Tag gibbs [123 articles] Export

Recent papers classified by the tag gibbs.

	An approximative approach to construction of the Glauber dynamics in continuum [My Copy] (22 Oct 2009) by Dmitri Finkelshtein, Yuri Kondratiev, Oleksandr Kutoviy, Elena Zhizhina posted to point-process gibbs by ansobol on 2009-10-23 05:39:42 as
	Problem of equilibration and the computation of correlation functions on a quantum computer [My Copy] Physical Review A, Vol. 61, No. 2. (4 January 2000), 022301. by Barbara M. Terhal, David P. Divincenzo posted to thermal quantum phase gibbs estimation algorithm by citeUlike123 on 2009-09-22 17:42:28 as along with 1 person Kitty
	What is Cooperativity? [My Copy] Angewandte Chemie International Edition, Vol. 9999, No. 9999. (2009), NA. by Christopher A. Hunter, Harry L. Anderson posted to useful hunter gibbs fundamental entropy enthalpy by dr_proton on 2009-09-15 11:28:23 as along with 1 person kevinchannon
	Accelerated sampling for the Indian Buffet Process [My Copy] In ICML '09: Proceedings of the 26th Annual International Conference on Machine Learning (2009), pp. 273-280. by Finale D. Velez, Zoubin Ghahramani posted to sampling process prior nonparametric inference indian-buffet-process gibbs bayesian by bertelsen on 2009-09-08 20:35:56 as along with 1 person jmstat
	Examples of adaptive MCMC [My Copy] Journal of Computational and Graphical Statistics, Vol. 18, No. 2. (June 2009), pp. 349-367. by Gareth O. Roberts, Jeffrey S. Rosenthal posted to metropolis mcmc gibbs adaptive 2009 by ddahlem on 2009-09-06 16:43:20 as
	Bayesian Inference for Generalized Linear and Proportional Hazards Models via Gibbs Sampling [My Copy] Journal of the Royal Statistical Society. Series C (Applied Statistics), Vol. 42, No. 3. (1993), pp. 443-459. by P. Dellaportas, A. F. M. Smith posted to linear gibbs bayes by reconnie on 2009-08-25 02:26:03 as
	info-gibbs: a motif discovery algorithm that directly optimizes information content during sampling [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2715-2722. by Matthieu Defrance, Jacques van Helden posted to motifs gibbs discovery by nuin on 2009-08-20 22:04:39 as along with 3 people maximilianh TRHvidsten natstreet
	Gibbs point processes for studying the development of spatial-temporal stochastic processes [My Copy] Computational Statistics & Data Analysis, Vol. 36, No. 1. (28 March 2001), pp. 85-105. by E. Renshaw posted to point-process gibbs by ansobol on 2009-08-20 13:06:22 as
	Gibbs motif sampling: detection of bacterial outer membrane protein repeats. [My Copy] Protein science : a publication of the Protein Society, Vol. 4, No. 8. (August 1995), pp. 1618-1632. by A. F. Neuwald, J. S. Liu, C. E. Lawrence posted to gibbs by Baschl on 2009-08-04 19:09:45 as along with 1 person xiaobeizhao
	Aromatic interactions [My Copy] J. Chem. Soc., Perkin Trans. 2, No. 5. (2001), pp. 651-669. by Christopher A. Hunter, Kevin R. Lawson, Julie Perkins, Christopher J. Urch posted to aromatic-interactions deltag enthalpy entropy fundamental gibbs hunter physchem physorg supramolecular useful by dr_proton on 2009-07-31 09:35:26 as
	Quantifying Intermolecular Interactions: Guidelines for the Molecular Recognition Toolbox [My Copy] Angewandte Chemie International Edition, Vol. 43, No. 40. (11 October 2004), pp. 5310-5324. by Christopher A. Hunter posted to enthalpy entropy gibbs hunter hydrogen-bond physchem physorg review supramolecular useful by dr_proton on 2009-07-31 09:33:59 as along with 2 people lillekatt daevans
	Desolvation tips the balance: solvent effects on aromatic interactions [My Copy] Chem. Commun., No. 36. (2006), pp. 3806-3808. by Scott L. Cockroft, Christopher A. Hunter posted to aromatic-interactions association deltag enthalpy entropy gibbs hunter physchem physorg supramolecular by dr_proton on 2009-07-31 09:28:11 as
	Substituent effects on aromatic stacking interactions [My Copy] Org. Biomol. Chem., Vol. 5, No. 7. (2007), pp. 1062-1080. by Scott L. Cockroft, Julie Perkins, Cristiano Zonta, et al.Harry Adams, Sharon E. Spey, Caroline M. R. Low, Jeremy G. Vinter, Kevin R. Lawson, Christopher J. Urch, Christopher A. Hunter posted to aromatic-interactions association double-mutant-cycle enthalpy entropy gibbs hunter physchem physorg by dr_proton on 2009-07-31 09:27:27 as
