Tag gene_regulation [at least 200 articles] Export

Recent papers classified by the tag gene_regulation.

	The transcription unit architecture of the Escherichia coli genome [My Copy] Nature Biotechnology, Vol. 27, No. 11. (01 November 2009), pp. 1043-1049. by Byung-Kwan Cho, Karsten Zengler, Yu Qiu, et al.Young S. Park, Eric M. Knight, Christian L. Barrett, Yuan Gao, Bernhard O. Palsson posted to transcription mrna genome gene_regulation e_coli dna_binding chromosome_organization bacteria by jjray on 2009-11-09 03:49:20 as along with 3 people JeremyZucker dbikard rsaito
	Architecture-Dependent Noise Discriminates Functionally Analogous Differentiation Circuits [My Copy] Cell, Vol. 139, No. 3. (30 October 2009), pp. 512-522. by Tolga Çağatay, Marc Turcotte, Michael B. Elowitz, Jordi Garcia-Ojalvo, Gürol M. Süel posted to stochastic robustness noise network gene_regulation dynamics development bacteria by jjray on 2009-11-03 21:37:58 as along with 3 people dbikard samubernard venancio
	Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes [My Copy] Nature, Vol. 453, No. 7194. (10 April 2008), pp. 539-543. by Toshiaki Watanabe, Yasushi Totoki, Atsushi Toyoda, et al.Masahiro Kaneda, Satomi Kuramochi-Miyagawa, Yayoi Obata, Hatsune Chiba, Yuji Kohara, Tomohiro Kono, Toru Nakano, M. Azim Surani, Yoshiyuki Sakaki, Hiroyuki Sasaki posted to regulation_of_gene_expression pseudogene non-coding gene_regulation by jrhill on 2009-10-31 17:43:16 as along with 7 people sebastien_vigneau galka8_diploma mtagaya rschulz eskay gjuggler inesdesantiago
	Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling [My Copy] Vol. 139, No. 3. (30 October 2009), pp. 610-622. by Shaohui Hu, Zhi Xie, Akishi Onishi, et al.Xueping Yu, Lizhi Jiang, Jimmy Lin, Hee-sool Rho, Crystal Woodard, Hong Wang, Jun-Seop Jeong, Shunyou Long, Xiaofei He, Herschel Wade, Seth Blackshaw, Jiang Qian, Heng Zhu posted to transcriptional_repressor transcription_factors interactions genomics gene_regulation cis-regulatory_element by daveGerrard to the group BergmanLab on 2009-10-30 11:28:30 as along with 2 people snow_dragon pedrobeltrao
	The functional consequences of alternative promoter use in mammalian genomes [My Copy] Trends in Genetics, Vol. 24, No. 4. (April 2008), pp. 167-177. by R. Davuluri, Y. Suzuki, S. Sugano, C. Plass, T. Huang posted to tissue_specific tata promoter gene_regulation alternative_splicing by daveGerrard to the group BergmanLab on 2009-10-29 15:35:42 as along with 3 people guhjy heliopais antonkratz
	Co-regulated transcriptional networks contribute to natural genetic variation in Drosophila sleep. [My Copy] Nature genetics, Vol. 41, No. 3. (22 March 2009), pp. 371-375. by Susan T. Harbison, Mary Anna A. Carbone, Julien F. Ayroles, Eric A. Stone, Richard F. Lyman, Trudy F. Mackay posted to sleep p-element network natural_variation microarray gene_regulation drosophila complex_traits co-expression by daveGerrard to the group BergmanLab on 2009-10-28 09:56:51 as along with 4 people and 2 groups roys dpollard daforerog djkt RockmanLab NYU Journal Review
	Fluctuations in Gene Regulatory Networks as Gaussian Colored Noise [My Copy] (23 Oct 2009) by Ming-Chang Huang, Jinn-Wen Wu, Yu-Pin Luo, Karen G. Petrosyan posted to stochastic noise network gene_regulation biophysics by jjray on 2009-10-26 23:42:58 as along with 1 person apocapoc
