Tag genome-analyzer [75 articles] Export Sort

Recent papers classified by the tag genome-analyzer.

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	Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. [My Copy] Science (New York, N.Y.), Vol. 323, No. 5912. (16 January 2009), pp. 401-404. by Shin Sasaki, Cecilia C. Mello, Atsuko Shimada, et al.Yoichiro Nakatani, Shin-Ichi Hashimoto, Masako Ogawa, Kouji Matsushima, Sam Guoping G. Gu, Masahiro Kasahara, Budrul Ahsan, Atsushi Sasaki, Taro Saito, Yutaka Suzuki, Sumio Sugano, Yuji Kohara, Hiroyuki Takeda, Andrew Fire, Shinichi Morishita posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:41:08 as along with 11 people bpcusack tprpip gdb fenghezi ewilban1 benjaminsb taroleo jbhiatt timflutre djkt pkonings
	High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Gyorgy Szittya, Simon Moxon, Dulce Santos, et al.Runchun Jing, Manuel Fevereiro, Vincent Moulton, Tamas Dalmay posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:40:16 as along with 3 people samgj pengchy druvus
	GENOMICS: Read All About It--The First Female Genome! Or Is It? [My Copy] Science, Vol. 320, No. 5881. (6 June 2008), 1274a. by Martin Enserink posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:39:40 as along with 2 people aung reyez
	The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression. [My Copy] Genes & development, Vol. 22, No. 19. (1 October 2008), pp. 2664-2676. by E. Shema, I. Tirosh, Y. Aylon, et al.J. Huang, C. Ye, N. Moskovits, N. Raver-Shapira, N. Minsky, J. Pirngruber, G. Tarcic, P. Hublarova, L. Moyal, M. Gana-Weisz, Y. Shiloh, Y. Yarden, S. A. Johnsen, B. Vojtesek, S. L. Berger, M. Oren posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:39:06 as
	MicroRNAs and cancer: past, present, and potential future [My Copy] Molecular Cancer Therapeutics, Vol. 7, No. 12. (December 2008), pp. 3655-3660. by Kristen M. Nelson, Glen J. Weiss posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:38:34 as along with 2 people shazo valeriehilgers
	Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20179-20184. by Hairi Li, Michael T. Lovci, Young-Soo Kwon, Michael G. Rosenfeld, Xiang-Dong Fu, Gene W. Yeo posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:38:04 as along with 3 people jwfoley guhjy xingxu
	High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies [My Copy] BMC Genomics, Vol. 9, No. 1. (16 December 2008), 603. by Jean M. Aury, Corinne Cruaud, Valerie Barbe, et al.Odile Rogier, Sophie Mangenot, Gaelle Samson, Julie Poulain, Veronique Anthouard, Claude Scarpelli, Francois Artiguenave, Patrick Wincker posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:36:09 as along with 10 people and 3 groups dswan michaelbarton usagi-kirin acn natstreet pengchy malcook GustavoLacerda druvus neils Bioinformatics DeNovoAssembly-SIMR SIMR bioinformatics
	Analyses of advanced rice anther transcriptomes reveal global tapetum secretory functions and potential proteins for lipid exine formation. [My Copy] Plant physiology (17 December 2008) by Ming-Der D. Huang, Fu-Jin J. Wei, Cheng-Cheih C. Wu, Yue-Ie Caroline I. Hsing, Anthony H C H. Huang posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:35:04 as
	Epigenetics and obesity [My Copy] Pharmacogenomics, Vol. 9, No. 12., pp. 1851-1860. by Reinhard Stoger posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:34:16 as
	GPAT: retrieval of genomic annotation from large genomic position datasets. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by A. Krebs, M. Frontini, L. Tora posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:33:37 as along with 5 people and 1 group guhjy druvus ghattem fhalbrit neils SIMR bioinformatics
	ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Nodin Weddington, Alexander Stuy, Ichiro Hiratani, Tyrone Ryba, Tomoki Yokochi, David M. Gilbert posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:33:05 as along with 1 person and 1 group cisevol JLab
	De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads. [My Copy] FEMS microbiology letters (9 December 2008) by Rhys A A. Farrer, Eric Kemen, Jonathan D G D. Jones, David J J. Studholme posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:32:27 as along with 9 people and 2 groups shabhonam pachorip sandfire natstreet Huub_odc usagi-kirin GustavoLacerda malcook druvus microbiology_nijmegen SIMR bioinformatics
	Aberrant chromatin at genes encoding stem cell regulators in human mixed-lineage leukemia. [My Copy] Genes & development, Vol. 22, No. 24. (15 December 2008), pp. 3403-3408. by M. G. Guenther, L. N. Lawton, T. Rozovskaia, et al.G. M. Frampton, S. S. Levine, T. L. Volkert, C. M. Croce, T. Nakamura, E. Canaani, R. A. Young posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:31:55 as
	Alphavirus-derived small RNAs modulate pathogenesis in disease vector mosquitoes [My Copy] Proceedings of the National Academy of Sciences (1 December 2008) by Kevin M. Myles, Michael R. Wiley, Elaine M. Morazzani, Zach N. Adelman posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:31:16 as along with 4 people and 1 group memerman shuzhens wsjames jjrohal Oxford Virology
	Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing. [My Copy] Nature methods, Vol. 6, No. 1. (14 January 2009), pp. 67-69. by Chad Nusbaum, Toshiro K. Ohsumi, James Gomez, et al.John Aquadro, Thomas C. Victor, Robert M. Warren, Deborah T. Hung, Bruce W. Birren, Eric S. Lander, David B. Jaffe posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:30:27 as along with 5 people seninp dakelley natstreet druvus jbhiatt
	The genome of a lepidopteran model insect, the silkworm Bombyx mori [My Copy] Insect Biochemistry and Molecular Biology, Vol. 38, No. 12. (16 December 2008), pp. 1036-1045. by The International Silkworm Genome posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:29:36 as along with 1 person operon
	Prediction of regulatory elements in mammalian genomes using chromatin signatures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 547. by Kyoung J. Won, Iouri Chepelev, Bing Ren, Wei Wang posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:29:00 as along with 4 people and 1 group tonamswish WanderingAengus polivares taguchi JLab
	Annotating genomes with massive-scale RNA sequencing. [My Copy] Genome biology, Vol. 9, No. 12. (2008), R175. by France Denoeud, Jean-Marc M. Aury, Corinne Da Silva, et al.Benjamin Noel, Odile Rogier, Massimo Delledonne, Michele Morgante, Giorgio Valle, Patrick Wincker, Claude Scarpelli, Olivier Jaillon, François Artiguenave posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:28:23 as along with 20 people and 1 group hzoltan cthachuk GustavoLacerda jamselem n00c jonilaserson ghattem nlapalu jmcq dandaman dakelley inesdesantiago mhamada pengchy balicea fhalbrit GeeSharpMinor natstreet druvus neils SIMR bioinformatics
	TRANSCRIPTION: Gene Expression--Where to Start? [My Copy] Science, Vol. 322, No. 5909. (19 December 2008), pp. 1804-1805. by Stephen Buratowski posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:27:41 as along with 5 people and 1 group tonamswish fhalbrit margaritis inesdesantiago skoch3 Koch_Lab
	Deletion of Dicer in somatic cells of the female reproductive tract causes sterility. [My Copy] Molecular endocrinology (Baltimore, Md.), Vol. 22, No. 10. (October 2008), pp. 2336-2352. by A. K. Nagaraja, C. Andreu-Vieyra, H. L. Franco, et al.L. Ma, R. Chen, D. Y. Han, H. Zhu, J. E. Agno, P. H. Gunaratne, F. J. DeMayo, M. M. Matzuk posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:27:02 as
