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	Evidence for escape from adaptive conflict? [My Copy] Nature, Vol. 462, No. 7274. (10 December 2009), pp. E1-E1. by Todd Barkman, Jianzhi Zhang posted to reply natural_selection gene_duplication adaptation by emptyhb on 2009-12-11 15:15:05 as
	Robustness: mechanisms and consequences [My Copy] Trends in Genetics, Vol. 25, No. 9. (28 September 2009), pp. 395-403. by Joanna Masel,, Mark .. Siegal, posted to neutral_evolution mutational_robustness mutation_rate gene_network gene_duplication adaptive_processes by joebilkobailey on 2009-12-10 16:24:29 as along with 4 people heliopais abhishek_tiwari qwermish brembs
	The limits of subfunctionalization [My Copy] BMC Evolutionary Biology, Vol. 7, No. 1. (07 November 2007), 213. by Thomas MacCarthy, Aviv Bergman posted to gene_networks gene_duplication by joebilkobailey on 2009-12-10 11:50:02 as along with 1 person azazello
	Escape from adaptive conflict after duplication in an anthocyanin pathway gene [My Copy] Nature In Nature, Vol. 454, No. 7205. (25 June 2008), pp. 762-765. by David L. Des Marais, Mark D. Rausher posted to neo_functionalization natural_selection gene_duplication adaptation by emptyhb on 2009-12-09 22:37:28 as along with 5 people and 1 group gjuggler stajich bpcusack djkt tny Mycology
	Natural history and evolutionary principles of gene duplication in fungi [My Copy] Nature, Vol. 449, No. 7158. (06 September 2007), pp. 54-61. by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev posted to gene_duplication gene fungi by Jporci on 2009-11-20 08:35:29 as along with 20 people and 4 groups bcondon GustavoLacerda biomcgary gdb schwartzjmc keb45 gjuggler aheilbut dpollard tny dchughes djkt stajich zwang lp2 tzhughes maximilianh pkm bpcusack dandaman EisenLab G4ID Genetics-of-Gambling Mycology
	Probabilistic Cross-Species Inference of Orthologous Genomic Regions Created by Whole-Genome Duplication in Yeast [My Copy] Genetics, Vol. 179, No. 3. (1 July 2008), pp. 1681-1692. by Gavin C. Conant, Kenneth H. Wolfe posted to yeast purifying_selection paralog ortholog orthogroup genome_duplication gene_loss gene_duplication gene_deletion fitness dosage_effect by biomcgary on 2009-11-13 21:36:36 as
	Divergence of exonic splicing elements after gene duplication and the impact on gene structures [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R120. by Zhenguo Zhang, Li Zhou, Ping Wang, et al.Yang Liu, Xianfeng Chen, Landian Hu, Xiangyin Kong posted to gene_duplication functional_novelty exonic_splicing_silencers exonic_splicing_enhancers alternative_splicing_isoforms 13-nov-09 by bdessailly to the group Orengo Group Journal Picks on 2009-11-13 10:16:58 as along with 4 people djkt yogita farhat bpcusack
	Functional Partitioning of Yeast Co-Expression Networks after Genome Duplication [My Copy] PLoS Biol, Vol. 4, No. 4. (4 April 2006), e109. by Gavin C. Conant, Kenneth H. Wolfe posted to yeast redundancy network_evolution module_rewiring modularity genome_duplication gene_network gene_duplication gene_coexpression by biomcgary on 2009-11-12 19:13:00 as along with 3 people and 1 group dpollard nirfriedman bpcusack EisenLab