	Construction of an annotated corpus to support biomedical information extraction [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (23 October 2009), 349. by Paul Thompson, Syed Iqbal, John McNaught, Sophia Ananiadou posted to text_mining manual_corpus gene_regulation by cisevol to the group BergmanLab on 2009-10-25 21:31:10 as along with 3 people and 2 groups kshameer henk-cul Effie dbmi-nlp NaCTeM
	Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation. [My Copy] Molecular cell, Vol. 35, No. 6. (24 September 2009), pp. 868-880. by Marc R. Fabian, Géraldine Mathonnet, Thomas Sundermeier, et al.Hansruedi Mathys, Jakob T. Zipprich, Yuri V. Svitkin, Fabiola Rivas, Martin Jinek, James Wohlschlegel, Jennifer A. Doudna, Chyi-Ying Y. Chen, Ann-Bin B. Shyu, John R. Yates, Gregory J. Hannon, Witold Filipowicz, Thomas F. Duchaine, Nahum Sonenberg posted to transcript regulation posttranscriptional polya mirna mammalian gene_regulation by stajich to the group Mycology on 2009-10-25 20:34:07 as along with 3 people hcoller toni_marco valeriehilgers
	How to understand the cell by breaking it: network analysis of gene perturbation screens [My Copy] (15 Oct 2009) by Florian Markowetz posted to network_inference gene_regulation by apocapoc on 2009-10-19 14:28:15 as
	Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 673-684. by Christine Mayr, David P. Bartel posted to oncogene_activation gene_regulation by colinveal on 2009-10-15 09:50:28 as along with 9 people and 1 group jwfoley bertelsen manto hcoller gbloeb jbhiatt ashkelon13 megraw rschulz cube_and_beyond
	Genome-wide transcription factor localization and function in stem cells [My Copy] StemBook (2008) by Lim posted to transcription_factor stem_cells gene_regulation differentiation by isimpson on 2009-10-14 22:50:00 as along with 1 person kshameer
	Multi-species stochastic models: small RNA regulation of gene expression [My Copy] (13 Oct 2009) by Vlad Elgart posted to stochastic rna mathematical_model gene_regulation gene_expression biophysics by jjray on 2009-10-14 15:44:29 as
	Transcriptional rewiring: the proof is in the eating. [My Copy] Current biology : CB, Vol. 17, No. 16. (21 August 2007) by Antonis Rokas, Chris Todd T. Hittinger posted to transcription rewiring gene_regulation by biomcgary on 2009-10-13 20:36:40 as
	Conversion of graded to binary response in an activator-repressor system [My Copy] (8 Oct 2009) by Rajesh Karmakar posted to stochastic mathematical_model gene_regulation gene_expression bistability by jjray on 2009-10-13 19:25:17 as
	Genome-wide identification of post-translational modulators of transcription factor activity in human B cells [My Copy] Nature Biotechnology, Vol. 27, No. 9. (09 September 2009), pp. 829-837. by Kai Wang, Masumichi Saito, Brygida C. Bisikirska, et al.Mariano J. Alvarez, Wei K. Lim, Presha Rajbhandari, Qiong Shen, Ilya Nemenman, Katia Basso, Adam A. Margolin, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano posted to gene_regulation by heliopais on 2009-10-13 12:13:33 as along with 2 people ptrobajo leliavski
	Immediate mediators of the inflammatory response are poised for gene activation through RNA polymerase II stalling [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 43. (27 October 2009), pp. 18207-18212. by Karen Adelman, Megan A. Kennedy, Sergei Nechaev, et al.Daniel A. Gilchrist, Ginger W. Muse, Yurii Chinenov, Inez Rogatsky posted to response_time macrophage inflammation gene_regulation by jjray on 2009-10-12 15:42:04 as along with 1 person gbloeb
