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Tag gene_networks [19 articles]

Recent papers classified by the tag gene_networks.
  • Modeling network dynamics: the lac operon, a case study
    The Journal Of Cell Biology, Vol. 161, No. 3. (12 May 2003), pp. 471-476.
    by Jose M Vilar, Calin C Guet, Stanislas Leibler
    posted to gene_networks modeling modeling-general by monod on 2005-11-08 14:35:12 as ***
  • Interlinked Fast and Slow Positive Feedback Loops Drive Reliable Cell Decisions
    Science, Vol. 310, No. 5747. (21 October 2005), pp. 496-498.
    by Onn Brandman, James E Ferrell, Rong Li, Tobias Meyer
    posted to gene_networks systems_biology by monod on 2005-10-24 00:30:52 as read along with 8 people rklancer jyuh kentsis tuck jmeppley balajis wnpx margaritis
  • Reconstruction of genetic circuits
    Nature, Vol. 438, No. 7067., pp. 443-448.
    by David Sprinzak, Michael B Elowitz
    posted to gene_networks synthetic_biology systems_biology by monod on 2005-11-25 16:29:04 as *** along with 6 people rklancer tuck jmeppley avery dbikard austin
  • Computation in gene networks
    Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 14, No. 1. (2004), pp. 145-151.
    by Asa B Hur, Hava T Siegelmann
    posted to computation gene_networks synthetic_biology theory by monod on 2005-07-31 21:21:44 as *** along with 1 person bayesian
  • Design principles for elementary gene circuits: Elements, methods, and examples.
    Chaos, Vol. 11, No. 1. (March 2001), pp. 142-159.
    by Michael A. A Savageau
    posted to circuit gene_networks synthetic_biology systems_biology theory by monod on 2005-08-08 21:43:45 as **** along with 3 people and 1 group rklancer macowell jjray BUiGEM
  • Creating small-molecule-dependent switches to modulate biological functions.
    Chem Biol, Vol. 12, No. 2. (February 2005), pp. 151-161.
    by AR Buskirk, DR Liu
    posted to gene_networks gene_regulation synthetic_biology by monod on 2005-08-20 16:12:27 as read along with 4 people rklancer mdimmic lna grahamc
  • Core genetic module: The mixed feedback loop.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 72, No. 3 Pt 1. (September 2005)
    by P François, V Hakim
    posted to control gene_networks multistability network-motifs by monod on 2005-10-28 06:48:13 as read
  • Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage
    Science, Vol. 309, No. 5736. (05 August 2005), pp. 938-940.
    by Jan Ihmels, Sven Bergmann, Maryam Gerami-Nejad, Itai Yanai, Mark Mcclellan, Judith Berman, Naama Barkai
    posted to evolution gene_networks yeast by monod on 2005-09-02 13:39:17 as ** along with 9 people and 3 groups roys Ema aalibes arve marcius adepace entropy janek04 emptyhb EisenLab BioinfoCIPF SGU-CIPF
  • Environmental selection of the feed-forward loop circuit in gene-regulation networks
    Physical Biology, Vol. 2, No. 2. (June 2005), 81.
    by Erez Dekel, Shmoolik Mangan, Uri Alon
    posted to evolution gene_networks systems_biology by monod on 2005-08-08 17:51:06 as read
  • Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feedback systems.
    Proc Natl Acad Sci U S A, Vol. 101, No. 7. (17 February 2004), pp. 1822-1827.
    by D Angeli, JE Ferrell, ED Sontag
    posted to gene_networks multistability by monod on 2005-08-05 18:22:18 as *** along with 6 people and 2 groups rklancer dbk jyuh holan jbchang jjray streptomyces dbk-lab
  • Spontaneous evolution of modularity and network motifs.
    Proc Natl Acad Sci U S A (20 September 2005)
    by Nadav Kashtan, Uri Alon
    posted to evolution gene_networks systems_biology theory by monod on 2005-09-27 19:51:25 as read along with 15 people and 6 groups mcphee marimo Borelli alexg i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr phreeza stefanoallesina carlk MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn
  • A function-based framework for understanding biological systems.
    Annu Rev Biophys Biomol Struct, Vol. 33 (2004), pp. 75-93.
    by JD Thomas, T Lee, NP Suh
    posted to biological-function gene_networks modeling robustness systems_biology by monod on 2005-11-12 15:11:47 as ** along with 2 people eweaver mbeautru
  • Integrative analysis of cell cycle control in budding yeast.
    Mol Biol Cell, Vol. 15, No. 8. (August 2004), pp. 3841-3862.
    by KC Chen, L Calzone, A Csikasz-Nagy, FR Cross, B Novak, JJ Tyson
    posted to cell-cycle gene_networks robustness yeast by monod on 2005-12-03 00:04:30 as ** along with 2 people jbchang RamuAnandakrishnan
  • The selective values of alleles in a molecular network model are context dependent.
    Genetics, Vol. 166, No. 4. (April 2004), pp. 1715-1725.
    by J Peccoud, KV Velden, D Podlich, C Winkler, L Arthur, M Cooper
    posted to evolution gene_networks by monod on 2005-11-01 14:41:14 as *** along with 4 people rklancer RMGraze balicea christiw
  • A biochemical logic gate using an enzyme and its inhibitor. Part II: The logic gate.
    Biosystems, Vol. 70, No. 1. (June 2003), pp. 21-33.
    by S Sivan, S Tuchman, N Lotan
    posted to circuit computation control gene_networks gene_regulation logic_gate by monod on 2005-08-01 18:28:00 as *** along with 1 person rklancer
  • Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling.
    Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5944-5949.
    by J Tegner, MK Yeung, J Hasty, JJ Collins
    posted to gene_networks by madhadron on 2006-03-13 19:58:12 as read along with 5 people and 3 groups rklancer aheilbut rhem1224 rubendrr wnpx TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
  • On the attenuation and amplification of molecular noise in genetic regulatory networks.
    BMC Bioinformatics, Vol. 7, No. 1. (2 February 2006)
    by Bor-Sen S Chen, Yu-Chao C Wang
    posted to gene_networks noise by madhadron on 2006-02-23 14:47:47 as *** along with 1 person kfm9876
  • Dynamics of Boolean networks controlled by biologically meaningful functions.
    J Theor Biol, Vol. 218, No. 3. (7 October 2002), pp. 331-341.
    by L Raeymaekers
    posted to gene_networks pathways by madhadron on 2006-02-20 18:05:31 as ****
  • Counting and classifying attractors in high dimensional dynamical systems.
    J Theor Biol, Vol. 183, No. 3. (7 December 1996), pp. 269-284.
    by RJ Bagley, L Glass
    posted to gene_networks by madhadron on 2006-03-14 17:08:05 as **
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