Register | Log in | FAQ      [?] 

Tag gene-prediction [51 articles]

Recent papers classified by the tag gene-prediction.
  • Improved microbial gene identification with GLIMMER.
    Nucleic Acids Res, Vol. 27, No. 23. (1 December 1999), pp. 4636-4641.
    by AL Delcher, D Harmon, S Kasif, O White, SL Salzberg
    posted to bioinformatics gene-prediction by ziquje on 2005-02-14 17:22:56 as ***** along with 4 people nedwards dquest gelack wenhan
  • Integrating genomic homology into gene structure prediction.
    Bioinformatics, Vol. 17 Suppl 1 (2001)
    by I Korf, P Flicek, D Duan, MR Brent
    posted to algorithm gene-prediction by indigoviolet on 2006-12-04 03:48:45 as ** along with 2 people and 1 group dullhunk wenhan EisenLab
  • Gene finding with a hidden Markov model of genome structure and evolution.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 219-227.
    by JS Pedersen, J Hein
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 10:24:55 as ** along with 3 people and 2 groups redelings stajich azazello EisenLab MBLAB
  • Using multiple alignments to improve gene prediction.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 379-393.
    by SS Gross, MR Brent
    posted to gene-prediction review by indigoviolet on 2007-07-15 13:54:12 as ** along with 1 person and 1 group wenhan EisenLab
  • Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.
    Bioinformatics (5 May 2007)
    by Avril Coghlan, Richard Durbin
    posted to algorithm gene-prediction by indigoviolet on 2007-11-07 10:19:18 as ** along with 5 people and 3 groups tharris druvus stajich GustavoLacerda dmc C. elegans / WormBase EisenLab Durbin group
  • notes Genome annotation assessment in Drosophila melanogaster.
    Genome Res, Vol. 10, No. 4. (April 2000), pp. 483-501.
    by MG Reese, G Hartzell, NL Harris, U Ohler, JF Abril, SE Lewis
    posted to annotation evaluation gene-prediction by indigoviolet on 2006-12-04 03:45:03 as ** along with 1 person and 1 group wenhan EisenLab
  • Human-mouse gene identification by comparative evidence integration and evolutionary analysis.
    Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1190-1202.
    by L Zhang, V Pavlovic, CR Cantor, S Kasif
    posted to algorithm gene-prediction by indigoviolet on 2007-11-29 03:28:55 as ** along with 1 person and 2 groups azazello EisenLab MBLAB
  • JIGSAW: integration of multiple sources of evidence for gene prediction
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3596-3603.
    by Jonathan E Allen, Steven L Salzberg
    posted to gene-prediction by indigoviolet on 2007-11-25 08:02:25 as ** along with 2 people and 1 group stajich wenhan EisenLab
  • Identification of protein coding regions in the human genome by quadratic discriminant analysis.
    Proc Natl Acad Sci U S A, Vol. 94, No. 2. (21 January 1997), pp. 565-568.
    by MQ Zhang
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:19:38 as ** along with 1 person and 1 group wenhan EisenLab
  • The conserved exon method for gene finding.
    Proc Int Conf Intell Syst Mol Biol, Vol. 8 (2000), pp. 3-12.
    by V Bafna, DH Huson
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 10:02:41 as ** along with 1 person and 2 groups wenhan EisenLab MBLAB
  • Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by M Arumugam, C Wei, RH Brown, MR Brent
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 10:46:38 as ** along with 1 person and 1 group wenhan EisenLab
  • Gene prediction with a hidden Markov model and a new intron submodel.
    Bioinformatics, Vol. 19 Suppl 2 (October 2003)
    by M Stanke, S Waack
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:30:56 as ** along with 3 people and 2 groups stajich alexl wenhan EisenLab Berkeley Mycology
  • An evaluation of contemporary hidden Markov model genefinders with a predicted exon taxonomy
    Nucleic Acids Research, Vol. 35, No. 1. (January 2007), pp. 317-324.
    by Knapp, Keith, Chen, Yi-Ping Phoebe
    posted to evaluation gene-prediction by indigoviolet on 2007-11-28 10:29:13 as ** along with 2 people and 1 group wenhan GustavoLacerda EisenLab
  • Evaluation of five ab initio gene prediction programs for the discovery of maize genes
    pp. 445-460.
    by Hong Yao
    posted to evaluation gene-prediction by indigoviolet on 2007-11-28 10:51:04 as ** along with 1 group EisenLab
  • Two methods for improving performance of an HMM and their application for gene finding.
