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Tag genomic [128 articles]

Recent papers classified by the tag genomic.
  • Genomic rearrangements and gene copy-number alterations as a cause of nervous system disorders.
    Neuron, Vol. 52, No. 1. (5 October 2006), pp. 103-121.
    by JA Lee, JR Lupski
    posted to genomic rearrangements by yunyan0201 on 2006-12-02 11:56:36 as ***
  • The Nucleosome - From Genomic Organization to Genomic Regulation
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 259-272.
    by S Khorasanizadeh
    posted to genomic nucleosome organization regulation review by xico on 2006-03-07 01:44:17 as *** along with 2 people and 1 group imouthesmp gloria WetBiology
  • Taxonomic Studies of Rickettsiella, Rickettsia, and Chlamydia Using Genomic DNA
    Journal of Invertebrate Pathology, Vol. 63, No. 3. (May 1994), pp. 294-300.
    by Roger Frutos, Brian A Federici, Bernard Revet, Max Bergoin
    posted to chlamydia coxiella dna genomic of relatedness rickettsia rickettsiella species by vhphys on 2008-03-11 10:49:20 as **
  • Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites.
    Genome Res (8 September 2006)
    by George A A Follows, Pawan Dhami, Berthold Göttgens, Alexander W W Bruce, Peter J J Campbell, Shane C C Dillon, Aileen M M Smith, Christoph Koch, Ian J J Donaldson, Mike A A Scott, Ian Dunham, Mary E E Janes, David Vetrie, Anthony R R Green
    posted to dnasei genomic hypersensitive microarray site by uz_labu_laimi on 2007-03-04 05:05:56 as read along with 1 person and 1 group dpollard EisenLab
  • Array comparative genomic hybridization and its applications in cancer.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by D Pinkel, DG Albertson
    posted to cancer cgh comparative genomic hybridization microarray by tvdbulck on 2008-03-21 14:21:33 as ** along with 6 people and 3 groups textoris rfrousse pcahan1 archroad rdiaz frohike Institut_Hemato_Oncologie_Pediatrique Neuroblastome_SFCE Bioinformatics
  • The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata.
    Nucleic acids research, Vol. 36, No. Database issue. (January 2008)
    by K Liolios, K Mavromatis, N Tavernarakis, NC Kyrpides
    posted to databases genomic r21 by stsaft on 2008-06-09 21:50:22 as ** along with 1 person jmeppley
  • Genomic analysis.
    Current opinion in biotechnology, Vol. 11, No. 2. (April 2000), pp. 171-175.
    by PS Lee, KH Lee
    posted to analysis genomic review by stsaft on 2008-06-12 20:02:35 as **
  • Genetical genomics: use all data
    BMC Genomics, Vol. 8 (12 March 2007), 69.
    by Miguel Perez-Enciso, Jose R Quevedo, Antonio Bahamonde
    posted to genetic genomic by steff83 on 2007-06-29 11:32:33 as ** along with 5 people ccots Ayest qfwills jo_davies caseybrown
  • notes Indexing genomic sequence libraries
    Information Processing & Management, Vol. 41, No. 2. (March 2005), pp. 265-274.
    by Kevin C O'Kane, Matthew J Lockner
    posted to genomic indexing libraries sequence by sriks6711 on 2004-12-09 00:19:00
  • A genome-wide scan of 1842 DNA markers for allelic associations with general cognitive ability: a five-stage design using DNA pooling and extreme selected groups.
    Behav Genet, Vol. 31, No. 6. (November 2001), pp. 497-509.
    by R Plomin, L Hill, IW Craig, P McGuffin, S Purcell, P Sham, D Lubinski, LA Thompson, PJ Fisher, D Turic, MJ Owen
    posted to dna genomic by ShraddhaDTrivedi on 2008-02-18 02:30:39 as ** along with 1 person cassandragould
  • Mauve: multiple alignment of conserved genomic sequence with rearrangements.
    Genome Res, Vol. 14, No. 7. (July 2004), pp. 1394-1403.
    by AC Darling, B Mau, FR Blattner, NT Perna
    posted to genomic comparisons by semrich on 2008-09-14 20:06:23 as ***** along with 9 people and 1 group Neeperando bcondon operon catmat AaronDarling leelarcombe azazello mariakmejia druvus gatech-compgenomics
  • Identifying disease-causal genes using Semantic Web-based representation of integrated genomic and phenomic knowledge.