	Linking cohesin to gene regulation. [My Copy] Cell, Vol. 132, No. 6. (21 March 2008), pp. 925-928. by Daniel Peric-Hupkes, Bas van Steensel posted to review gene_regulation cohesin by clearbluespring on 2009-10-08 15:56:58 as along with 4 people diaz0058 inesdesantiago rschulz maralena
	Insect oenocytes: a model system for studying cell-fate specification by Hox genes. [My Copy] Journal of anatomy, Vol. 199, No. Pt 1-2. (g 2001), pp. 25-33. by A. P. Gould, P. R. Elstob, V. Brodu posted to oenocytes gene_regulation fate-specification by isimpson on 2009-10-08 13:36:43 as
	Pitchfork and Hopf bifurcation thresholds in stochastic equations with delayed feedback [My Copy] (17 Sep 2009) by Mathieu Gaudreault, Francoise Lepine, Jorge Vinals posted to stochastic noise gene_regulation feedback delay bifurcation by jjray on 2009-09-28 20:04:53 as
	Genomic views of distant-acting enhancers [My Copy] Nature, Vol. 461, No. 7261. (09 September 2009), pp. 199-205. by Axel Visel, Edward M. Rubin, Len A. Pennacchio posted to review gene_regulation enhancers by cmzmasek on 2009-09-28 19:21:31 as along with 7 people and 1 group bpcusack inesdesantiago greg polivares gjuggler daforerog djkt Journal picks
	The logic of chromatin architecture and remodelling at promoters. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 193-198. by Bradley R. Cairns posted to transcriptional_regulation review gene_regulation chromatin by cmzmasek on 2009-09-28 19:20:19 as along with 8 people RyuOgawa hagechouchin443 fenghezi TRHvidsten inesdesantiago rschulz humburg djkt
	Defining mechanisms that regulate RNA polymerase II transcription in vivo [My Copy] Nature, Vol. 461, No. 7261. (09 September 2009), pp. 186-192. by Nicholas J. Fuda, M. Behfar Ardehali, John T. Lis posted to transcriptional_regulation rna_polymerase_ii review gene_regulation eukaryotic by cmzmasek on 2009-09-28 19:07:24 as along with 4 people pkm fenghezi TRHvidsten inesdesantiago
	Transcription Dynamics [My Copy] Vol. 35, No. 6. (24 September 2009), pp. 741-753. by Gordon L. Hager, James G. McNally, Tom Misteli posted to transcription review gene_regulation dynamics by jjray on 2009-09-25 15:56:01 as
	Network motifs in the transcriptional regulation network of Escherichia coli [My Copy] Nature Genetics, Vol. 31, No. 1. (22 April 2002), pp. 64-68. by Shai S. Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon posted to network_motifs genetic gene_regulation e_coli biology by vtraag on 2009-09-25 13:02:22 as along with 18 people and 1 group sergiun mtagaya kaarsinogen cswinburne jstajic jjray ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel blobbybirdman zibuyu maralena hannahrajasingh Borelli ethkim EBI-regulation
	A spatial dissection of the Arabidopsis floral transcriptome by MPSS [My Copy] BMC Plant Biology, Vol. 8, No. 1. (21 April 2008), 43. by Jason Peiffer, Shail Kaushik, Hajime Sakai, et al.Mario A. Vazquez, Nidia S. Leon, Hassan Ghazal, Jean Philippe Vielle Calzada, Blake Meyers posted to transcriptome_analysis mutants genomics gene_regulation flower arabidopsis by mlog on 2009-09-20 17:44:08 as
	Genome-wide colonization of gene regulatory elements by G4 DNA motifs. [My Copy] Nucleic acids research (16 September 2009) by Zhuo Du, Yiqiang Zhao, Ning Li posted to human_genome gq-ingenome gene_regulation g4 g-quadruplex by jmrivort to the group G-quadruplex on 2009-09-19 15:57:37 as
