Tag gene_expression [at least 200 articles]

Recent papers classified by the tag gene_expression.

	Genome-wide allele- and strand-specific expression profiling [My Copy] Mol Syst Biol, Vol. 5 (16 June 2009) by Julien Gagneur, Himanshu Sinha, Fabiana Perocchi, Richard Bourgon, Wolfgang Huber, Lars M. Steinmetz posted to systems_biology omics gene_expression allele by leliavski on 2009-07-04 09:21:27 as along with 1 person fenghezi
	Novel tumor sampling strategies to enable microarray gene expression signatures in breast cancer: a study to determine feasibility and reproducibility in the context of clinical care. [My Copy] Breast cancer research and treatment (18 February 2009) by Christopher L. Tebbit, Jun Zhai, Brian R. Untch, et al.Matthew J. Ellis, Holly K. Dressman, Rex C. Bentley, Jay A. Baker, Paul K. Marcom, Joseph R. Nevins, Jeffrey R. Marks, John A. Olson posted to her2 gene_expression estrogen breast_cancer by jfr on 2009-07-03 14:21:22 as
	Transcriptional responses to fatty acid are coordinated by combinatorial control [My Copy] Mol Syst Biol, Vol. 3 (5 June 2007) by Jennifer J. Smith, Stephen A. Ramsey, Marcello Marelli, et al.Bruz Marzolf, Daehee Hwang, Ramsey A. Saleem, Richard A. Rachubinski, John D. Aitchison posted to tfnet gene_expression combinatorial_control by roys on 2009-06-30 06:45:39 as along with 1 person ptrobajo
	Integrated transcriptome and proteome data: the challenges ahead. [My Copy] Briefings in functional genomics & proteomics, Vol. 3, No. 3. (November 2004), pp. 212-219. by C. J. Hack posted to proteomics meta-analysis gene_expression by shikin on 2009-06-29 15:47:24 as
	Profiling changes in gene expression during differentiation and maturation of monocyte-derived dendritic cells using both oligonucleotide microarrays and proteomics. [My Copy] The Journal of biological chemistry, Vol. 276, No. 21. (25 May 2001), pp. 17920-17931. by F. Le Naour, L. Hohenkirk, A. Grolleau, et al.D. E. Misek, P. Lescure, J. D. Geiger, S. Hanash, L. Beretta posted to proteomics meta-analysis gene_expression by shikin on 2009-06-29 14:53:52 as
	Proteomic and transcriptomic analyses of macrophages with an increased resistance to oxidized low density lipoprotein (oxLDL)-induced cytotoxicity generated by chronic exposure to oxLDL. [My Copy] Molecular & cellular proteomics : MCP, Vol. 4, No. 10. (October 2005), pp. 1522-1540. by J. P. Conway, M. Kinter posted to proteomics meta-analysis gene_expression by shikin on 2009-06-29 14:43:55 as
	Systems analysis of transcriptome and proteome in retinoic acid/arsenic trioxide-induced cell differentiation/apoptosis of promyelocytic leukemia. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 21. (24 May 2005), pp. 7653-7658. by P. Z. Zheng, K. K. Wang, Q. Y. Zhang, et al.Q. H. Huang, Y. Z. Du, Q. H. Zhang, D. K. Xiao, S. H. Shen, S. Imbeaud, E. Eveno, C. J. Zhao, Y. L. Chen, H. Y. Fan, S. Waxman, C. Auffray, G. Jin, S. J. Chen, Z. Chen, J. Zhang posted to proteomics meta-analysis gene_expression cancer by shikin on 2009-06-29 13:27:50 as along with 1 person textoris
	Identification of Novel Functional Differences in Monocyte Subsets Using Proteomic and Transcriptomic Methods. [My Copy] Journal of proteome research (22 June 2009) by Changqing Zhao, Huoming Zhang, Wing-Cheong C. Wong, et al.Xiaohui Sem, Hao Han, Siew-Min M. Ong, Yann-Chong C. Tan, Wei-Hseun H. Yeap, Chee-Sian S. Gan, Kok-Quan Q. Ng, Mickey Boon-Chai B. Koh, Philippe Kourilsky, Siu-Kwan K. Sze, Siew-Cheng C. Wong posted to proteomics meta-analysis gene_expression by shikin on 2009-06-29 12:55:54 as