    Proc Int Conf Intell Syst Mol Biol, Vol. 5 (1997), pp. 179-186.
    by A Krogh
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:19:26 as ** along with 1 person and 1 group wenhan EisenLab
  • Identification of human gene structure using linear discriminant functions and dynamic programming.
    Proc Int Conf Intell Syst Mol Biol, Vol. 3 (1995), pp. 367-375.
    by VV Solovyev, AA Salamov, CB Lawrence
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:19:50 as ** along with 1 group EisenLab
  • Genie--gene finding in Drosophila melanogaster.
    Genome Res, Vol. 10, No. 4. (April 2000), pp. 529-538.
    by MG Reese, D Kulp, H Tammana, D Haussler
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 06:47:26 as ** along with 1 group EisenLab
  • Evaluation of gene structure prediction programs.
    Genomics, Vol. 34, No. 3. (15 June 1996), pp. 353-367.
    by M Burset, R Guigó
    posted to evaluation gene-prediction by indigoviolet on 2007-11-29 03:27:15 as ** along with 2 people and 2 groups sonjadaniela wenhan EisenLab MBLAB
  • Computational prediction of eukaryotic protein-coding genes.
    Nat Rev Genet, Vol. 3, No. 9. (September 2002), pp. 698-709.
    by MQ Zhang
    posted to gene-prediction review by indigoviolet on 2007-12-03 10:13:40 as ** along with 3 people and 3 groups dchughes GustavoLacerda wenhan EisenLab G4ID Genetics-of-Gambling
  • GAZE: A Generic Framework for the Integration of Gene-Prediction Data by Dynamic Programming
    Genome Res., Vol. 12, No. 9. (1 September 2002), pp. 1418-1427.
    by Kevin L Howe, Tom Chothia, Richard Durbin
    posted to algorithm gene-prediction by indigoviolet on 2007-02-19 20:01:13 as ** along with 3 people and 2 groups tharris druvus stajich C. elegans / WormBase EisenLab
  • SGP-1: prediction and validation of homologous genes based on sequence alignments.
    Genome Res, Vol. 11, No. 9. (September 2001), pp. 1574-1583.
    by T Wiehe, S Gebauer-Jung, T Mitchell-Olds, R Guigó
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 09:56:29 as ** along with 1 person and 1 group wenhan EisenLab
  • A Bayesian framework for combining gene predictions
    Bioinformatics, Vol. 18, No. 1. (1 January 2002), pp. 19-27.
    by Vladimir Pavlovic, Ashutosh Garg, Simon Kasif
    posted to algorithm gene-prediction by indigoviolet on 2007-11-29 03:27:01 as ** along with 1 group EisenLab
  • Comparative ab initio prediction of gene structures using pair HMMs.
    Bioinformatics, Vol. 18, No. 10. (October 2002), pp. 1309-1318.
    by IM Meyer, R Durbin
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 09:58:55 as ** along with 3 people and 2 groups azazello acarbo wenhan EisenLab MBLAB
  • Genome annotation past, present, and future: how to define an ORF at each locus.
    Genome Res, Vol. 15, No. 12. (December 2005), pp. 1777-1786.
    by MR Brent
    posted to gene-prediction review by indigoviolet on 2007-11-28 10:50:42 as ** along with 3 people and 1 group textoris Ayest wenhan EisenLab
  • EGASP: the human ENCODE Genome Annotation Assessment Project.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by R Guigó, P Flicek, JF Abril, A Reymond, J Lagarde, F Denoeud, S Antonarakis, M Ashburner, VB Bajic, E Birney, R Castelo, E Eyras, C Ucla, TR Gingeras, J Harrow, T Hubbard, SE Lewis, MG Reese
    posted to evaluation gene-prediction by indigoviolet on 2007-12-03 10:49:11 as ** along with 3 people and 2 groups jfr wenhan timhubbard Bioinformatics EisenLab
  • How does eukaryotic gene prediction work?