	Turning a hobby into a job: How duplicated genes find new functions [My Copy] Nat Rev Genet, Vol. 9, No. 12. (01 December 2008), pp. 938-950. by Gavin C. Conant, Kenneth H. Wolfe posted to yeast subfunctionalization review protein_function neo-functionalization genome_duplication gene_duplication gene_deletion evolution_rate evolution dosage_effect arabidopsis by biomcgary on 2009-11-12 17:13:55 as along with 12 people and 3 groups Annab clearbluespring ajaymalik ilyashl azazello pinney gderwin Zephyrus bootsy strands dchughes pkonings Bioinformatics Roswell Cancer Crosstalk R.E.A.D
	Comparing Genomes with Duplications: A Computational Complexity Point of View [My Copy] IEEE/ACM Trans. Comput. Biol. Bioinformatics, Vol. 4, No. 4. (2007), pp. 523-534. by Guillaume Blin, Cedric Chauve, Guillaume Fertin, Romeo Rizzi, Stephane Vialette posted to gene_duplication by stefano_beretta on 2009-11-10 13:15:48 as
	Adaptive evolution of young gene duplicates in mammals. [My Copy] Genome research, Vol. 19, No. 5. (May 2009), pp. 859-867. by Mira V. Han, Jeffery P. Demuth, Casey L. McGrath, Claudio Casola, Matthew W. Hahn posted to mammals gene_duplication adaptive_evolution by cmzmasek on 2009-11-02 22:03:59 as along with 4 people clearbluespring gjuggler maximilianh djkt
	Duplicate genes increase gene expression diversity within and between species. [My Copy] Nature genetics, Vol. 36, No. 6. (June 2004), pp. 577-579. by Zhenglong Gu, Scott A. Rifkin, Kevin P. White, Wen-Hsiung H. Li posted to microarray gene_duplication expression_evolution drosophila by daveGerrard on 2009-10-30 14:30:39 as along with 1 person and 1 group penka Nie
	Divergence in expression between duplicated genes in Arabidopsis. [My Copy] Molecular biology and evolution, Vol. 24, No. 10. (1 October 2007), pp. 2298-2309. by Eric W. Ganko, Blake C. Meyers, Todd J. Vision posted to gene_duplication expression_evolution arabidopsis by daveGerrard on 2009-10-28 11:04:19 as along with 1 person gjuggler
	Gene duplication and evolutionary novelty in plants [My Copy] New Phytologist, Vol. 183, No. 3. (2009), pp. 557-564. by Lex E. Flagel, Jonathan F. Wendel posted to gene_duplication evolution by echinotrix on 2009-10-22 09:42:11 as along with 3 people maren natstreet druvus
	Dosage sensitivity and the evolution of gene families in yeast. [My Copy] Nature, Vol. 424, No. 6945. (10 July 2003), pp. 194-197. by Balázs Papp, Csaba Pál, Laurence D. Hurst posted to yeast_saccharomyces_cerevisiae gene_duplication by sbottani on 2009-09-29 14:31:40 as
	CONCERTED AND BIRTH-AND-DEATH EVOLUTION OF MULTIGENE FAMILIES* [My Copy] Annual Review of Genetics, Vol. 39, No. 1. (2005), pp. 121-152. by Masatoshi Nei, Alejandro P. Rooney posted to gene_duplication birth_and_death by toni_marco on 2009-09-28 13:34:43 as along with 4 people and 2 groups hrogers sameersoi dchughes timflutre G4ID Genetics-of-Gambling
	Distinguishing Among Evolutionary Models for the Maintenance of Gene Duplicates [My Copy] J Hered, Vol. 100, No. 5. (1 September 2009), pp. 605-617. by Matthew W. Hahn posted to gene_duplication evolutionary_models by xianjun on 2009-09-18 12:25:43 as along with 2 people DrRichardBadge operon
	Reconstruction of ancestral protein interaction networks for the bZIP transcription factors. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 51. (18 December 2007), pp. 20449-20453. by John W. Pinney, Grigoris D. Amoutzias, Magnus Rattray, David L. Robertson posted to transcription_factor rewiring protein-protein_interaction probabilistic_model probabilistic_method phylogenetic_methods network_reconstruction network interaction_network gene_duplication gene_deletion comparative_network by biomcgary on 2009-09-08 22:06:52 as along with 7 people carlk saket tmmurali grahamc cjeans Pao-Yang hplatero