	Biological function of unannotated transcription during the early development of Drosophila melanogaster [My Copy] Nature Genetics, Vol. 38, No. 10. (03 September 2006), pp. 1151-1158. by Robert J. Manak, Sujit Dike, Victor Sementchenko, et al.Philipp Kapranov, Frederic Biemar, Jeff Long, Jill Cheng, Ian Bell, Srinka Ghosh, Antonio Piccolboni, Thomas R. Gingeras posted to gene_expression fly development by roys on 2009-06-29 04:46:12 as along with 11 people and 7 groups ThomasDOtto inesdesantiago daveGerrard GeeSharpMinor emptyhb dpollard neveaire djkt wrowell Stew xingxu BergmanLab Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience Cline_lab
	Coupling of zygotic transcription to mitotic control at the Drosophila mid-blastula transition. [My Copy] Development (Cambridge, England), Vol. 136, No. 12. (June 2009), pp. 2101-2110. by Xuemin Lu, Jennifer M M. Li, Olivier Elemento, Saeed Tavazoie, Eric F F. Wieschaus posted to gene_expression fly development by roys on 2009-06-29 03:14:23 as along with 1 person and 1 group cisevol BergmanLab
	Developmental control of nuclear morphogenesis and anchoring by charleston, identified in a functional genomic screen of Drosophila cellularisation [My Copy] Development, Vol. 133, No. 4. (15 February 2006), pp. 711-723. by Fanny Pilot, Jean-Marc Philippe, Celine Lemmers, Jean-Paul Chauvin, Thomas Lecuit posted to gene_expression fly development by roys on 2009-06-29 03:10:32 as along with 1 person and 1 group wrowell Cline_lab
	Coordinated Concentration Changes of Transcripts and Metabolites in <italic>Saccharomyces cerevisiae</italic> [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000270. by Patrick H. Bradley, Matthew J. Brauer, Joshua D. Rabinowitz, Olga G. Troyanskaya posted to yeast starvation metabolite_expression metabolic_flux gene_expression by roys on 2009-06-26 21:15:14 as along with 1 person agomez
	Gene expression meta-analysis identifies metastatic pathways and transcription factors in breast cancer [My Copy] BMC Cancer, Vol. 8 (30 December 2008), 394. by Mads, Torben A. Kruse posted to pathway_analysis meta-analysis gene_expression breast_cancer by jfr on 2009-06-25 13:07:17 as along with 2 people daforerog rdiaz
	Microarray-based approach identifies microRNAs and their target functional patterns in polycystic kidney disease [My Copy] BMC Genomics, Vol. 9 (23 December 2008), 624. by Priyanka, Norbert Gretz posted to mirna integration gene_expression by jfr on 2009-06-25 13:05:33 as along with 1 person and 1 group heliopais microRNA
	COXPRESdb: a database of coexpressed gene networks in mammals. [My Copy] Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008) by T. Obayashi, S. Hayashi, M. Shibaoka, M. Saeki, H. Ohta, K. Kinoshita posted to gene_expression_nw gene_expression expression_correlation by roys on 2009-06-25 01:45:15 as along with 6 people lawraga nolodie Garamonfok klo jeremymiller guhjy
	Global Associations between Copy Number and Transcript mRNA Microarray Data: An Empirical Study. [My Copy] Cancer informatics, Vol. 6 (2008), pp. 17-23. by W. Gu, H. Choi, D. Ghosh posted to integration gene_expression copy-number by jfr on 2009-06-24 11:16:03 as
	Gene expression patterns in formalin-fixed, paraffin-embedded core biopsies predict docetaxel chemosensitivity in breast cancer patients. [My Copy] Breast cancer research and treatment, Vol. 108, No. 2. (March 2008), pp. 233-240. by J. C. Chang, A. Makris, M. C. Gutierrez, et al.S. G. Hilsenbeck, J. R. Hackett, J. Jeong, M. L. Liu, J. Baker, K. Clark-Langone, F. L. Baehner, K. Sexton, S. Mohsin, T. Gray, L. Alvarez, G. C. Chamness, C. K. Osborne, S. Shak posted to therapy rt-pcr gene_expression classification breast_cancer by jfr on 2009-06-24 10:01:34 as
	Meta-analysis of colorectal cancer gene expression profiling studies identifies consistently reported candidate biomarkers. [My Copy] Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, Vol. 17, No. 3. (March 2008), pp. 543-552. by S. K. Chan, O. L. Griffith, I. T. Tai, S. J. Jones posted to meta-analysis gene_expression colon_cancer biomarker by jfr on 2009-06-22 13:10:39 as