	Solvent Effects on Hydrogen Bonding13 [My Copy] Angewandte Chemie International Edition, Vol. 46, No. 20. (2007), pp. 3706-3709. by Joanne l, Christopher a, Caroline m, Alejandro Perez-Velasco, Jeremy g posted to association enthalpy entropy fundamental gibbs hunter hydrogen-bond physchem physorg by dr_proton on 2009-07-31 09:24:20 as
	The combination of transformed and constrained Gibbs energies [My Copy] Mathematical Biosciences, Vol. 220, No. 2. (08 August 2009), pp. 81-88. by Peter B. A. Blomberg, Pertti S. Koukkari posted to biophysics energy gibbs thermodynamics by jjray on 2009-07-24 16:25:39 as
	Theory of Free Energy and Entropy in Noncovalent Binding [My Copy] Chemical Reviews, Vol. 109, No. 9. (9 September 2009), pp. 4092-4107. by Huan-Xiang Zhou, Michael K. Gilson posted to association binding complex deltag enthalpy entropy gibbs physchem review supramolecular by dr_proton on 2009-07-22 08:59:31 as along with 6 people and 1 group cchang agrossfield anuragsethi sobolevnrm qshao paulschlesinger Chang group
	Structure-based Calculation of the Equilibrium Folding Pathway of Proteins. Correlation with Hydrogen Exchange Protection Factors [My Copy] Journal of Molecular Biology, Vol. 262, No. 5. (11 October 1996), pp. 756-772. by V. Hilser posted to conformational_ensemble corex gibbs protein_flexibility protein_folding by fl on 2009-07-15 09:45:35 as along with 1 person carlescorbi
	Gibbs Sampling Methods for Stick Breaking Priors [My Copy] Journal of the American Statistical Association (March 2001), pp. 161-173. by H. Ishwaran, James posted to bayesian gibbs prior sampling by bertelsen on 2009-07-10 12:26:10 as along with 1 person vlachmore
	Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images [My Copy] Pattern Analysis and Machine Intelligence, IEEE Transactions on In Pattern Analysis and Machine Intelligence, IEEE Transactions on, Vol. PAMI-6, No. 6. (1984), pp. 721-741. by Stuart Geman, Donald Geman posted to bayesian gibbs sampling stochastic by bertelsen on 2009-07-08 13:11:46 as
	Structural stability of binding sites: Consequences for binding affinity and allosteric effects [My Copy] Proteins: Structure, Function, and Genetics, Vol. 41, No. S4. (2000), pp. 63-71. by Irene Luque, Ernesto Freire posted to allosteric flexibility gibbs by fl on 2009-07-07 11:08:32 as along with 2 people allmensch aqeel
	Sampling-Based Approaches to Calculating Marginal Densities [My Copy] Journal of the American Statistical Association, Vol. 85, No. 410. (1990), pp. 398-409. by Alan E. Gelfand, Adrian F. M. Smith posted to gibbs sampling by carmenrg on 2009-06-16 17:00:25 as along with 3 people and 1 group gtaralds icosma plm SAA-HSA
	Stochastic relaxation, Gibbs distributions and the Bayesian restoration of images* [My Copy] Journal of Applied Statistics, Vol. 20, No. 5. (1993), pp. 25-62. by Stuart Geman, Donald Geman, K. Abend, T. J. Harley, L. N. Kanal posted to gibbs sampling by carmenrg on 2009-06-16 16:58:20 as along with 3 people oannes kshundyak sancho
	A Gibbs sampler for the identification of gene expression and network connectivity consistency [My Copy] Bioinformatics, Vol. 22, No. 24. (15 December 2006), pp. 3040-3046. by Brynildsen, P. Mark, Tran, M. Linh, Liao, C. James posted to chip-chip consistency gene-expression gibbs microarray network by bertelsen on 2009-06-13 11:49:16 as along with 1 person wenhan
	A self-contained guide to the CMB Gibbs sampler [My Copy] (23 May 2009) by Nicolaas E. Groeneboom posted to gibbs guide sampling by DavidePietrobon on 2009-05-27 15:09:26 as along with 1 person shanki
	Epistatic module detection for case-control studies: a Bayesian model with a Gibbs sampling strategy. [My Copy] PLoS genetics, Vol. 5, No. 5. (1 May 2009), e1000464. by Wanwan Tang, Xuebing Wu, Rui Jiang, Yanda Li posted to bayes control gibbs by nuin on 2009-05-25 18:23:15 as along with 5 people rdiaz guhjy bservin djkt psique