	Evolvability and hierarchy in rewired bacterial gene networks [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845. by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, et al.Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano posted to transcription_factor_binding_site transcription_factor rewiring network_evolution heirarchy gene_network gene_duplication evolvability by biomcgary on 2009-09-08 21:48:26 as along with 26 people and 4 groups Asclepius yyfwuhan megraw chica jimineep balabu kaarsinogen aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown Garamonfok austin hryk dbikard cactus margaritis chad_davis michaelbarton aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
	Network hubs buffer environmental variation in Saccharomyces cerevisiae. [My Copy] PLoS biology, Vol. 6, No. 11. (4 November 2008), e264. by Sasha F. Levy, Mark L. Siegal posted to yeast variation singleton protein-protein_interaction polymorphism phenotype network hub_protein hsp90 gene_duplication evolvability environmental_effects capacitor buffering by biomcgary on 2009-09-02 23:11:08 as along with 6 people semrich emptyhb benjaminsb bpcusack grahamc caseybrown
	Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates. [My Copy] Molecular biology and evolution, Vol. 24, No. 3. (March 2007), pp. 679-686. by Brian P. Cusack, Kenneth H. Wolfe posted to retrotransposition retrogene paralog gene_duplication expression biased_mutation by biomcgary on 2009-09-02 22:52:55 as along with 1 person shoshin
	When gene marriages don't work out: divorce by subfunctionalization. [My Copy] Trends in genetics : TIG, Vol. 23, No. 6. (June 2007), pp. 270-272. by Brian P. Cusack, Kenneth H. Wolfe posted to subfunctionalization splicing_alternative splicing gene_duplication by biomcgary on 2009-09-02 22:46:02 as along with 2 people clearbluespring bpcusack
	Minimal effect of ectopic gene conversion among recent duplicates in four mammalian genomes. [My Copy] Genetics, Vol. 182, No. 2. (1 June 2009), pp. 615-622. by Casey L. McGrath, Claudio Casola, Matthew W. Hahn posted to mammalian_evolution gene_duplication gene_conversion chromosome biased_mutation by biomcgary on 2009-09-02 22:43:08 as along with 2 people bpcusack djkt
	An Expressed Fgf4 Retrogene Is Associated with Breed-Defining Chondrodysplasia in Domestic Dogs [My Copy] Science In Science, Vol. 325, No. 5943. (21 August 2009), pp. 995-998. by Heidi G. Parker, Bridgett M. VonHoldt, Pascale Quignon, et al.Elliott H. Margulies, Stephanie Shao, Dana S. Mosher, Tyrone C. Spady, Abdel Elkahloun, Michele Cargill, Paul G. Jones, Cheryl L. Maslen, Gregory M. Acland, Nathan B. Sutter, Keiichi Kuroki, Carlos D. Bustamante, Robert K. Wayne, Elaine A. Ostrander posted to retrotransposition retrogene phenotype growth_factor gene_duplication evolution dog by biomcgary on 2009-08-25 22:01:28 as along with 4 people and 1 group bpcusack qayub rschulz jbhiatt Journal picks
	Stabilized gene duplication enables long-term selection-free heterologous pathway expression [My Copy] Nat Biotech, Vol. 27, No. 8. (August 2009), pp. 760-765. by Keith E. J. Tyo, Parayil K. Ajikumar, Gregory Stephanopoulos posted to e_coli gene_duplication homologous_recombination selection systems_engineering by biomcgary on 2009-08-07 17:36:03 as along with 1 person abhishek_tiwari
	Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli [My Copy] Genome Biology, Vol. 9, No. 1. (07 January 2008), R4. by Morgan Price, Paramvir Dehal, Adam Arkin posted to convergent_evolution e_coli gene_duplication horizontal_gene_transfer operon parallel_evolution paralog transcription_factor transcription_factor_binding_site by biomcgary on 2009-08-03 21:49:27 as along with 1 person erel10
	Evolution in protein interaction networks: co-evolution, rewiring and the role of duplication. [My Copy] Biochemical Society transactions, Vol. 37, No. Pt 4. (August 2009), pp. 768-771. by David L. Robertson, Simon C. Lovell posted to co-evolution evolution evolutionary_constraint evolvability gene_duplication network network_evolution predictive_biology protein-protein_interaction by biomcgary on 2009-07-28 17:29:25 as along with 1 person chica
	Backup in gene regulatory networks explains differences between binding and knockout results [My Copy] Molecular Systems Biology, Vol. 5 (16 June 2009) by Anthony Gitter, Zehava Siegfried, Michael Klutstein, et al.Oriol Fornes, Baldo Oliva, Itamar Simon, Ziv Bar-Joseph posted to dna-protein_interaction gene_buffering gene_deletion gene_duplication gene_expression gene_redundant gene_regulation network redundancy by biomcgary on 2009-07-17 17:11:20 as along with 6 people pablocarb cassj roys kiekyon jjray TRHvidsten
	Variation in gene duplicates with low synonymous divergence in Saccharomyces cerevisiae relative to Caenorhabditis elegans [My Copy] Genome Biology, Vol. 10, No. 7. (2009), R75. by Vaishali Katju, James Farslow, Ulfar Bergthorsson posted to c_elegans gene_duplication genome_duplication ohnologs yeast by biomcgary on 2009-07-15 17:51:05 as along with 2 people maren xianjun
	Evolution of multiple phosphodiesterase isoforms in stickleback involved in cAMP signal transduction pathway [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 23. by Yukuto Sato, Yasuyuki Hashiguchi, Mutsumi Nishida posted to gene_duplication protein_evolution by kiekyon on 2009-06-20 03:37:50 as
	A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast. [My Copy] Genome Res, Vol. 18, No. 1. (January 2008), pp. 137-147. by D. R. Scannell, K. H. Wolfe posted to gene_duplication protein_evolution by kiekyon on 2009-06-17 03:12:18 as along with 4 people and 1 group djkt stajich dandaman gjuggler Mycology
	Comparative inference of illegitimate recombination between rice and sorghum duplicated genes produced by polyploidization [My Copy] Genome Research, Vol. 19, No. 6. (June 2009), pp. 1026-1032. by Xiyin Wang, Haibao Tang, John E. Bowers, Andrew H. Paterson posted to evolution gene_conversion gene_duplication paleoploidy recombination by dandaman on 2009-06-15 13:40:47 as
	Conservation of dual-targeted proteins in Arabidopsis and rice points to a similar pattern of gene-family evolution [My Copy] Molecular Genetics and Genomics by Carolina Morgante, Ricardo Rodrigues, Phellippe Marbach, Camila Borgonovi, Daniel Moura, Marcio Silva-Filho posted to dual_targeting gene_duplication gene_evolution targeting by dandaman on 2009-06-04 16:12:16 as
	Expression diversity and evolutionary dynamics of rice duplicate genes [My Copy] Molecular Genetics and Genomics by Won Yim, Byung-Moo Lee, Cheol Jang posted to expression_divergence gene_conversion gene_dosage gene_duplication gene_evolution paleoploidy by dandaman on 2009-06-04 16:11:04 as along with 1 person druvus