	Definition, conservation and epigenetics of housekeeping and tissue-enriched genes [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 269. by Xinwei She, Carol Rohl, John Castle, Amit Kulkarni, Jason Johnson, Ronghua Chen posted to gene_expression by shikin on 2009-06-22 11:23:26 as along with 2 people barriot fpattyn
	Backup in gene regulatory networks explains differences between binding and knockout results [My Copy] Mol Syst Biol, Vol. 5 (16 June 2009) by Anthony Gitter, Zehava Siegfried, Michael Klutstein, et al.Oriol Fornes, Baldo Oliva, Itamar Simon, Ziv Bar-Joseph posted to tfnet protein-dna gene_expression by roys on 2009-06-22 00:44:06 as along with 3 people kiekyon jjray TRHvidsten
	Advanced analysis and visualization of gene copy number and expression data. [My Copy] BMC bioinformatics, Vol. 10 Suppl 1 (2009) by R. Autio, M. Saarela, A. K. Järvinen, S. Hautaniemi, J. Astola posted to software integration gene_expression copy-number by jfr on 2009-06-19 10:03:14 as along with 3 people rdiaz Terkko jdbowes
	Evaluating reproducibility of differential expression discoveries in microarray studies by considering correlated molecular changes. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 13. (1 July 2009), pp. 1662-1668. by M. Zhang, L. Zhang, J. Zou, et al.C. Yao, H. Xiao, Q. Liu, J. Wang, D. Wang, C. Wang, Z. Guo posted to microarray gene_expression by shikin on 2009-06-17 19:06:51 as along with 4 people and 1 group guhjy rdiaz dswan renatomilani Bioinformatics
	ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 15. (1 August 2006), pp. 1919-1920. by W. N. van Wieringen, J. A. Belien, S. J. Vosse, E. M. Achame, B. Ylstra posted to software integration gene_expression copy-number by jfr on 2009-06-16 17:15:15 as along with 1 person csgillespie
	A comprehensive functional analysis of tissue specificity of human gene expression [My Copy] BMC Biology, Vol. 6, No. 1. (2008) by Zoltan Dezso, Yuri Nikolsky, Evgeny Sviridov, et al.Weiwei Shi, Tatiana Serebriyskaya, Damir Dosymbekov, Andrej Bugrim, Eugene Rakhmatulin, Richard Brennan, Alexey Guryanov, Kelly Li, Julie Blake, Raymond Samaha, Tatiana Nikolskaya posted to tissue_specificity gene_expression control_genes by jfr on 2009-06-16 17:12:22 as along with 5 people guhjy acanario inesdesantiago imina GeeSharpMinor
	Gene-Expression Signatures in Breast Cancer [My Copy] N Engl J Med, Vol. 360, No. 8. (19 February 2009), pp. 790-800. by Christos Sotiriou, Lajos Pusztai posted to subtypes review gene_expression classification breast_cancer by jfr on 2009-06-16 16:52:11 as along with 4 people and 1 group tonamswish Zephyrus edwardli misonneh Breast Cancer Reading Club
	The Origins of Breast Cancer Prognostic Gene Expression Profiles [My Copy] Cancer Res, Vol. 69, No. 1. (1 January 2009), pp. 310-318. by Luanne Lukes, Nigel P. Crawford, Renard Walker, Kent W. Hunter posted to prognosis gene_expression classification breast_cancer by jfr on 2009-06-15 16:32:50 as along with 3 people and 2 groups Zephyrus wimufi songpku Roswell Cancer Crosstalk Breast Cancer Reading Club
	Cyclic AMP regulates extracellular matrix gene expression and metabolism in cultured primary rat chondrocytes [My Copy] Matrix Biology (08 June 2009) by Jason S. Rockel, Matthew Grol, Suzanne M. Bernier, Andrew Leask posted to gene_expression ecm by grahamc on 2009-06-15 05:36:26 as
	Statistical Inferences for Isoform Expression in RNA-Seq. [My Copy] Bioinformatics (Oxford, England) (25 February 2009) by Hui Jiang, Wing Hung H. Wong posted to rnaseq gene_expression expression by stajich to the group Mycology on 2009-06-13 20:36:52 as along with 10 people and 1 group ThomasDOtto guhjy ghattem djkt shikin pengchy vplagnol rschulz jmcq GeeSharpMinor SIMR bioinformatics