	Dynamic regulation of Pdx1 enhancers by Foxa1 and Foxa2 is essential for pancreas development. [My Copy] Genes & development, Vol. 22, No. 24. (15 December 2008), pp. 3435-3448. by N. Gao, J. Lelay, M. Z. Vatamaniuk, S. Rieck, J. R. Friedman, K. H. Kaestner posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:24:44 as
	Using retroviruses as a mutagenesis tool to explore the zebrafish genome. [My Copy] Briefings in functional genomics & proteomics, Vol. 7, No. 6. (November 2008), pp. 427-443. by L. E. Jao, L. Maddison, W. Chen, S. M. Burgess posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:24:08 as along with 1 person guhjy
	An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs) [My Copy] Genome Research, Vol. 18, No. 9. (24 September 2008), pp. 1518-1529. by Vardhman K. Rakyan, Thomas A. Down, Natalie P. Thorne, et al.Paul Flicek, Eugene Kulesha, Stefan GrÃ¤f, Eleni M. Tomazou, Liselotte BÃ¤ckdahl, Nathan Johnson, Marlis Herberth, Kevin L. Howe, David K. Jackson, Marcos M. Miretti, Heike Fiegler, John C. Marioni, Ewan Birney, Tim J. P. Hubbard, Nigel P. Carter, Simon TavarÃ©, Stephan Beck posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:23:20 as along with 8 people suizifish timhubbard iris42 huiminC oelemento rschulz vega niallhaslam
	Towards a mutation in every gene in Caenorhabditis elegans. [My Copy] Brief Funct Genomic Proteomic (2008) by D. G. Moerman, R. J. Barstead posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:22:40 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	Board-invited review: Applications of genomic information in livestock. [My Copy] Journal of animal science, Vol. 85, No. 12. (December 2007), pp. 3148-3158. by E. M. Sellner, J. W. Kim, M. C. McClure, K. H. Taylor, R. D. Schnabel, J. F. Taylor posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:21:46 as
	Tuberculosis. Few mutations divide some drug-resistant TB strains. [My Copy] Science (New York, N.Y.), Vol. 318, No. 5852. (9 November 2007), pp. 901-902. by R. Koenig posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:21:06 as
	Emerging gene knockout technology in zebrafish: zinc-finger nucleases [My Copy] Brief Funct Genomic Proteomic, Vol. 7, No. 6. (1 November 2008), pp. 460-464. by Sharon L. Amacher posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:19:54 as along with 1 person guhjy
	Chop it, ChIP it, check it: the current status of chromatin immunoprecipitation. [My Copy] Front Biosci, Vol. 13 (2008), pp. 929-943. by P. Collas, J. A. Dahl posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:18:31 as along with 1 person and 1 group skoch3 Koch_Lab
	Comparing platforms for C. elegans mutant identification using high-throughput whole-genome sequencing. [My Copy] PloS one, Vol. 3, No. 12. (24 December 2008), e4012. by Yufeng Shen, Sumeet Sarin, Ye Liu, Oliver Hobert, Itsik Pe'er posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:16:29 as along with 4 people jmanning2k sameersoi usagi-kirin druvus
	A regulatory interplay between miR-27a and Runx1 during megakaryopoiesis. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 1. (6 January 2009), pp. 238-243. by O. Ben-Ami, N. Pencovich, J. Lotem, D. Levanon, Y. Groner posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:15:31 as along with 2 people and 1 group tonamswish valeriehilgers microRNA
	Synergy of two reference genomes for the grass family. [My Copy] Plant physiology, Vol. 149, No. 1. (January 2009), pp. 117-124. by J. Messing posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:14:10 as along with 1 person druvus
	Critical role for the transcription regulator CCCTC-binding factor in the control of Th2 cytokine expression. [My Copy] Journal of immunology (Baltimore, Md. : 1950), Vol. 182, No. 2. (15 January 2009), pp. 999-1010. by C. Ribeiro de Almeida, H. Heath, S. Krpic, et al.G. M. Dingjan, J. P. van Hamburg, I. Bergen, S. van de Nobelen, F. Sleutels, F. Grosveld, N. Galjart, R. W. Hendriks posted to genome-analyzer illumina sequencing solexa by abizar on 2009-01-25 21:12:36 as along with 1 person and 1 group sebastien_vigneau CTCF