    Nature Biotechnology, Vol. 25, No. 8., pp. 883-885.
    by Michael R Brent
    posted to gene-prediction review by indigoviolet on 2007-11-27 09:00:33 as ** along with 7 people and 3 groups jyuh dchughes wenhan zwang cabbagezs nklee ale EisenLab G4ID Genetics-of-Gambling
  • GeneComber: combining outputs of gene prediction programs for improved results
    Bioinformatics, Vol. 19, No. 10. (1 July 2003), pp. 1296-1297.
    by Sohrab P Shah, Graham P Mcvicker, Alan K Mackworth, Sanja Rogic, Francis BF Ouellette
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 11:44:07 as ** along with 1 group EisenLab
  • Vertebrate gene finding from multiple-species alignments using a two-level strategy.
    Genome Biol, Vol. 7 Suppl 1 (2006)
    by D Carter, R Durbin
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:18:21 as ** along with 2 people and 2 groups dpollard dmc EisenLab Durbin group
  • An assessment of gene prediction accuracy in large DNA sequences.
    Genome Res, Vol. 10, No. 10. (October 2000), pp. 1631-1642.
    by R Guigó, P Agarwal, JF Abril, M Burset, JW Fickett
    posted to evaluation gene-prediction by indigoviolet on 2005-11-15 00:46:12 as ** along with 1 person and 1 group wenhan EisenLab
  • Genome annotation: from sequence to biology.
    Nat Rev Genet, Vol. 2, No. 7. (July 2001), pp. 493-503.
    by L Stein
    posted to gene-prediction review by indigoviolet on 2007-12-03 10:19:03 as ** along with 1 person and 1 group dullhunk EisenLab
  • Evaluation of Gene-Finding Programs on Mammalian Sequences
    Genome Res., Vol. 11, No. 5. (1 May 2001), pp. 817-832.
    by Sanja Rogic, Alan K Mackworth, Francis B Ouellette
    posted to evaluation gene-prediction by indigoviolet on 2007-11-28 10:27:10 as ** along with 2 people and 1 group ep161302 wenhan EisenLab
  • Heuristic approach to deriving models for gene finding.
    Nucleic Acids Res, Vol. 27, No. 19. (1 October 1999), pp. 3911-3920.
    by J Besemer, M Borodovsky
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:19:15 as ** along with 4 people and 2 groups wenhan azazello alexl GustavoLacerda EisenLab MBLAB
  • TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2878-2879.
    by WH Majoros, M Pertea, SL Salzberg
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:30:03 as ** along with 2 people and 1 group GustavoLacerda alexl EisenLab
  • SLAM web server for comparative gene finding and alignment.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3507-3509.
    by S Cawley, L Pachter, M Alexandersson
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 09:57:13 as ** along with 1 group EisenLab
  • Improving gene recognition accuracy by combining predictions from two gene-finding programs
    Bioinformatics, Vol. 18, No. 8. (1 August 2002), pp. 1034-1045.
    by Sanja Rogic, Francis BF Ouellette, Alan K Mackworth
    posted to annotation gene-prediction genome protein-coding by indigoviolet on 2007-11-23 08:45:39 as ** along with 1 person and 1 group GustavoLacerda EisenLab
  • GeneWise and Genomewise
    Genome Res., Vol. 14, No. 5. (1 May 2004), pp. 988-995.
    by Ewan Birney, Michele Clamp, Richard Durbin
    posted to algorithm gene-prediction by indigoviolet on 2005-11-15 00:32:52 as *** along with 4 people and 2 groups azazello alexl wenhan Stew EisenLab MBLAB
  • Gene recognition via spliced sequence alignment.
    Proc Natl Acad Sci U S A, Vol. 93, No. 17. (20 August 1996), pp. 9061-9066.
    by MS Gelfand, AA Mironov, PA Pevzner
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 09:53:35 as ** along with 1 person and 1 group wenhan EisenLab
  • Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction
    Genome Res., Vol. 10, No. 7. (1 July 2000), pp. 950-958.
    by Serafim Batzoglou, Lior Pachter, Jill P Mesirov, Bonnie Berger, Eric S Lander
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 10:01:18 as ** along with 3 people and 2 groups j3xucite treangen wenhan EisenLab MBLAB
  • Prediction of complete gene structures in human genomic DNA.