	Genome-wide Analysis of Histone Methylation Reveals Chromatin State-Based Regulation of Gene Transcription and Function of Memory CD8+ T Cells [My Copy] Immunity (11 June 2009) by Yasuto Araki, Zhibin Wang, Chongzhi Zang, et al. Wood, Dustin Schones, Kairong Cui, Tae-Young Roh, Brad Lhotsky, Robert P. Wersto, Weiqun Peng posted to t_cytotoxic_cells t_cells omics immunological_memory histone_modifications gene_expression epigenetics by leliavski on 2009-06-13 19:53:53 as
	Note on the kinetics and stochastics of induced protein synthesis as influenced by various models for messenger RNA degradation [My Copy] Journal of Theoretical Biology, Vol. 79, No. 2. (21 July 1979), pp. 247-257. by D. Rigney posted to gene_expression by ddcttrl on 2009-06-11 14:59:36 as
	A gene expression signature that defines breast cancer metastases [My Copy] Clinical and Experimental Metastasis by Rachel Ellsworth, Jeff Seebach, Lori Field, et al.Caroline Heckman, Jennifer Kane, Jeffrey Hooke, Brad Love, Craig Shriver posted to metastasis gene_expression breast_cancer by jfr on 2009-06-10 14:01:32 as along with 2 people Zephyrus frohike
	Gene expression profiling: canonical molecular changes and clinicopathological features in sporadic colorectal cancers. [My Copy] World journal of gastroenterology : WJG, Vol. 14, No. 43. (21 November 2008), pp. 6662-6672. by J. C. Kim, S. Y. Kim, S. A. Roh, et al.D. H. Cho, D. D. Kim, J. H. Kim, Y. S. Kim posted to mutations gene_expression colon_cancer by jfr on 2009-06-10 13:59:42 as
	Gene expression signature for recurrence in stage III colorectal cancers. [My Copy] Cancer, Vol. 115, No. 2. (15 January 2009), pp. 283-292. by T. Watanabe, T. Kobunai, E. Sakamoto, et al.Y. Yamamoto, T. Konishi, A. Horiuchi, R. Shimada, T. Oka, H. Nagawa posted to stageiii gene_expression colon_cancer classification by jfr on 2009-06-10 13:57:38 as
	Comparison of real-time PCR methods for detection of and O157:H7, and introduction of a general internal amplification control [My Copy] Journal of Microbiological Methods, Vol. 59, No. 3. (December 2004), pp. 337-349. by M. Klerks, C. Zijlstra, A. Vanbruggen posted to rt-qpcr protocol measurement gfp gene_expression ecoli by Vincent_Rouilly on 2009-06-09 17:15:17 as
	Peripheral blood gene expression profiling in Sjögren's syndrome [My Copy] Genes and Immunity, Vol. aop, No. current. (30 April 2009) by E. S. Emamian, J. M. Leon, C. J. Lessard, et al.M. Grandits, E. C. Baechler, P. M. Gaffney, B. Segal, N. L. Rhodus, K. L. Moser posted to systems_biology sjogrens_syndrome omics gene_expression autoimmune_diseases by leliavski on 2009-06-07 19:21:00 as
	A Reverse Transcriptase-PCR Assay for Detecting Filarial Infective Larvae in Mosquitoes [My Copy] PLoS Negl Trop Dis, Vol. 2, No. 6. (18 June 2008), e251. by Sandra J. Laney, Caitlin J. Buttaro, Sabato Visconti, et al.Nils Pilotte, Reda M. Ramzy, Gary J. Weil, Steven A. Williams posted to transmission pcr mosquito molecular_xenomonitoring larvae gene_expression filaria fieldwork diagnostic by shuzhens on 2009-06-03 15:58:19 as
	Space in systems biology of signaling pathways - towards intracellular molecular crowding in silico [My Copy] FEBS Letters, Vol. 579, No. 8. (21 March 2005), pp. 1783-1788. by Kouichi Takahashi, Satya N. V. Arjunan, Masaru Tomita posted to gene_expression diffusion biology by ddcttrl on 2009-06-02 17:08:33 as along with 10 people and 3 groups ocs monocyte biplabbose chrn biosv carmaus dagmar m_j csanford arjunan dIEMoSIRIS MoSi-Rostock compneur
	Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer [My Copy] Cancer Res, Vol. 62, No. 15. (1 August 2002), pp. 4427-4433. by Daniel R. Rhodes, Terrence R. Barrette, Mark A. Rubin, Debashis Ghosh, Arul M. Chinnaiyan posted to microarray meta-analysis gene_expression cancer by shikin on 2009-06-02 16:12:57 as along with 6 people and 1 group floatingpoint hawkeyehammer ugengma waghsk srp33 kengg Indigene