	Discovery of Plant MicroRNAs and Short-Interfering RNAs by Deep Parallel Sequencing. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 495 (2009), pp. 1-12. by P. Chellappan, H. Jin posted to genome-analyzer sequencing solexa analyzer illumina by abizar on 2009-01-25 21:06:52 as along with 3 people pengchy natstreet druvus
	MotifMap: a human genome-wide map of candidate regulatory motif sites [My Copy] Bioinformatics, Vol. 25, No. 2. (15 January 2009), pp. 167-174. by Xiaohui Xie, Paul Rigor, Pierre Baldi posted to analyzer illumina sequencing solexa genome-analyzer by abizar on 2009-01-25 21:05:03 as along with 12 people bsamal jakebiesinger kmdaily guhjy wowalz ilyashl jfr heliopais nklee idonaldson nuin djkt
	The Dynamics and Time Scale of Ongoing Genomic Erosion in Symbiotic Bacteria [My Copy] Science, Vol. 323, No. 5912. (16 January 2009), pp. 379-382. by Nancy A. Moran, Heather J. Mclaughlin, Rotem Sorek posted to genome-analyzer sequencing solexa analyzer illumina by abizar on 2009-01-25 21:00:33 as along with 7 people and 2 groups kinestetika JeremyZucker emptyhb behindtherabbit bpb pansapiens djkt MetabolicModeling iSEEM
	Epigenetic and microRNA-mediated regulation in diabetes [My Copy] Nephrol. Dial. Transplant., Vol. 24, No. 4. (1 April 2009), pp. 1088-1096. by Pirkko Muhonen, Harry Holthofer posted to analyzer illumina sequencing solexa genome-analyzer by abizar on 2009-01-25 20:59:00 as along with 2 people guhjy Terkko
	De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae. [My Copy] Genome research In Genome Research, Vol. 19, No. 2. (17 February 2009), pp. 294-305. by Josephine A. Reinhardt, David A. Baltrus, Marc T. Nishimura, William R. Jeck, Corbin D. Jones, Jeffery L. Dangl posted to sequencing solexa analyzer genome-analyzer illumina by abizar on 2009-01-25 20:56:19 as along with 16 people and 2 groups GustavoLacerda darian n00c michaelbarton pachorip ThomasDOtto robsyme orzenil AaronDarling druvus dakelley Huub_odc usagi-kirin acn jbhiatt hpaces SIMR bioinformatics Bioinformatics
	DGCR8-dependent microRNA biogenesis is essential for skin development. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (29 December 2008) by Rui Yi, H Amalia A. Pasolli, Markus Landthaler, et al.Markus Hafner, Tolulope Ojo, Robert Sheridan, Chris Sander, Donal O'Carroll, Markus Stoffel, Thomas Tuschl, Elaine Fuchs posted to analyzer illumina sequencing solexa genome-analyzer by abizar on 2009-01-25 20:54:19 as along with 1 person valeriehilgers
	Genome-wide identification of DNA-protein interactions using chromatin immunoprecipitation coupled with flow cell sequencing. [My Copy] The Journal of endocrinology, Vol. 201, No. 1. (1 April 2009), pp. 1-13. by Brad G. Hoffman, Steven J. Jones posted to sequencing solexa analyzer illumina genome-analyzer by abizar on 2009-01-25 20:51:38 as along with 3 people stubrown inesdesantiago guhjy
	Transcriptome sequencing to detect gene fusions in cancer. [My Copy] Nature, Vol. 458, No. 7234. (5 March 2009), pp. 97-101. by Christopher A. Maher, Chandan Kumar-Sinha, Xuhong Cao, et al.Shanker Kalyana-Sundaram, Bo Han, Xiaojun Jing, Lee Sam, Terrence Barrette, Nallasivam Palanisamy, Arul M. Chinnaiyan posted to analyzer illumina sequencing solexa genome-analyzer by abizar on 2009-01-25 20:50:07 as along with 18 people fishtank hzoltan manduca stubrown ajbattle frohike torfinnnome jessopher guhjy jfr burak myzhang inesdesantiago dswan fenghezi jbhiatt mtagaya xingxu
	Personal genomes: The case of the missing heritability. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 18-21. by Brendan Maher posted to analyzer illumina sequencing solexa genome-analyzer by abizar on 2009-01-25 20:49:10 as along with 2 people daforerog psique