    Journal of biomedical informatics (23 August 2008)
    by Ranga Chandra C Gudivada, Xiaoyan A A Qu, Jing Chen, Anil G G Jegga, Eric K K Neumann, Bruce J J Aronow
    posted to knowledge integration genomic by SaraNasser on 2008-10-03 13:38:33 as ** along with 1 person jyuh
  • Association of KCNQ1, KCNE1, KCNH2 and SCN5A polymorphisms with QTc interval length in a healthy population
    European Journal of Human Genetics, Vol. aop, No. current.
    by Laetitia Gouas, Viviane Nicaud, Myriam Berthet, Anne Forhan, Laurence Tiret, Beverley Balkau, Pascale Guicheney,
    posted to bioinformatics cardiac disease gene genomic by sancho on 2007-11-29 22:30:29 as ***
  • LASSO-Patternsearch algorithm with application to ophthalmology data
    (30 Oct 2006)
    by Weiliang Shi, Grace Wahba, Stephen Wright, Kristine Lee, Ronald Klein, Barbara Klein
    posted to algorithm genomic lasso ophthalmology patternsearch by rayzhang on 2008-03-08 21:11:32 as *****
  • Comprehensive copy number profiles of breast cancer cell model genomes.
    Breast Cancer Res, Vol. 8, No. 1. (2006)
    by A Shadeo, WL Lam
    posted to breast genomic by pjasper on 2007-04-25 16:08:43 as ** along with 2 people rdiaz vega
  • Genetics of inflammatory bowel disease: clues to pathogenesis
    Br Med Bull (27 August 2008), ldn031.
    by Hu Zhang, Dunecan Massey, Mark Tremelling, Miles Parkes
    posted to genomic ibd il23 nod2 uc by pathanaway on 2008-08-29 00:35:22 as ***
  • Unraveling microbial interactions in food fermentations; from classical to genomics approaches
    Appl. Environ. Microbiol. (20 June 2008), AEM.00113-08.
    by Sander Sieuwerts, Frank A de Bok, Jeroen Hugenholtz, van Hylckama
    posted to fermentation genomic metabolism review by Pascalichouchou on 2008-06-21 15:28:30 as **
  • Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays
    Nature Genetics, Vol. 36, No. 12. (14 November 2004), 1331.
    by Sonali Mukherjee, Michael F Berger, Ghil Jona, Xun S Wang, Dale Muzzey, Michael Snyder, Richard A Young, Martha L Bulyk
    posted to cell comparative cycle genomic yeast by nklee on 2008-01-01 05:28:00 as ** along with 5 people johncumbers olympos emptyhb yevishere kristallreiner
  • Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach.
    Genome Biol, Vol. 6, No. 2. (2005)
    by O Elemento, S Tavazoie
    posted to comprative genomic by nklee on 2008-05-09 01:08:22 as ** along with 2 people and 2 groups indigoviolet grahamc EisenLab ParkinsonLab_at_MaRS
  • Eukaryotic Regulatory Element Conservation Analysis and Identification Using Comparative Genomics
    Genome Res., Vol. 14, No. 3. (1 March 2004), pp. 451-458.
    by Yueyi Liu, Shirley X Liu, Liping Wei, Russ B Altman, Serafim Batzoglou
    posted to comparative genomic yeast by nklee on 2008-01-01 23:45:44 as ** along with 3 people lyongu gpalidwor dquest
  • Qualifying the relationship between sequence conservation and molecular function
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 201-205.
    by Gregory M Cooper, Christopher D Brown
    posted to comparative conservation genomic by nklee on 2008-04-28 03:31:33 as ** along with 5 people aprasad brant djkt xingxu bpcusack
  • Algorithms for phylogenetic footprinting.
    J Comput Biol, Vol. 9, No. 2. (2002), pp. 211-223.
    by M Blanchette, B Schwikowski, M Tompa
    posted to genomic footprinting comparative by nklee on 2008-09-30 04:43:53 as ** along with 2 people chad_davis dquest
  • Large-scale Cis-element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea.
    Plant Physiol (6 October 2006)
    by Georg Haberer, Michael T T Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus Fx F Mayer
    posted to comparative genomic plant by nklee on 2008-01-10 02:36:09 as ** along with 4 people and 1 group dpollard xwbcn kengg xili03 EisenLab
  • Comparative genomics.