	Endless forms: the evolution of gene regulation and morphological diversity. [My Copy] Cell, Vol. 101, No. 6. (9 June 2000), pp. 577-580. by S. B. Carroll posted to wtg09 gene_regulation evolution evodevo by isimpson on 2009-09-18 14:30:15 as
	Evolution of gene auto-regulation in the presence of noise [My Copy] IET Systems Biology, Vol. 3, No. 5. (2009), pp. 368-378. by A. Singh, J. P. Hespanha posted to stochastic noise gene_regulation feedback evolution by jjray on 2009-09-14 16:56:30 as
	Genomic regulatory blocks in vertebrates and implications in human disease [My Copy] Brief Funct Genomic Proteomic, Vol. 8, No. 4. (1 July 2009), pp. 333-342. by Pavla Navratilova, Thomas S. Becker posted to regulatory_elements heritable_diseases genome_sequence_data gene_regulation by ppgardne to the group Journal picks on 2009-09-14 09:32:11 as
	Subcellular localization of a bacterial regulatory RNA [My Copy] Proceedings of the National Academy of Sciences (11 September 2009) by Jay H. Russell, Kenneth C. Keiler posted to translation spatial rrna localization gene_regulation bacteria by jjray on 2009-09-13 06:16:46 as
	Regulation by transcription factors in bacteria: beyond description. [My Copy] FEMS microbiology reviews, Vol. 33, No. 1. (January 2009), pp. 133-151. by Enrique Balleza, Lucia N. López-Bojorquez, Agustino Martínez-Antonio, et al.Osbaldo Resendis-Antonio, Irma Lozada-Chávez, Yalbi I. Balderas-Martínez, Sergio Encarnación, Julio Collado-Vides posted to transcriptional-regulatory-networks gene_regulation gene-regulation by JeremyZucker on 2009-09-12 19:06:02 as along with 1 person druvus
	Repressor Lattice: Feedback, Commensurability, and Dynamical Frustration [My Copy] Physical Review Letters, Vol. 103, No. 11. (2009), 118101. by Mogens H. Jensen, Sandeep Krishna, Simone Pigolotti posted to spatial network lattice gene_regulation feedback dynamical_system biophysics by jjray on 2009-09-11 18:04:43 as
	Argonaute HITS-CLIP decodes microRNA\|[ndash]\|mRNA interaction maps [My Copy] Nature, Vol. 460, No. 7254. (17 June 2009), pp. 479-486. by Sung W. Chi, Julie B. Zang, Aldo Mele, Robert B. Darnell posted to smallrna mirna gene_regulation binding_site by stajich to the group Mycology on 2009-09-08 05:53:10 as along with 16 people and 2 groups pattersonee heliopais guhjy hcoller rschulz natstreet kongl gbloeb fenghezi diaz0058 gdb jbhiatt megraw tonamswish giovenko valeriehilgers Journal picks microRNA
	The Consequences of Base Pair Composition Biases for Regulatory Network Organization in Prokaryotes [My Copy] Mol Biol Evol, Vol. 26, No. 10. (1 October 2009), pp. 2171-2173. by Otto X. Cordero, Paulien Hogeweg posted to prokaryote network gene_regulation evolution dna_binding dna by jjray on 2009-09-07 16:28:22 as along with 3 people operon emptyhb maximilianh
	Interlinking positive and negative feedback loops creates a tunable motif in gene regulatory networks [My Copy] Physical Review E, Vol. 80, No. 1. (July 2009) by Xiao-Jun Tian, Xiao-Peng Zhang, Feng Liu, Wei Wang posted to synthetic_biology gene_regulation flexibility feedback by jjray to the group Synthetic Biology on 2009-09-03 23:06:15 as
	Intrinsic fluctuations in stochastic delay systems: Theoretical description and application to a simple model of gene regulation [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 2. (2009), 021909. by Tobias Galla posted to stochastic noise mathematical_model gene_regulation delay biophysics by jjray on 2009-08-31 22:05:53 as
