. Chen posted to gene-list stats by guhjy on 2009-07-20 03:16:45 as along with 7 people jfr tonamswish natstreet dswan imina rdiaz thomaskelder
	Extensions to gene set enrichment. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 3. (1 February 2007), pp. 306-313. by Zhen Jiang, Robert Gentleman posted to gene-list by guhjy on 2009-07-18 02:12:31 as along with 12 people and 1 group ptrobajo tonamswish ipark-kaist jfr aviad_work ihpark ealloza djkt waghsk heliopais giovenko magusina BioinfoCIPF
	A general modular framework for gene set enrichment analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (03 February 2009), 47. by Marit Ackermann, Korbinian Strimmer posted to gsea ma gene-list by guhjy on 2009-07-08 04:35:10 as along with 17 people and 1 group ptrobajo zufar srp33 vingron dipenps shikin arjun_citeulike pk506 aviad_work thomaskelder ydhwang rdiaz kshameer renatomilani dswan cmzmasek RamuAnandakrishnan Bioinformatics
	Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W340-344. by Ignacio Medina, David Montaner, Nuria Bonifaci, et al.Miguel Angel A. Pujana, José Carbonell, Joaquin Tarraga, Fatima Al-Shahrour, Joaquin Dopazo posted to gsea gwa pathway snp gene-list by guhjy on 2009-06-24 03:36:00 as along with 6 people shikin zufar daed ptrobajo daforerog kimorley
	BioconductorBuntu - A Linux Distribution that Implements a Web-Based DNA Microarray Analysis Server [My Copy] Bioinformatics (23 March 2009), btp165. by Paul Geeleher, Dermot Morris, John P. Hinde, Aaron Golden posted to linux r gene-list by guhjy on 2009-06-21 13:12:08 as along with 8 people and 1 group jfr dswan djkt chrisamiller renatomilani phoenixzxl natstreet druvus Bioinformatics
	MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression [My Copy] Nucl. Acids Res., Vol. 37, No. Web Server issue. (6 May 2009), pp. gkp294-362. by Seungyoon Nam, Meng Li, Kwangmin Choi, Curtis Balch, Sun Kim, Kenneth P. Nephew posted to gene-list mirna website by guhjy on 2009-06-03 14:45:25 as along with 6 people and 3 groups PabloMarin dswan nuin heliopais ealloza daforerog Journal picks Bioinformatics microRNA
	ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), gkp427. by Jing Chen, Eric E. Bardes, Bruce J. Aronow, Anil G. Jegga posted to candidate-gene ma snp gene-list by guhjy on 2009-05-29 11:22:21 as along with 5 people jfr pininforthefjords daforerog operon psique
	GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information [My Copy] Nucleic acids research In Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W317-322. by Ruben Nogales-Cadenas, Pedro Carmona-Saez, Miguel Vazquez, et al.Cesar Vicente, Xiaoyuan Yang, Francisco Tirado, Jose M. Carazo, Alberto Pascual-Montano posted to gene-list ma software by guhjy on 2009-05-29 04:27:01 as along with 6 people bsamal natstreet daforerog psique pininforthefjords renatomilani
	ASTD: The Alternative Splicing and Transcript Diversity database. [My Copy] Genomics, Vol. 93, No. 3. (March 2009), pp. 213-220. by Gautier Koscielny, Vincent Le Texier, Chellappa Gopalakrishnan, et al.Vasudev Kumanduri, Jean-Jack J. Riethoven, Francesco Nardone, Eleanor Stanley, Christine Fallsehr, Oliver Hofmann, Meelis Kull, Eoghan Harrington, Stéphanie Boué, Eduardo Eyras, Mireya Plass, Fabrice Lopez, William Ritchie, Virginie Moucadel, Takeshi Ara, Heike Pospisil, Alexander Herrmann, Jens G Reich, Roderic Guigó, Peer Bork, Magnus von Knebel K. Doeberitz, Jaak Vilo, Winston Hide, Rolf Apweiler, Thangavel Alphonse A. Thanaraj, Daniel Gautheret posted to ad db gene-list by guhjy on 2009-05-16 08:17:40 as along with 1 person ongenetics
	Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e108-116. by Elena Edelman, Alessandro Porrello, Justin Guinney, et al.Bala Balakumaran, Andrea Bild, Phillip G. Febbo, Sayan Mukherjee posted to ma software gene-list by guhjy on 2009-05-15 05:31:32 as along with 9 people and 1 group ipark-kaist aviad_work ptrobajo dragonrez jfr frohike heliopais barriot srp33 Bioinformatics
	COFECO: composite function annotation enriched by protein complex data. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), gkp331. by C. H. Sun, M. S. Kim, Y. Han, G. S. Yi posted to annotation gene-list go protein-complex by guhjy on 2009-05-09 13:51:50 as
	GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W323-328. by Alexey V. Antonov, Sabine Dietmann, Philip Wong, Dominik Lutter, Hans W. Mewes posted to ma mirna gene-list by guhjy on 2009-05-09 13:45:59 as along with 4 people and 1 group GustavoLacerda dswan ealloza daforerog Bioinformatics
	A new regularized least squares support vector regression for gene selection [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (03 February 2009), 44. by Pei C. Chen, Su Y. Huang, Wei Chen, Chuhsing Hsiao posted to ma stats tw gene-list by guhjy on 2009-05-09 13:37:50 as along with 4 people dipenps jfr rdiaz behindtherabbit
