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Recent papers classified by the tag genetic_regulatory_network.

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	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to systems_biology genetic_regulatory_network annotation by heliopais on 2009-12-07 14:26:36 as along with 42 people and 3 groups agomez kshameer nuin singhsh greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose bertelsen fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb roys torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	The interplay between transcription factors and microRNAs in genome-scale regulatory networks [My Copy] BioEssays, Vol. 31, No. 4. (1 April 2009), pp. 435-445. by Natalia J. Martinez, Albertha J. M. Walhout posted to microrna-networks transcription_factor microrna genetic_regulatory_network by heliopais on 2009-10-19 15:20:30 as along with 4 people and 1 group tonamswish inesdesantiago guhjy ealloza microRNA
	MicroRNAs: key participants in gene regulatory networks. [My Copy] Current opinion in chemical biology, Vol. 7, No. 4. (August 2003), pp. 516-523. by X. S. Ke, C. M. Liu, D. P. Liu, C. C. Liang posted to genetic_regulatory_network microrna by heliopais to the group microRNA on 2009-07-01 14:38:57 as
	Network motifs: theory and experimental approaches [My Copy] Nature Reviews Genetics In Nat Rev Genet, Vol. 8, No. 6. (1 June 2007), pp. 450-461. by Uri Alon posted to genetic_regulatory_network networks by heliopais on 2008-11-17 13:21:37 as along with 35 people and 4 groups rst phoenixzxl yoshiness Katieleonard nurban mjoach vtraag mlee1 myzhang hkuhn mtagaya cambray dswan renatomilani snow_dragon druvus pengchy cswinburne dlobo kentz icases aalibes cmmorel jtaylor dbikard margaritis shigepong zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba Borelli GEB TNT Centre de Recherches Interdisciplinaires SynBioSys
	PReMod: a database of genome-wide mammalian cis-regulatory module predictions. [My Copy] Nucleic Acids Research, Vol. 35, No. Database issue. (January 2007), pp. D122-D126. by V. Ferretti, C. Poitras, D. Bergeron, B. Coulombe, F. Robert, M. Blanchette posted to genetic_regulatory_network transcription_factor by heliopais on 2008-11-14 11:29:00 as along with 2 people guhjy wenhan
	Genome-wide computational prediction of transcriptional regulatory modules reveals new insights into human gene expression [My Copy] Genome Research In Genome Research, Vol. 16, No. 5. (10 May 2006), pp. 656-668. by Mathieu Blanchette, Alain R. R. Bataille, Xiaoyu Chen, et al.Christian Poitras, Josée Laganière, Céline Lefèbvre, Geneviève Deblois, Vincent Giguère, Vincent Ferretti, Dominique Bergeron, Benoit Coulombe, François Robert posted to genetic_regulatory_network transcription_factor by heliopais on 2008-11-14 11:22:36 as along with 3 people and 1 group bsamal ashishanand oannes Regulomics_UCHSC
	Analysis of regulatory network topology reveals functionally distinct classes of microRNAs [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 36, No. 20. (1 November 2008), pp. 6494-6503. by Xueping Yu, Jimmy Lin, Donald J. Zack, Joshua T. Mendell, Jiang Qian posted to genetic_regulatory_network microrna by heliopais to the group microRNA on 2008-11-13 09:42:36 as along with 9 people and 1 group megraw jfr emptyhb ealloza mtagaya giovenko samgj pengchy snow_dragon BenosLab
	Regulatory networks define phenotypic classes of human stem cell lines [My Copy] Nature, Vol. 455, No. 7211. (24 August 2008), pp. 401-405. by Franz-Josef Müller, Louise C. Laurent, Dennis Kostka, et al.Igor Ulitsky, Roy Williams, Christina Lu, In-Hyun Park, Mahendra S. Rao, Ron Shamir, Philip H. Schwartz, Nils O. Schmidt, Jeanne F. Loring posted to genetic_regulatory_network by heliopais on 2008-09-19 10:22:56 as along with 11 people and 1 group zufar isimpson guhjy jfr zwang ajaymalik ptrobajo wsjames roys tmmurali caseybrown Oxford Virology
	MicroRNA regulation of human protein–protein interaction network [My Copy] RNA, Vol. 13, No. 9. (24 September 2007), pp. 1402-1408. by Han Liang, Wen-Hsiung Li posted to genetic_regulatory_network microrna by heliopais on 2008-06-24 15:41:28 as along with 7 people and 1 group tonamswish daforerog jfr andersbj fij cabbagezs maralena microRNA