	Geometric characteristics of dynamic correlations for combinatorial regulation in gene expression noise [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 2. (2009), 021905. by Jiajun Zhang, Zhanjiang Yuan, Tianshou Zhou posted to stochastic noise gene_regulation gene_expression correlation by jjray on 2009-08-31 22:01:16 as
	Precise Temporal Modulation in the Response of the SOS DNA Repair Network in Individual Bacteria [My Copy] PLoS Biol, Vol. 3, No. 7. (21 June 2005), e238. by Nir Friedman, Shuki Vardi, Michal Ronen, Uri Alon, Joel Stavans posted to stochastic sos gene_regulation feedback bacteria by jjray on 2009-08-29 06:36:15 as along with 9 people and 1 group dbikard balabu yyfwuhan cambray rklancer madhadron nickluscombe comb RyanGray EBI-regulation
	The SOS regulatory system: control of its state by the level of RecA protease. [My Copy] Journal of molecular biology, Vol. 167, No. 4. (15 July 1983), pp. 791-808. by J. W. Little posted to sos gene_regulation feedback bacteria by jjray on 2009-08-29 06:35:17 as
	Autogenous and nonautogenous control of response in a genetic network [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 34. (22 August 2006), pp. 12718-12723. by Francisco M. Camas, Jesús Blázquez, Juan F. Poyatos posted to sos response_time gene_regulation feedback e_coli bacteria by jjray on 2009-08-29 06:21:22 as along with 1 person aalibes
	Developmental and species-divergent globin switching are driven by BCL11A [My Copy] Nature, Vol. 460, No. 7259. (27 August 2009), pp. 1093-1097. by Vijay G. Sankaran, Jian Xu, Tobias Ragoczy, et al.Gregory C. Ippolito, Carl R. Walkley, Shanna D. Maika, Yuko Fujiwara, Masafumi Ito, Mark Groudine, M. A. Bender, Philip W. Tucker, Stuart H. Orkin posted to transcription rewiring mouse human hemoglobin gene_regulation gene_expression evolution development by biomcgary on 2009-08-26 19:31:20 as along with 1 person absterga
	Nonlinear protein degradation and the function of genetic circuits. [My Copy] Proc Natl Acad Sci U S A (22 June 2005) by Nicolas E. Buchler, Ulrich Gerland, Terence Hwa posted to nonlinear gene_regulation degradation cooperativity bacteria by jjray on 2009-08-26 19:05:07 as along with 3 people and 1 group rklancer dbikard discreteonyxorb TranscriptionalRegulationWithThermodynamicModels
	On schemes of combinatorial transcription logic [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 9. (29 April 2003), pp. 5136-5141. by Nicolas E. Buchler, Ulrich Gerland, Terence Hwa posted to synthetic_biology network gene_regulation bacteria by jjray to the group Synthetic Biology on 2009-08-26 19:02:45 as along with 6 people akraemer dbikard siebert balajis olympos discreteonyxorb
	Designing sequential transcription logic: a simple genetic circuit for conditional memory. [My Copy] Systems and synthetic biology, Vol. 1, No. 2. (21 April 2007), pp. 89-98. by Georg Fritz, Nicolas E. Buchler, Terence Hwa, Ulrich Gerland posted to transcription synthetic_biology network gene_regulation bacteria by jjray to the group Synthetic Biology on 2009-08-26 18:59:54 as
	Morphogenesis by coupled regulatory networks: Reliable control of positional information and proportion regulation [My Copy] Journal of Theoretical Biology (25 Aug 2009) by Thimo Rohlf, Stefan Bornholdt posted to spatial pattern_formation multiscale gene_regulation eukaryote development agent_based by jjray on 2009-08-26 15:39:18 as along with 2 people sigoldberg1 apocapoc