	Gene set internal coherence in the context of functional profiling [My Copy] BMC Genomics, Vol. 10, No. 1. (27 April 2009), 197. by David Montaner, Pablo Minguez, Fatima A. Shahrour, Joaquin Dopazo posted to gsea ma gene-list by guhjy on 2009-05-05 09:42:12 as along with 3 people dipenps ipark-kaist barriot
	WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W329-334. by Daniel Glez-Pena, Gonzalo Gomez-Lopez, David G. Pisano, Florentino Fdez-Riverola posted to gsea ma software gene-list by guhjy on 2009-05-05 09:25:43 as along with 5 people burak frohike yaredo daforerog renatomilani
	GS2: an efficiently computable measure of GO-based similarity of gene sets [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1178-1184. by Troy Ruths, Derek Ruths, Luay Nakhleh posted to go ma gene-list by guhjy on 2009-05-05 09:20:29 as along with 4 people MarcoAlvarez sgoetz chrisamiller nuin
	CORNA: testing gene lists for regulation by microRNAs [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 832-833. by X. Wu, M. Watson posted to gene-list mirna r by guhjy on 2009-05-04 05:42:10 as along with 10 people and 2 groups VR lwaldron jfr Stew djkt nuin imina natstreet druvus mhamada microRNA Bioinformatics - CRUK
	The DICS repository: module-assisted analysis of disease-related gene lists. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 830-831. by Sabine Dietmann, Elisabeth Georgii, Alexey Antonov, Koji Tsuda, Hans-Werner W. Mewes posted to candidate-gene ma ppi gene-list by guhjy on 2009-03-17 09:00:04 as along with 2 people jfr imina
	Formulating and testing hypotheses in functional genomics. [My Copy] Artificial intelligence in medicine (11 September 2008) by Joaquin Dopazo posted to genomics software stats gene-list by guhjy on 2009-03-16 02:43:32 as along with 1 person jfr
	Mitochondrial NADH-dehydrogenase subunit 3 (ND3) polymorphism (A10398G) and sporadic breast cancer in Poland [My Copy] Breast Cancer Research and Treatment In Breast Cancer Research and Treatment (6 March 2009) by Anna M. Czarnecka, Tomasz Krawczyk, Marek Zdrożny, et al.Jan Lubiński, Rebecca S. Arnold, Wojciech Kukwa, Anna Ścińska, Paweł Golik, Ewa Bartnik, John A. Petros posted to thelist polymorphism poland mitochondria gene-list cancer breast by Zephyrus on 2009-03-13 20:02:35 as
	Effects of Dietary Energy Restriction on Gene Regulation in Mammary Epithelial Cells [My Copy] Cancer Res In Cancer Res, Vol. 67, No. 24. (15 December 2007), pp. 12018-12025. by Zongjian Zhu, Weiqin Jiang, John N. McGinley, Jennifer M. Price, Bifeng Gao, Henry J. Thompson posted to warburg thelist gene-list cancer breast by Zephyrus on 2009-03-13 14:57:41 as along with 1 person guhjy
	Regulation of the Warburg effect in early-passage breast cancer cells. [My Copy] Neoplasia (New York, N.Y.), Vol. 10, No. 8. (August 2008), pp. 745-756. by Ian F. Robey, Renu M. Stephen, Kathy S. Brown, Brenda K. Baggett, Robert A. Gatenby, Robert J. Gillies posted to warburg thelist gene-list cancer breast by Zephyrus on 2009-03-13 14:57:20 as
	GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. [My Copy] BMC bioinformatics, Vol. 10 (03 February 2009), 48. by Eran Eden, Roy Navon, Israel Steinfeld, Doron Lipson, Zohar Yakhini posted to go ma gene-list by guhjy on 2009-02-22 02:39:36 as along with 8 people and 1 group Effie RamuAnandakrishnan kshameer renatomilani grahamc cmzmasek paszkows jmeppley NaCTeM
	Sparse linear discriminant analysis for simultaneous testing for the significance of a gene set/pathway and gene selection [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1145-1151. by Michael C. Wu, Lingsong Zhang, Zhaoxi Wang, David C. Christiani, Xihong Lin posted to ma r stats gene-list by guhjy on 2009-02-20 05:28:50 as along with 4 people jfr praisan rdiaz ipark-kaist
	A flexible two-stage procedure for identifying gene sets that are differentially expressed. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1019-1025. by Ruth Heller, Elisabetta Manduchi, Gregory R. Grant, Warren J. Ewens posted to ma stats r gene-list by guhjy on 2009-02-20 04:59:59 as along with 6 people jfr zufar renatomilani dswan shikin rdiaz
	Module-Based Outcome Prediction Using Breast Cancer Compendia [My Copy] PLoS ONE In PLoS ONE, Vol. 2, No. 10. (17 October 2007), e1047. by Martin H. van Vliet, Christiaan N. Klijn, Lodewyk F. A. Wessels, Marcel J. T. Reinders posted to tools statistics methods gene-list gene-expression cancer breast at-war analysis by Zephyrus on 2009-02-17 02:34:55 as along with 4 people winterschlaefer jfr macavity1g ptrobajo
	A novel regulatory event-based gene set analysis method for exploring global functional changes in heterogeneous genomic data sets [My Copy] BMC Genomics, Vol. 10 (16 January 2009), 26. by Chien-Yi, Chi-Hung Lin posted to ma stats gene-list by guhjy on 2009-01-27 08:17:47 as along with 1 person jfr

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breast	12
software	12
mitochondria	11
mtdna	9
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r	5
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Tag gene-list [98 articles] Export

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