	Inter- and intra-combinatorial regulation by transcription factors and microRNAs [My Copy] BMC Genomics, Vol. 8 (30 October 2007), 396. by Yiming Zhou, John Ferguson, Joseph T. Chang, Yuval Kluger posted to genetic_regulatory_network microrna by heliopais to the group microRNA on 2008-06-23 14:48:40 as along with 6 people mtagaya jfr eckart_bindewald maralena bootsy hpaces
	MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals. [My Copy] Mol Cell, Vol. 26, No. 5. (8 June 2007), pp. 753-767. by J. Tsang, J. Zhu, A. van Oudenaarden posted to genetic_regulatory_network microrna by heliopais to the group microRNA on 2008-06-23 14:35:23 as along with 4 people megraw mtagaya jfr maralena
	Networking an organism [My Copy] Nature Methods, Vol. 5, No. 3. (March 2008), pp. 217-217. by Natalie de Souza posted to genetic_regulatory_network network_inference newsandviews by heliopais on 2008-06-18 10:12:32 as
	Systems biology. The scale of prediction. [My Copy] Science (New York, N.Y.), Vol. 320, No. 5881. (6 June 2008), pp. 1297-1298. by Nitin S. Baliga posted to genetic_regulatory_network newsandviews by heliopais on 2008-06-06 09:24:00 as along with 4 people AlexanderPico mingzhi jago megraw
	The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 52. (27 December 2005), pp. 19103-19108. by C. L. Barrett, C. D. Herring, J. L. Reed, B. O. Palsson posted to genetic_regulatory_network by heliopais on 2008-06-06 09:09:16 as along with 3 people alexg madhadron comb
	Inferring the role of transcription factors in regulatory networks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (06 May 2008), 228. by Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel posted to genetic_regulatory_network by heliopais on 2008-05-08 09:48:39 as along with 6 people dolchan guhjy idonaldson renatomilani maralena isimpson
	Regulatory networks: linking microarray data to systems biology. [My Copy] Mechanisms of Ageing and Development, Vol. 128, No. 1. (January 2007), pp. 168-172. by Thomas Werner posted to genetic_regulatory_network microarray by heliopais on 2008-02-28 16:11:15 as along with 1 person jfr
	Using a logical model to predict the growth of yeast [My Copy] BMC Bioinformatics, Vol. 9 (12 February 2008), 97. by K. E. Whelan, R. D. King posted to genetic_regulatory_network by heliopais on 2008-02-14 13:36:39 as along with 5 people and 1 group schwartzjmc Scis0000002 JeremyZucker dullhunk tmmurali MetabolicModeling
	Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. [My Copy] Pac Symp Biocomput In Pacific Symposium of Biocomputing (2000), pp. 418-429. by A. J. Butte, I. S. Kohane posted to genetic_regulatory_network information_theory network_inference by heliopais on 2008-01-16 13:45:04 as along with 1 person cswinburne
	Variable gene expression in eukaryotes: a network perspective [My Copy] J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1567-1575. by Patricia J. Wittkopp posted to genetic_regulatory_network by heliopais on 2008-01-15 14:58:28 as along with 2 people meanerelk natstreet
	Comparative Sequence Analysis Reveals an Intricate Network Among REST, CREB and miRNA in Mediating Neuronal Gene Expression [My Copy] Genome Biology, Vol. 7 (26 September 2006), R85. by Jie Wu, Xiaohui Xie posted to genetic_regulatory_network microrna by heliopais to the group microRNA on 2008-01-15 10:53:44 as along with 7 people abhattac daforerog klo diancu bootsy maralena xili03
	YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae. [My Copy] Nucleic Acids Research, Vol. 36, No. Database Issue. (21 November 2007), D132-D136. by Pedro T. T. Monteiro, Nuno D. D. Mendes, Miguel C. C. Teixeira, et al.Sofia d'Orey, Sandra Tenreiro, Nuno P. P. Mira, Hélio Pais, Alexandre P. P. Francisco, Alexandra M. M. Carvalho, Artur B. B. Lourenço, Isabel Sá-Correia, Arlindo L. L. Oliveira, Ana T. T. Freitas posted to database genetic_regulatory_network by heliopais on 2008-01-11 16:39:50 as along with 2 people Borelli maximilianh