    J Mol Biol, Vol. 268, No. 1. (25 April 1997), pp. 78-94.
    by C Burge, S Karlin
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:06:56 as ** along with 9 people and 2 groups pcahan1 kaspermunch dullhunk dquest wenhan GustavoLacerda nicholso nklee bandrewfox Bioinformatics EisenLab
  • GeneID in Drosophila
    Genome Res., Vol. 10, No. 4. (1 April 2000), pp. 511-515.
    by Genis Parra, Enrique Blanco, Roderic Guigo
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:24:10 as ** along with 1 person and 1 group wenhan EisenLab
  • Gene recognition by combination of several gene-finding programs.
    Bioinformatics, Vol. 14, No. 8. (1998), pp. 665-675.
    by K Murakami, T Takagi
    posted to algorithm gene-prediction by indigoviolet on 2007-11-29 03:29:51 as ** along with 1 group EisenLab
  • Computational Inference of Homologous Gene Structures in the Human Genome
    Genome Res., Vol. 11, No. 5. (1 May 2001), pp. 803-816.
    by Ru-Fang Yeh, Lee P Lim, Christopher B Burge
    posted to gene-prediction by indigoviolet on 2007-11-28 10:26:44 as ** along with 1 person and 1 group GustavoLacerda EisenLab
  • Locating protein-coding regions in human DNA sequences by a multiple sensor-neural network approach.
    Proc Natl Acad Sci U S A, Vol. 88, No. 24. (15 December 1991), pp. 11261-11265.
    by EC Uberbacher, RJ Mural
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 07:20:03 as ** along with 1 group EisenLab
  • ExonHunter: a comprehensive approach to gene finding.
    Bioinformatics, Vol. 21 Suppl 1 (June 2005)
    by B Brejová, DG Brown, M Li, T Vinar
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:39:52 as ** along with 1 group EisenLab
  • The Ensembl Automatic Gene Annotation System
    Genome Res., Vol. 14, No. 5. (1 May 2004), pp. 942-950.
    by Val Curwen, Eduardo Eyras, Daniel T Andrews, Laura Clarke, Emmanuel Mongin, Steven M Searle, Michele Clamp
    posted to annotation gene-prediction genome by indigoviolet on 2005-11-15 00:43:33 as read along with 3 people and 1 group incovoma nicholso maximilianh EisenLab
  • Comparative gene prediction in human and mouse.
    Genome Res, Vol. 13, No. 1. (January 2003), pp. 108-117.
    by G Parra, P Agarwal, JF Abril, T Wiehe, JW Fickett, R Guigó
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:24:38 as ** along with 2 people and 2 groups azazello wenhan EisenLab MBLAB
  • Computational approaches to gene prediction.
    J Microbiol, Vol. 44, No. 2. (April 2006), pp. 137-144.
    by JH Do, DK Choi
    posted to gene-prediction review by indigoviolet on 2007-11-28 01:24:00 as ** along with 1 person and 1 group GustavoLacerda EisenLab
  • Gene structure conservation aids similarity based gene prediction.
    Nucleic Acids Res, Vol. 32, No. 2. (2004), pp. 776-783.
    by IM Meyer, R Durbin
    posted to algorithm gene-prediction by indigoviolet on 2005-11-15 11:17:02 as **** along with 2 people and 1 group acarbo ep161302 EisenLab
  • Conrad: Gene prediction using conditional random fields
    Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1389-1398.
    by David Decaprio, Jade P Vinson, Matthew D Pearson, Philip Montgomery, Matthew Doherty, James E Galagan
    posted to algorithm gene-prediction by indigoviolet on 2007-11-28 10:41:59 as ** along with 2 people and 1 group wenhan alexl EisenLab
  • GeneMark.hmm: new solutions for gene finding.
    Nucleic Acids Res, Vol. 26, No. 4. (15 February 1998), pp. 1107-1115.
    by AV Lukashin, M Borodovsky
    posted to algorithm gene-prediction by indigoviolet on 2007-12-03 09:52:55 as ** along with 1 person and 1 group wenhan EisenLab
    • Note: You may cite this page as: http://www.citeulike.org/tag/gene-prediction

    Result page: 1 2 Next RIS BibTeX
    CiteULike organises scholarly (or academic) papers or literature and provides bibliographic (which means it makes bibliographies) for universities and higher education establishments. It helps undergraduates and postgraduates. People studying for PhDs or in postdoctoral (postdoc) positions. The service is similar in scope to EndNote or RefWorks or any other reference manager like BibTeX, but it is a social bookmarking service for scientists and humanities researchers.