    PLoS Biol, Vol. 1, No. 2. (November 2003)
    by RC Hardison
    posted to comparative genomic by nklee on 2007-11-04 23:33:35 as ** along with 4 people and 1 group aprasad axelon beatrizfernandez Neeperando Microbial-Ecology
  • Transcriptional regulatory networks in Saccharomyces cerevisiae.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804.
    by TI Lee, NJ Rinaldi, F Robert, DT Odom, Z Bar-Joseph, GK Gerber, NM Hannett, CT Harbison, CM Thompson, I Simon, J Zeitlinger, EG Jennings, HL Murray, DB Gordon, B Ren, JJ Wyrick, JB Tagne, TL Volkert, E Fraenkel, DK Gifford, RA Young
    posted to genomic yeast by nklee on 2008-01-01 23:51:40 as *** along with 26 people and 2 groups camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
  • Computation and Analysis of Genomis Multi-Sequence Alignments.
    Annu Rev Genomics Hum Genet (9 May 2007)
    by Mathieu Blanchette
    posted to alignment comparative genomic multiple sequence by nklee on 2008-01-01 23:32:50 as ** along with 4 people and 1 group dpollard lilou maximilianh aprasad EisenLab
  • Transcriptional regulatory code of a eukaryotic genome
    Nature, Vol. 431, No. 7004. (2004), pp. 99-104.
    by Christopher T Harbison, Benjamin D Gordon, Tong I Lee, Nicola J Rinaldi, Kenzie D Macisaac, Timothy W Danford, Nancy M Hannett, Jean-Bosco Tagne, David B Reynolds, Jane Yoo, Ezra G Jennings, Julia Zeitlinger, Dmitry K Pokholok, Manolis Kellis, Alex P Rolfe, Ken T Takusagawa, Eric S Lander, David K Gifford, Ernest Fraenkel, Richard A Young
    posted to comparative genomic yeast by nklee on 2008-01-01 23:42:51 as read along with 24 people and 8 groups alokm tuck chad_davis lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
  • 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
    Genome Res. (5 November 2007), gr.6761107.
    by Webb Miller, Kate Rosenbloom, Ross C Hardison, Minmei Hou, James Taylor, Brian Raney, Richard Burhans, David C King, Robert Baertsch, Daniel Blankenberg, Kosakovsky, Anton Nekrutenko, Belinda Giardine, Robert S Harris, Svitlana Tyekucheva, Mark Diekhans, Thomas H Pringle, William J Murphy, Arthur Lesk, George M Weinstock, Kerstin Lindblad-Toh, Richard A Gibbs, Eric S Lander, Adam Siepel, David Haussler, James W Kent
    posted to comparative genomic by nklee on 2008-01-01 01:09:30 as ** along with 10 people aprasad dchughes maximilianh idonaldson fpattyn gjuggler clearbluespring joavah AaronDarling jyuh
  • A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome.
    J Mol Biol, Vol. 284, No. 2. (27 November 1998), pp. 241-254.
    by K Robison, AM McGuire, GM Church
    posted to comparative ecoli footprinting genomic by nklee on 2008-01-02 23:09:01 as ** along with 1 person kaarsinogen
  • Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
    Genome Res., Vol. 17, No. 11. (1 November 2007), pp. 1603-1613.
    by Laurie Gordon, Shan Yang, Mary Tran-Gyamfi, Dan Baggott, Mari Christensen, Aaron Hamilton, Richard Crooijmans, Martien Groenen, Susan Lucas, Ivan Ovcharenko, Lisa Stubbs
    posted to comparative genomic by nklee on 2008-01-01 01:10:57 as ** along with 1 person maximilianh
  • A novel approach to identifying regulatory motifs in distantly related genomes
    Genome Biology, Vol. 6, No. 13. (2005)
    by Ruth Van Hellemont, Pieter Monsieurs, Gert Thijs, Bart De Moor, Yves Van de Peer, Kathleen Marchal
    posted to clustering comparative footprinting genomic by nklee on 2008-01-31 04:19:31 as ***
  • GAPP: A Fully Automated Software for the Confident Identification of Human Peptides from Tandem Mass Spectra
    J. Proteome Res., Vol. 5, No. 10. (6 October 2006), pp. 2849-2852.
    by I Shadforth, W Xu, D Crowther, C Bessant
    posted to annotation gapp genomic proteogenomics by nitiniitk on 2007-10-18 06:21:52 as ****
  • notes Metagenomic Analysis of the Human Distal Gut Microbiome
    Science, Vol. 312, No. 5778. (2 June 2006), pp. 1355-1359.