	In silico evidence for functional specialization after genome duplication in yeast. [My Copy] FEMS yeast research, Vol. 9, No. 1. (February 2009), pp. 16-31. by O. Turunen, R. Seelke, J. Macosko posted to dnds evolution_rate evolutionary_constraint fungi gene_duplication gene_redundant genome_duplication neo-functionalization subfunctionalization by biomcgary on 2009-05-19 16:00:08 as
	Reconstructing the History of Yeast Genomes [My Copy] PLoS Genet, Vol. 5, No. 5. (15 May 2009), e1000483. by David Sankoff posted to gene_duplication molecular_evolution yeast by emptyhb on 2009-05-15 22:12:53 as along with 2 people eannaokeefe djkt
	How confident can we be that orthologs are similar, but paralogs differ? [My Copy] Trends in Genetics, Vol. 25, No. 5. (13 May 2009), pp. 210-216. by Romain A. Studer, Marc Robinson-Rechavi posted to evolution gene_duplication orthology paralogs by stajich to the group Mycology on 2009-04-26 03:28:21 as along with 9 people aceol idoerg dchughes natstreet druvus kshameer GustavoLacerda kiekyon gjuggler
	CEACAM3: An innate immune receptor directed against human-restricted bacterial pathogens [My Copy] International Journal of Medical Microbiology, Vol. 298, No. 7-8. (01 October 2008), pp. 553-560. by S. Pils, D. Gerrard, A. Meyer, C. Hauck posted to bacterial_pathogen ceacam gene_cluster gene_duplication human_adaptation molecular_evolution by daveGerrard on 2009-03-16 15:00:18 as
	Positive Selection and Gene Conversion in SPP120, a Fertilization-Related Gene, during the East African Cichlid Fish Radiation [My Copy] Mol Biol Evol, Vol. 24, No. 10. (1 October 2007), pp. 2286-2297. by Dave T. Gerrard, Axel Meyer posted to cichlid gene_cluster gene_conversion gene_duplication molecular_evolution perciformes spp120 by daveGerrard on 2009-03-16 14:58:42 as
	Patterns of gene duplication in the plant SKP1 gene family in angiosperms: evidence for multiple mechanisms of rapid gene birth [My Copy] The Plant Journal, Vol. 50, No. 5. (June 2007), pp. 873-885. by Kong, Hongzhi, Landherr, et al.L. Lena, Frohlich, W. Michael, Leebens-Mack, Jim, Ma, Hong, Depamphilis, W. Claude posted to arabdopisis evolution gene_duplication by orzenil on 2009-03-15 04:39:17 as
	Tandem and segmental gene duplication and recombination in the evolution of plant disease resistance genes [My Copy] Trends in Genetics, Vol. 20, No. 3. (March 2004), pp. 116-122. by D. Leister posted to arabdopisis disease_resistance_genes evolution gene_duplication by orzenil on 2009-03-15 04:38:11 as
	Evolving protein interaction networks through gene duplication. [My Copy] J Theor Biol, Vol. 222, No. 2. (21 May 2003), pp. 199-210. by R. Pastor-Satorras, E. Smith, R. V. Solé posted to gene_duplication networks robustness by wangbo on 2009-03-09 14:51:17 as along with 3 people dakelley gurkanbebek timflutre
	A duplication growth model of gene expression networks [My Copy] Bioinformatics, Vol. 18, No. 11. (1 November 2002), pp. 1486-1493. by Ashish Bhan, David J. Galas, T. Gregory Dewey posted to gene_duplication gene_expression gene_networks grn by wangbo on 2009-03-05 16:59:38 as along with 3 people kentz kaarsinogen gurkanbebek
	Selection and gene duplication: a view from the genome [My Copy] Genome Biology, Vol. 3, No. 5. (2002), pp. reviews1012.1-reviews1012.3. by Andreas Wagner posted to gene_duplication selection by wangbo on 2009-03-05 16:37:46 as along with 2 people ilyashl RamuAnandakrishnan
	Selection in the evolution of gene duplications. [My Copy] Genome Biol, Vol. 3, No. 2. (2002) by F. A. Kondrashov, I. B. Rogozin, Y. I. Wolf, E. V. Koonin posted to evolution gene_duplication selection by wangbo on 2009-03-05 16:33:35 as along with 2 people marcio ujh