	Short-Read Sequencing Technologies for Transcriptional Analyses [My Copy] Annual Review of Plant Biology, Vol. 60, No. 1. (9 January 2009), pp. 305-333. by Stacey A. Simon, Jixian Zhai, Raja S. Nandety, et al.Kevin P. McCormick, Jia Zeng, Diego Mejia, Blake C. Meyers posted to genome-analyzer sequencing solexa analyzer illumina by abizar on 2009-01-25 20:48:35 as along with 7 people n00c darian giovenko heliopais manduca GeeSharpMinor orzenil
	ELT-2 is the predominant transcription factor controlling differentiation and function of the C. elegans intestine, from embryo to adult. [My Copy] Developmental biology (9 December 2008) by James D D. McGhee, Tetsunari Fukushige, Michael W W. Krause, et al.Stephanie E E. Minnema, Barbara Goszczynski, Jeb Gaudet, Yuji Kohara, Olaf Bossinger, Yongjun Zhao, Jaswinder Khattra, Martin Hirst, Steven J M J. Jones, Marco A A. Marra, Peter Ruzanov, Adam Warner, Richard Zapf, Donald G G. Moerman, John M M. Kalb posted to genome-analyzer sequencing solexa analyzer illumina by abizar on 2009-01-25 20:48:02 as
	Sequencing the Full-Length of the Phosphatase and Tensin Homolog (PTEN) Gene in Hepatocellular Carcinoma (HCC) Using the 454 GS20 and Illumina GA DNA Sequencing Platforms [My Copy] World Journal of Surgery by Joel Rodriguez, Jacfranz Guiteau, Lynne Nazareth, et al.Jeff Reid, John Goss, Richard Gibbs, Marie-Claude Gingras posted to analyzer illumina sequencing solexa genome-analyzer by abizar on 2009-01-25 20:46:35 as
	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. [My Copy] Nature biotechnology, Vol. 27, No. 1. (04 January 2009), pp. 66-75. by Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach, et al.Zhengdong D. Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder, Mark B. Gerstein posted to sequencing solexa analyzer illumina genome-analyzer by abizar on 2009-01-25 20:45:35 as along with 19 people and 1 group bedo hzoltan fpattyn gdb huali ewilban1 fenghezi smiddha jfr bertelsen JeremyZucker cassj inesdesantiago dakelley ghattem polivares idonaldson WanderingAengus guhjy SIMR bioinformatics
	Human pluripotent stem cells: current status and future perspectives. [My Copy] The Chinese journal of physiology, Vol. 51, No. 4. (31 August 2008), pp. 214-225. by C. F. Kao, C. Y. Chuang, C. H. Chen, H. C. Kuo posted to sequencing solexa analyzer illumina genome-analyzer by abizar on 2009-01-25 20:44:10 as
	Characterization and comparative profiling of the small RNA transcriptomes in two phases of locust [My Copy] Genome Biology, Vol. 10 (16 January 2009), R6. by Yuanyuan, Le Kang posted to analyzer illumina sequencing solexa genome-analyzer by abizar on 2009-01-25 20:43:32 as along with 1 person samgj
	Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing. [My Copy] BMC genomics, Vol. 10 (21 January 2009), 37. by Philippe Lefrançois, Ghia M. Euskirchen, Raymond K. Auerbach, et al.Joel Rozowsky, Theodore Gibson, Christopher M. Yellman, Mark Gerstein, Michael Snyder posted to genome-analyzer analyzer illumina sequencing solexa by abizar on 2009-01-25 20:42:22 as along with 5 people Vincent_Rouilly guhjy lusk emptyhb WanderingAengus
	Genomic tools for dissecting oncogenic transcriptional networks in human leukemia [My Copy] Leukemia, Vol. 23, No. 7. (22 January 2009), pp. 1236-1242. by T. Palomero, A. A. Ferrando posted to sequencing solexa analyzer illumina genome-analyzer by abizar on 2009-01-25 20:40:39 as along with 1 person stubrown
	Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi [My Copy] BMC Genomics, Vol. 10 (21 January 2009), 36. by Kathryn, Julian Parkhill posted to analyzer illumina sequencing solexa genome-analyzer by abizar on 2009-01-25 20:40:02 as along with 2 people ewilban1 druvus