    by Steven R Gill, Mihai Pop, Robert T Deboy, Paul B Eckburg, Peter J Turnbaugh, Buck S Samuel, Jeffrey I Gordon, David A Relman, Claire M Fraser-Liggett, Karen E Nelson
    posted to genomic by neveaire on 2006-06-12 23:29:37 as *** along with 15 people and 9 groups Yanno ana dayjm jmeppley dchughes cmm hcmorton michC bluto azazello beatrizfernandez wenhan xingxu host-bacteria melissa_wos structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience FAB-lab G4ID Microbial-Ecology Genetics-of-Gambling
  • Inferring genetic networks and identifying compound mode of action via expression profiling.
    Science, Vol. 301, No. 5629. (4 July 2003), pp. 102-105.
    by TS Gardner, D di Bernardo, D Lorenz, JJ Collins
    posted to genomic networks by neveaire on 2007-02-13 23:19:07 as ** along with 10 people and 9 groups vertikalist rklancer kentsis dragonrez rhem1224 rubendrr adepace jayster4 heliopais roys BTS-PT-AS-CS Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
  • An evaluation of the draft human genome sequence
    Nat Genet, Vol. 29, No. 1. (2001), pp. 88-91.
    by Nicholas Katsanis, Kim C Worley, James R Lupski
    posted to genetics genomic by neveaire on 2006-06-30 02:28:27 as ** along with 4 groups Biostatistics Computational-Genomics Bioinformatics Neuroscience
  • Detection of parallel functional modules by comparative analysis of genome sequences
    Nature Biotechnology, Vol. 23, No. 2. (04 February 2005), pp. 253-260.
    by Huiying Li, Matteo Pellegrini, David Eisenberg
    posted to genomic by neveaire on 2006-05-17 10:44:18 as ** along with 1 person and 4 groups tmmurali Biostatistics Computational-Genomics Bioinformatics Neuroscience
  • The complete genome sequence of Mycobacterium avium subspecies paratuberculosis.
    Proc Natl Acad Sci U S A, Vol. 102, No. 35. (30 August 2005), pp. 12344-12349.
    by L Li, JP Bannantine, Q Zhang, A Amonsin, BJ May, D Alt, N Banerji, S Kanjilal, V Kapur
    posted to sequence genomic by naresh76 on 2007-02-07 15:50:09 as ***
  • Alu repeat analysis in the complete human genome: trends and variations with respect to genomic composition
    Bioinformatics, Vol. 20, No. 6. (12 April 2004), pp. 813-817.
    by Deepak Grover, Mitali Mukerji, Pankaj Bhatnagar, K Kannan, Samir K Brahmachari
    posted to alu composition genomic repeats by nagendraproj on 2007-01-08 08:32:38 as **** along with 1 person N0131826
  • The Origins of Eukaryotic Gene Structure
    Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 450-468.
    by Michael Lynch
    posted to evolution genomic by msierk on 2006-06-29 20:09:26 as *** along with 22 people and 9 groups karbak stevanspringer dayjm Ayest indigoviolet tny xwbcn dchughes petecl penka mtagaya madhadron cmm brixtonmc zhangli brettc web20student BioNica krishnaJCSG timflutre jwestbrook ArtemPankin EisenLab Computational_Systems_Biology Nie FAB-lab G4ID Bioinformatics_MDACC evo-devo King_Lab Genetics-of-Gambling
  • The importance of repairing stalled replication forks
    Nature, Vol. 404, No. 6773. (2 March 2000), pp. 37-41.
    by Michael M Cox, Myron F Goodman, Kenneth N Kreuzer, David J Sherratt, Steven J Sandler, Kenneth J Marians
    posted to d-loop genomic instability pria pric replication restart by MonkeyMan on 2007-06-22 23:35:45 as ** along with 1 group DNAGearHeads
  • The Disposition of Nascent Strands at Stalled Replication Forks Dictates the Pathway of Replisome Loading during Restart
    Molecular Cell, Vol. 17, No. 5. (4 March 2005), pp. 733-743.
    by Ryan C Heller, Kenneth J Marians
    posted to d-loop genomic instability pria pric replication restart by MonkeyMan on 2007-06-22 23:02:37 as read along with 1 group DNAGearHeads
  • An integrated genomic-based approach to individualized treatment of patients with advanced-stage ovarian cancer.