	Computational cell biology: spatiotemporal simulation of cellular events. [My Copy] Annu Rev Biophys Biomol Struct, Vol. 31 (2002), pp. 423-441. by B. M. Slepchenko, J. C. Schaff, J. H. Carson, L. M. Loew posted to reaction-diffusion gene_expression diffusion by ddcttrl on 2009-06-01 19:40:51 as along with 1 person chrn
	Modelling reaction kinetics inside cells. [My Copy] Essays in biochemistry, Vol. 45 (2008), pp. 41-56. by R. Grima, S. Schnell posted to reaction-diffusion gene_expression biology by ddcttrl on 2009-06-01 19:32:58 as
	Adaptation of fish to different environmental temperature by qualitative and quantitative changes in gene expression [My Copy] Journal of Thermal Biology, Vol. 20, No. 1-2. (May 1995), pp. 167-174. by G. Goldspink posted to temperature paper_1 gene_expression adaptation by anphony to the group Savage Lab, UCLA on 2009-06-01 18:53:04 as
	Induction of host defence responses by Drosophila C virus [My Copy] J Gen Virol, Vol. 89, No. 6. (1 June 2008), pp. 1497-1501. by Lauren M. Hedges, Karyn N. Johnson posted to jak-stat innate_immunity gene_expression dsrna drosophila dcv antiviral by shuzhens on 2009-06-01 16:40:17 as
	GARP: a key receptor controlling FOXP3 in human regulatory T cells. [My Copy] Journal of cellular and molecular medicine (13 May 2009) by M Probst-Kepper, R Geffers, A Kröger, et al.N Viegas, C Erck, H-J J. Hecht, H Lünsdorf, R Roubin, D Moharregh-Khiabani, K Wagner, F Ocklenburg, A Jeron, H Garritsen, T P P. Arstila, E Kekäläinen, R Balling, H Hauser, J Buer, S Weiss posted to treg_cells t_cells immune_regulation gene_expression garp foxp3 by leliavski on 2009-05-31 12:06:55 as
	Interplay of master regulatory proteins and mRNA in gene expression: 3D Monte Carlo simulations [My Copy] Chemical Physics Letters, Vol. 456, No. 4-6. (05 May 2008), pp. 247-252. by Vladimir P. Zhdanov posted to mrna gene_expression diffusion by ddcttrl on 2009-05-29 20:31:21 as
	Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1521-1527. by Jia Meng, Shou-Jiang Gao, Yufei Huang posted to gene_expression enrichment clustering by shikin on 2009-05-29 16:51:31 as along with 1 person greg
	Stress-Dependent Coordination of Transcriptome and Translatome in Yeast [My Copy] PLoS Biol, Vol. 7, No. 5. (5 May 2009), e1000105. by Regula E. Halbeisen, André P. Gerber posted to stress gene_expression expression_correlation by roys on 2009-05-27 17:47:33 as
	Key Issues in Conducting a Meta-Analysis of Gene Expression Microarray Datasets [My Copy] PLoS Medicine, Vol. 5, No. 9. (1 September 2008), e184. by Adaikalavan Ramasamy, Adrian Mondry, Chris C. Holmes, Douglas G. Altman posted to microarray meta_analysis gene_expression by frohike on 2009-05-26 20:25:47 as along with 9 people and 1 group lwaldron daforerog Zephyrus shikin druvus guhjy aviad_work jfr ptrobajo Roswell Cancer Crosstalk
	Inferring cellular networks - a review [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 6. (2007) by Florian Markowetz, Rainer Spang posted to network_inference gene_expression causality biological_networks by roys on 2009-05-24 18:02:13 as along with 11 people ocs cswinburne ndiaz edwardmorrissey guhjy tmmurali shigepong dejori heliopais bertelsen czeller
	Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (16 April 2009) by Sarah E E. Calvo, David J J. Pagliarini, Vamsi K K. Mootha posted to transcription rna orf genetics gene_expression by psique on 2009-05-22 11:13:43 as along with 4 people daforerog fenghezi bpcusack brianb
	The transcriptome of human CD34+ hematopoietic stem-progenitor cells [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 20. (19 May 2009), pp. 8278-8283. by Yeong C. Kim, Qingfa Wu, Jun Chen, et al.Zhenyu Xuan, Yong-Chul Jung, Michael Q. Zhang, Janet D. Rowley, San M. Wang posted to stem_cells sage gene_expression by shikin on 2009-05-20 14:35:10 as