	The origin of new genes: glimpses from the young and old. [My Copy] Nat Rev Genet, Vol. 4, No. 11. (November 2003), pp. 865-875. by M. Long, E. Betrán, K. Thornton, W. Wang posted to evolution evolvability gene gene_duplication self_organization by wangbo on 2009-03-05 16:31:05 as along with 5 people ramiro2k jbsaltz ushishir timflutre shoshin
	Evolution after gene duplication: models, mechanisms, sequences, systems, and organisms. [My Copy] J Exp Zoolog B Mol Dev Evol (12 July 2006) by Christian Roth, Shruti Rastogi, Lars Arvestad, et al.Katharina Dittmar, Sara Light, Diana Ekman, David A A. Liberles posted to evolution gene_duplication by wangbo on 2009-03-05 16:25:36 as along with 9 people jameswasmuth azazello zhlei operon bjorns treangen signalduplication LouisKa smbe2008
	Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000232. by Wan K. Kim, Edward M. Marcotte posted to biological_networks divergence evolution gene_duplication yeast by wangbo on 2009-03-05 16:20:37 as along with 7 people dakelley biomcgary cabbagesofdoom chad_davis grahamc bpcusack tmmurali
	Evolution by gene duplication: an update [My Copy] Trends in Ecology and Evolution, Vol. 18, No. 6. (June 2003), pp. 292-298. by J. Zhang posted to evolution gene_duplication by wangbo on 2009-03-05 16:07:38 as along with 5 people and 1 group mgomes dlobo ruvido RamuAnandakrishnan BioNica GEB
	On the Multiple Gene Duplication Problem [My Copy] Algorithms and Computation (1998), pp. 348-357. by Michael Fellows, Michael Hallett, Ulrike Stege posted to computational_biology gene_duplication species_tree by wangbo on 2009-03-04 17:34:42 as

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evolution	46
yeast	17
gene_family	16
genomics	15
retrogenes	11
selfish_dna	10
family_evolution	9
gene_families	9
protein_evolution	9
birth_and_death	8
duplication	8
evolution_rate	8
fungi	8
genome_duplication	8
subfunctionalization	8
bioinformatics	6
gene_trees	6
protein_function	6
selection	6
expansion_and_contraction	5
gene_evolution	5
genome_evolution	5
methods	5
orthology	5
paralog	5
phylogenomics	5
polyploidy	5
adaptation	4
drosophila	4
evolutionary_constraint	4
evolvability	4
gene_conversion	4
gene_deletion	4
gene_expression	4
human_evolution	4
molecular_evolution	4
neofunctionalization	4
network	4
paralogs	4
protein-protein_interaction	4
redundancy	4
arabidopsis	3
comparative_genomics	3
convergent_evolution	3
evolutionary_genomics	3
function_prediction	3
gene	3
gene_network	3
gene_redundant	3
hgt	3
natural_selection	3
network_evolution	3
orthologs	3
phenotype	3
phylogenetics	3
power-law	3
protein_interaction	3
protein_sequence	3
protein_universe	3
pseudogene	3
review	3
robustness	3
saccharomyces	3
stochastic_process	3
transcription_factor	3
13-nov-09	2
alternative_splicing_isoforms	2
arabdopisis	2
biased_mutation	2
birthdeath	2
coalescent	2
codon_bias	2
copy_number_variation	2
divergence	2
dosage_effect	2
e_coli	2
elephant_share	2
evolutionary_models	2
exonic_splicing_enhancers	2
exonic_splicing_silencers	2
expression	2
expression_divergence	2
expression_evolution	2
gene_cluster	2
gene_regulation	2
genome	2
grn	2
hox	2
hydrophobin	2
neo-functionalization	2
orthogroup	2
ortholog	2
orthology_analysis	2
population_genetics	2
regulatory_evolution	2
retrotransposition	2
rewiring	2
roland	2
transcription_factor_binding_site	2
trichoderma	2

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