	Identification of a topological characteristic responsible for the biological robustness of regulatory networks. [My Copy] PLoS computational biology, Vol. 5, No. 7. (24 July 2009), e1000442. by Yangle Wu, Xiaomeng Zhang, Jianglei Yu, Qi Ouyang posted to yeast robustness network_motifs network information gene_regulation by jjray on 2009-08-25 21:00:03 as along with 7 people and 2 groups roys jago winterstream phoenixzxl reyez tinatoni TRHvidsten Software-Architecture Integrative Expertise for Global Health
	Noise in Gene Regulatory Networks [My Copy] Automatic Control, IEEE Transactions on In Automatic Control, IEEE Transactions on, Vol. 53, No. Special Issue. (2008), pp. 189-200. by I. Lestas, J. Paulsson, N. E. Ross, G. Vinnicombe posted to review noise gene_regulation biophysics by jjray on 2009-08-25 19:54:59 as along with 1 person sjayanthi
	A chromatin insulator mediates transgene homing and very long-range enhancer-promoter communication. [My Copy] Development (Cambridge, England), Vol. 136, No. 18. (15 September 2009), pp. 3077-3087. by Miki Fujioka, Xian Wu, James B. Jaynes posted to promoters insulators gene_regulation enhancers engrailed drosophila by emmahe on 2009-08-24 12:07:17 as along with 1 person sebastien_vigneau
	Transcriptional Regulatory Circuits: Predicting Numbers from Alphabets [My Copy] Science, Vol. 325, No. 5939. (24 July 2009), pp. 429-432. by Harold D. Kim, Tal Shay, Erin K. O'Shea, Aviv Regev posted to transcriptional_regulation review gene_regulation by jjray to the group Gene Regulation on 2009-08-23 14:32:22 as along with 16 people pkm ptrobajo rdiaz bborgeson guhjy sergiun emptyhb greg cajunsushi Borelli leliavski TRHvidsten apocapoc fenghezi dswan daforerog

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bacteria	85
feedback	63
mathematical_model	56
network	56
noise	48
evolution	44
review	42
stochastic	42
transcription	40
two-component_system	40
e_coli	31
gene_expression	31
signaling	31
bacillus_subtilis	30
spo0	27
sporulation	27
promoter	26
proj_credo	23
biophysics	22
network_motifs	21
systems_approach	20
transcription_factor	16
synthetic_biology	15
development	14
robustness	14
transcriptional_regulation	14
immune_activation	12
metabolism	12
dna_binding	11
drosophila	11
gene_order	11
phopq	10
sigma_factor	10
yeast	10
bistability	9
mycobacterium_tuberculosis	9
biochemical_systems_theory	8
eukaryote	8
mathematically_controlled_comparison	8
microarray	8
murine_macrophage	8
oscillation	8
salmonella	8
statistical_mechanics	8
thermodynamics	8
ifn-gamma	7
networks	7
theory	7
algorithm	6
csra	6
feedforward	6
genomics	6
mirna	6
nitric_oxide	6
phosphorylation	6
posttranscriptional	6
smallrna	6
bara	5
classification	5
cooperativity	5
dynamical_system	5
grn	5
host-pathogen_interaction	5
phenotypic_heterogeneity	5
protein-dna_interaction	5
response_time	5
spatial	5
temporal_response	5
tor	5
cytokine	4
dna	4
dynamics	4
ensemble	4
gene_network	4
gene_networks	4
genome	4
inos	4
mouse	4
operon	4
positive_feedback	4
regulation	4
shea-ackers	4
sos	4
stability	4
statistics	4
synergistic_signals	4
system	4
systems_biology	4
binding	3
biochemistry	3
biology	3
database	3
delay	3
disorder	3
growth_rate	3
hormone_signalling	3
lps	3
mammalian	3
regulatory_elements	3
service	3

Tag gene_regulation [at least 200 articles] Export

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