    J Clin Oncol, Vol. 25, No. 5. (10 February 2007), pp. 517-525.
    by HK Dressman, A Berchuck, G Chan, J Zhai, A Bild, R Sayer, J Cragun, J Clarke, RS Whitaker, L Li, J Gray, J Marks, GS Ginsburg, A Potti, M West, JR Nevins, JM Lancaster
    posted to affymetrix cancer chemotherapeutics expression genomic individualized ovarian treatment women by mgaldzic on 2007-02-14 04:33:30 as ** along with 1 person and 1 group frohike CHIP
  • Genomic signatures to guide the use of chemotherapeutics.
    Nat Med (22 October 2006)
    by Anil Potti, Holly K K Dressman, Andrea Bild, Richard F F Riedel, Gina Chan, Robyn Sayer, Janiel Cragun, Hope Cottrill, Michael J J Kelley, Rebecca Petersen, David Harpole, Jeffrey Marks, Andrew Berchuck, Geoffrey S S Ginsburg, Phillip Febbo, Johnathan Lancaster, Joseph R R Nevins
    posted to chemotherapeutics expression genomic profile signature therapy by mgaldzic on 2007-02-14 04:27:24 as ** along with 5 people and 3 groups jyuh kengg giovanni frohike jfr GeschwindLab CHIP Plantandetc
  • Mutations in autism susceptibility candidate 2 (AUTS2) in patients with mental retardation.
    Hum Genet (9 January 2007)
    by Vera M Kalscheuer, David Fitzpatrick, Niels Tommerup, Merete Bugge, Erik Niebuhr, Luitgard M Neumann, Andreas Tzschach, Sarah A Shoichet, Corinna Menzel, Fikret Erdogan, Ger Arkesteijn, Hans-Hilger H Ropers, Reinhard Ullmann
    posted to translocation genomic autism 7q11 by mgaldzic on 2007-01-11 22:57:02 as ** along with 1 group CHIP
  • A statistical framework for genomic data fusion.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635.
    by GR Lanckriet, T De Bie, N Cristianini, MI Jordan, WS Noble
    posted to data fusion genomic nazanin by mdstobbe on 2008-08-21 11:04:34 as ** along with 6 people tmmurali jfr mbeautru nedwards carlk ptrobajo
  • Systematic identification of human mitochondrial disease genes through integrative genomics
    Nature Genetics, Vol. 38, No. 5. (02 April 2006), pp. 576-582.
    by Sarah Calvo, Mohit Jain, Xiaohui Xie, Sunil A Sheth, Betty Chang, Olga A Goldberger, Antonella Spinazzola, Massimo Zeviani, Steven A Carr, Vamsi K Mootha
    posted to genomic integrative mitochondrial nazanin by mdstobbe on 2008-08-21 11:07:45 as ** along with 5 people and 1 group kentsis balicea nirfriedman raiyar ptrobajo steinmetzlab
  • Expression Profiles of Bovine Genes in the Rectoanal Junction Mucosa during Colonization with Escherichia coli O157:H7
    Appl. Environ. Microbiol., Vol. 73, No. 7. (1 April 2007), pp. 2380-2385.
    by Jie Li, Carolyn J Hovde
    posted to to response o157 genomic e coli bovine by lag12345 on 2008-09-16 22:11:18 as read
  • notes Genome-wide non-mendelian inheritance of extra-genomic information in Arabidopsis
    Nature, Vol. aop, No. current. (23 March 2005)
    by Susan J Lolle, Jennifer L Victor, Jessica M Young, Robert E Pruitt
    posted to dna evolution genomic inheritance by krokicki on 2007-08-24 16:15:33 as ** along with 8 people and 1 group mfenner ryang mtagaya cmm bluto calamar cabbagezs bpcusack FAB-lab
  • Finishing the euchromatic sequence of the human genome.
    Nature, Vol. 431, No. 7011. (21 October 2004), pp. 931-945.
    by
    posted to genomic sequencing thesis by joshuashen on 2006-11-20 04:37:59 as ** along with 11 people and 2 groups setar Cortel aprasad dullhunk hdopazo caporaso nickluscombe tvdbulck antonkratz shikin blackm0k biomedical-nlp EBI-regulation
  • Genomic rearrangements in the spotlight
    Nature Genetics, Vol. 40, No. 1., pp. 6-7.
    by Lucy R Osborne
    posted to genomic rearrangements by jlangdon on 2008-01-25 11:08:50 as **** along with 1 person ealloza
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