	Tissue-specific regulatory elements in mammalian promoters [My Copy] Mol Syst Biol, Vol. 3 (16 January 2007) by Andrew D. Smith, Pavel Sumazin, Michael Q. Zhang posted to genetic_regulatory_network regulatory_elements by heliopais on 2008-01-11 16:35:25 as along with 5 people and 2 groups frohike rpatward dchughes SeungjoonOh roys G4ID Genetics-of-Gambling
	Using Bayesian Networks to Analyze Expression Data [My Copy] Journal of Computational Biology, Vol. 7, No. 3-4. (August 2000), pp. 601-620. by Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er posted to bayesian_network genetic_regulatory_network microarray_inference by heliopais on 2008-01-11 13:48:50 as along with 11 people ruichu yonatanf cswinburne siebert brl ldfu dragonrez Schmidtc wnpx helsley srp33
	Predicting tissue-specific enhancers in the human genome [My Copy] Genome Research, Vol. 17, No. 2. (8 February 2007), pp. 201-211. by Len A. A. Pennacchio, Gabriela G. G. Loots, Marcelo A. A. Nobrega, Ivan Ovcharenko posted to enhancer genetic_regulatory_network non_coding_dna by heliopais on 2008-01-09 10:03:03 as along with 7 people and 1 group tonamswish cisstem indigoviolet cwbrown maximilianh roys barwil EisenLab
	Advances to Bayesian network inference for generating causal networks from observational biological data [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3594-3603. by Jing Yu, V. Anne Smith, Paul P. Wang, Alexander J. Hartemink, Erich D. Jarvis posted to genetic_regulatory_network by heliopais on 2008-01-08 15:33:09 as along with 5 people arsyed Neeperando Borelli ggallone roys
	Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i282-288. by Wei Keat K. Lim, Kai Wang, Celine Lefebvre, Andrea Califano posted to genetic_regulatory_network microarray by heliopais on 2008-01-08 15:21:52 as along with 12 people jperkins jeremymiller lawraga bertelsen frohike huiminC dubhelix giovenko pengchy aramesh2 shigepong ghattem
	Inferring gene regulatory networks from multiple microarray datasets [My Copy] Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2413-2420. by Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen posted to genetic_regulatory_network by heliopais on 2008-01-08 14:58:29 as along with 5 people roys antonkratz frohike jhatrimatri natstreet
	Adaptively inferring human transcriptional subnetworks. [My Copy] Molecular systems biology, Vol. 2 (6 June 2006) by Debopriya Das, Zaher Nahlé, Michael Q. Zhang posted to genetic_regulatory_network by heliopais on 2008-01-08 14:47:23 as along with 6 people frohike akraemer tmmurali wnpx Ao_Li2007 kmdaily
	Identification and control of gene networks in living organisms via supervised and unsupervised learning [My Copy] Journal of Process Control In Selected Papers from Dycops 7 (2004), Cambridge, Massachusetts, Vol. 16, No. 3. (March 2006), pp. 303-311. by Michael E. Driscoll, Timothy S. Gardner posted to genetic_regulatory_network by heliopais on 2008-01-08 14:32:58 as along with 3 people and 1 group josedavid rklancer johncumbers GEB
	Reverse engineering of regulatory networks in human B cells. [My Copy] Nat Genet, Vol. 37 (20 March 2005), pp. 382-390. by Katia Basso, Adam A. A. Margolin, Gustavo Stolovitzky, Ulf Klein, Riccardo Dalla-Favera, Andrea Califano posted to genetic_regulatory_network by heliopais on 2008-01-08 13:53:41 as along with 12 people Neeperando akraemer verdicchio ggallone snuppepuppan kentsis dragonrez jfr wnpx raiyar naegele lylu
	Perturbations to uncover gene networks. [My Copy] Trends Genet (10 November 2006) by Jesper Tegnér, Johan Björkegren posted to genetic_regulatory_network by heliopais on 2008-01-08 13:49:08 as along with 5 people qfwills tmmurali aswin braingrind tvdbulck
	An effective structure learning method for constructing gene networks [My Copy] Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1367-1374. by Chen, Xue-Wen, Anantha, Gopalakrishna, Wang, Xinkun posted to bayesian_network genetic_regulatory_network by heliopais on 2008-01-07 11:56:23 as along with 1 person helsley
	Growing Bayesian network models of gene networks from seed genes. [My Copy] Bioinformatics, Vol. 21, No. Suppl 2. (1 September 2005), pp. ii224-ii229. by J. M. Peña, J. Björkegren, J. Tegnér posted to genetic_regulatory_network by heliopais on 2008-01-07 11:52:35 as along with 6 people and 1 group frohike abhik imouthesmp wnpx ramakris naegele ic4