	Gibbs sampling approach for generation of truncated multivariate Gaussian random variables [My Copy] Acoustics, Speech, and Signal Processing, 1999. ICASSP '99. Proceedings., 1999 IEEE International Conference on In Acoustics, Speech, and Signal Processing, 1999. ICASSP '99. Proceedings., 1999 IEEE International Conference on, Vol. 3 (1999), pp. 1757-1760 vol.3. by J. H. Kotecha, P. M. Djuric posted to gaussian gibbs mulitvariate random sampling truncated by bertelsen on 2009-04-02 23:19:39 as
	Factorial hidden Markov models [My Copy] In Machine Learning, Vol. 29 (1997) by Zoubin Ghahramani, Michael I. Jordan posted to approximate em fhmm gibbs hmm inference by mconnor2 on 2009-02-27 18:12:19 as
	Object Extraction Using a Stochastic Birth-and-Death Dynamics in Continuum [My Copy] Journal of Mathematical Imaging and Vision by Xavier Descombes, Robert Minlos, Elena Zhizhina posted to gibbs image-processing markov random-field by ansobol on 2009-02-11 18:48:37 as
	Calculation of the Free Energy Equation Parameters from Ternary Liquid-Liquid Equilibrium Data [My Copy] Industrial & Engineering Chemistry Fundamentals, Vol. 16, No. 2. (1 May 1977), pp. 182-185. by Gabor Varhegyi, Claude H. Eon posted to gibbs lle optimization ternary by majdula on 2009-02-04 13:33:27 as
	Liquid-liquid equilibrium data: Their retrieval, correlation and prediction Part I: Retrieval [My Copy] Fluid Phase Equilibria, Vol. 2, No. 4. (1979), pp. 297-309. by J. Sørensen posted to data gibbs lle optimization retrieval by majdula on 2009-02-03 13:28:28 as
	Liquid-liquid equilibrium data: Their retrieval, correlation and prediction Part III: Prediction [My Copy] Fluid Phase Equilibria, Vol. 4, No. 1-2. (1980), pp. 151-163. by T. Magnussen posted to gibbs lle optimization prediction by majdula on 2009-02-03 13:26:54 as
	Liquid—liquid equilibrium data: Their retrieval, correlation and prediction Part II: Correlation [My Copy] Fluid Phase Equilibria, Vol. 3, No. 1. (1979), pp. 47-82. by J. M. Sørensen, T. Magnussen, P. Rasmussen, A. Fredenslund posted to correlation gibbs lle optimization by majdula on 2009-02-03 13:26:22 as
	Modeling of microemulsion phase diagrams from excess Gibbs energy models [My Copy] Chemical Engineering Journal, Vol. 84, No. 3. (15 December 2001), pp. 257-274. by F. García-Sánchez posted to excess gibbs model phase quaternary ternary by majdula on 2009-02-03 13:21:23 as
	An excess Gibbs energy model to study the phase behavior of aqueous two-phase systems of polyethylene glycol+dextran [My Copy] Fluid Phase Equilibria, Vol. 171, No. 1-2. (28 May 2000), pp. 77-90. by A. Haghtalab posted to excess gibbs model optimization ternary by majdula on 2009-02-03 12:56:46 as
	Decoding human regulatory circuits. [My Copy] Genome Res, Vol. 14, No. 10A. (October 2004), pp. 1967-1974. by W. Thompson, M. J. Palumbo, W. W. Wasserman, J. S. Liu, C. E. Lawrence posted to gibbs recursive sampler by Mehlhorn on 2008-12-08 17:19:37 as along with 1 person and 1 group indigoviolet EisenLab
	Gibbs Recursive Sampler: finding transcription factor binding sites [My Copy] Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3580-3585. by William Thompson, Eric C. Rouchka, Charles E. Lawrence posted to gibbs recursive sampler by Mehlhorn on 2008-12-08 17:07:36 as along with 8 people Dulce wowalz jmartin49 lyongu dquest daniel_quest johncumbers xiaobeizhao
	Multiple organism gene finding by collapsed gibbs sampling [My Copy] In RECOMB '04: Proceedings of the eighth annual international conference on Resaerch in computational molecular biology (2004), pp. 187-193. by Sourav Chatterji, Lior Pachter posted to collapsed gibbs sampler by Mehlhorn on 2008-12-08 17:02:45 as
	Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. [My Copy] Science (New York, N.Y.), Vol. 262, No. 5131. (8 October 1993), pp. 208-214. by C. E. Lawrence, S. F. Altschul, M. S. Boguski, J. S. Liu, A. F. Neuwald, J. C. Wootton posted to gibbs sampler by Mehlhorn on 2008-12-08 16:46:03 as along with 10 people isimpson rsaito treangen dquest AaronDarling johncumbers jguinney xili03 seitentaisei wenhan
	A phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site prediction [My Copy] Bioinformatics, Vol. 23, No. 14. (15 July 2007), pp. 1718-1727. by Lee A. Newberg, William A. Thompson, Sean Conlan, Thomas M. Smith, Lee A. McCue, Charles E. Lawrence posted to centroid gibbs sampler by Mehlhorn on 2008-12-08 16:35:01 as along with 7 people and 1 group vingron operon Dulce dpollard cjeans sconlan siebert EisenLab
	PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny. [My Copy] PLoS computational biology, Vol. 1, No. 7. (December 2005) by Rahul Siddharthan, Eric D. Siggia, Erik van Nimwegen posted to gibbs motif phylogeny software by treangen on 2008-11-22 17:25:49 as along with 17 people and 3 groups farhat wowalz aprasad cajunsushi druvus ana postrational dquest AaronDarling nickluscombe noano adsmitty lusk lilou idonaldson yevishere isimpson structural_bioinformatics Bioinformatics EBI-regulation
	A method to reduce the Gibbs ringing artifact in MRI scans while keeping tissue boundary integrity [My Copy] Medical Imaging, IEEE Transactions on In Medical Imaging, IEEE Transactions on, Vol. 21, No. 4. (2002), pp. 305-319. by R. Archibald, A. Gelb posted to gibbs mri reconstruction ringing by stsaft on 2008-11-19 16:35:54 as
	A probabilistic model of local sequence alignment that simplifies statistical significance estimation. [My Copy] PLoS computational biology, Vol. 4, No. 5. (30 May 2008), e1000069. by Sean R. Eddy posted to be for gibbs helpful may read sampling the this through walking by saerni on 2008-11-14 08:15:56 as along with 9 people cmzmasek druvus vwchan treangen BioNica dakelley aramesh2 Ema gdb
	Explaining the Gibbs Sampler [My Copy] The American Statistician, Vol. 46, No. 3. (1992), pp. 167-174. by George Casella, Edward I. George posted to gibbs monte_carlo tutorials by bsilverthorn on 2008-11-13 16:07:51 as along with 17 people gtaralds pool007 Dulce fordela casutton sdvillal AbnerCYH jrnold bayes thijswesterveld fishtank navil seitentaisei adamsi pcarbo vlachmore bhaddow
	GIMSAN: a Gibbs motif finder with significance analysis [My Copy] Bioinformatics, Vol. 24, No. 19. (1 October 2008), pp. 2256-2257. by Patrick Ng, Uri Keich posted to gibbs motifs by nuin on 2008-10-10 20:15:44 as along with 3 people tmarscha idonaldson GeeSharpMinor
	PhyloGibbs-MP: Module Prediction and Discriminative Motif-Finding by Gibbs Sampling [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000156. by Rahul Siddharthan posted to gibbs motifs by nuin on 2008-10-10 20:07:19 as along with 4 people and 1 group lusk malcook sabahkadri emptyhb BenosLab
	Incorporating non-local information into information extraction systems by Gibbs sampling [My Copy] In ACL '05: Proceedings of the 43rd Annual Meeting on Association for Computational Linguistics (2005), pp. 363-370. by Jenny R. Finkel, Trond Grenager, Christopher Manning posted to gibbs machine-learning by markusd on 2008-08-13 21:04:04 as along with 7 people arafalov mehrbod julianpan bhaddow rsantana eegilbert vlachmore
	Retrospective Markov chain Monte Carlo methods for Dirichlet process hierarchical models [My Copy] Biometrika, Vol. 95, No. 1. (6 March 2008), pp. 169-186. by Papaspiliopoulos, Omiros, Roberts, O. Gareth posted to gibbs sampling by vlachmore on 2008-08-11 14:02:52 as
	Global, exact cosmic microwave background data analysis using Gibbs sampling [My Copy] Physical Review D, Vol. 70, No. 8. (18 October 2004), 083511. by Benjamin D. Wandelt, David L. Larson, Arun Lakshminarayanan posted to cmb gibbs by carmenrg on 2008-08-10 21:34:52 as
	Comparison of Thermodynamic Properties of Coarse-Grained and Atomic-Level Simulation Models. [My Copy] Chemphyschem, Vol. 8, No. 3. (8 February 2007), pp. 452-461. by Riccardo Baron, Daniel Trzesniak, Alex H H. de Vries, Andreas Elsener, Siewert J J. Marrink, Wilfred F F. van Gunsteren posted to coarse-grained dynamics entropy field fluid force gibbs gromos helmoltz hydrocarbons method modeling molecular multiscale reorganization solute solvent thermodynamics by rbaron on 2008-08-05 01:55:58 as along with 1 person choonpeng
	Convergence rates of the voting Gibbs classifier, with application to Bayesian feature selection [My Copy] In In 18th International Conference on Machine Learning (2001) by Andrew Y. Ng, Michael I. Jordan posted to convergence gibbs by vlachmore on 2008-08-04 19:16:25 as

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