	Global and Local Architecture of the Mammalian microRNA–Transcription Factor Regulatory Network [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007), e131. by Reut Shalgi, Daniel Lieber, Moshe Oren, Yitzhak Pilpel posted to genetic_regulatory_network microrna by heliopais on 2007-11-22 12:20:13 as along with 17 people and 2 groups danaiancu tonamswish myzhang daforerog mtagaya jfr andersbj rdiaz sebastien_vigneau ealloza zwang bootsy cabbagezs rahulthadani ale maralena kevinemamy Bioinformatics microRNA
	Incremental and unifying modelling formalism for biological interaction networks [My Copy] BMC Bioinformatics, Vol. 8 (08 November 2007), 433. by Anastasia Yartseva, Hanna Klaudel, Raymond Devillers, Francois Kepes posted to genetic_regulatory_network by heliopais on 2007-11-09 09:52:11 as
	A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression [My Copy] Science, Vol. 318, No. 5851. (2 November 2007), pp. 794-797. by Joel Smith, Christina Theodoris, Eric H. Davidson posted to genetic_regulatory_network by heliopais on 2007-11-09 09:45:40 as along with 8 people and 2 groups leemond31 jjray joseph_x_zhou cwbrown lshaw shigepong zwang hpaces bioNetwork_sysBio EisenLab
	Gene regulatory networks in the evolution and development of the heart. [My Copy] Science, Vol. 313, No. 5795. (29 September 2006), pp. 1922-1927. by E. N. Olson posted to genetic_regulatory_network heart review by heliopais on 2007-10-25 14:09:24 as along with 3 people and 1 group brant dpollard klo EisenLab
	Large scale statistical inference of signaling pathways from RNAi and microarray data [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Holger Froehlich, Mark Fellmann, Holger Sueltmann, Annemarie Poustka, Tim Beissbarth posted to genetic_regulatory_network microarray r by heliopais on 2007-10-16 08:48:04 as along with 3 people seemu czeller guhjy
	GeneNetwork: an interactive tool for reconstruction of genetic networks using microarray data. [My Copy] Bioinformatics, Vol. 20, No. 18. (12 December 2004), pp. 3691-3693. by C. C. Wu, H. C. Huang, H. F. Juan, S. T. Chen posted to genetic_regulatory_network by heliopais on 2007-10-05 10:28:32 as along with 1 person frohike
	Discovery of regulatory interactions through perturbation: inference and experimental design. [My Copy] Pac Symp Biocomput (2000), pp. 305-316. by T. E. Ideker, V. Thorsson, R. M. Karp posted to genetic_regulatory_network by heliopais on 2007-10-05 10:17:12 as
	A gene network inference method from continuous-value gene expression data of wild-type and mutants. [My Copy] Genome Inform Ser Workshop Genome Inform, Vol. 11 (2000), pp. 196-204. by K. M. Kyoda, M. Morohashi, S. Onami, H. Kitano posted to genetic_regulatory_network by heliopais on 2007-10-05 10:16:46 as along with 1 person rabbat
	Social regulation of gene expression in human leukocytes [My Copy] Genome Biology, Vol. 8, No. 9. (2007) by Steve Cole, Louise Hawkley, Jesusa Arevalo, Caroline Sung, Robert Rose, John Cacioppo posted to gene_expression genetic_regulatory_network socio_biology by heliopais on 2007-10-05 09:31:59 as along with 2 people ryanraaum hilalcite
	Genetic properties influencing the evolvability of gene expression. [My Copy] Science (New York, N.Y.), Vol. 317, No. 5834. (6 July 2007), pp. 118-121. by Christian R. Landry, Bernardo Lemos, Scott A. Rifkin, W. J. Dickinson, Daniel L. Hartl posted to evolution genetic_regulatory_network by heliopais on 2007-10-04 09:14:55 as along with 12 people and 3 groups daveGerrard dbensasson jjray brant balicea sebastien_vigneau grahamc emarker cisevol caseybrown emptyhb klo BergmanLab EisenLab cis-regulatory-evolution
	Synchrony Dynamics During Initiation, Failure, and Rescue of the Segmentation Clock [My Copy] Science, Vol. 317, No. 5846. (28 September 2007), pp. 1911-1915. by Ingmar H. Riedel-Kruse, Claudia Muller, Andrew C. Oates posted to delta_notch genetic_regulatory_network by heliopais on 2007-10-03 13:30:53 as along with 2 people balabu margaritis

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