Tag grn [at least 200 articles] Export

Recent papers classified by the tag grn.

	Evolutionary coupling between the deleteriousness of gene mutations and the amount of non-coding sequences [My Copy] Journal of Theoretical Biology, Vol. 244, No. 4. (21 February 2007), pp. 621-630. by C. Knibbe, O. Mazet, F. Chaudier, J. Fayard, G. Beslon posted to grn evolution deletions alife by mjoach on 2009-11-24 14:38:49 as along with 2 people aprasad timflutre
	A Long-Term Evolutionary Pressure on the Amount of Noncoding DNA [My Copy] Mol Biol Evol, Vol. 24, No. 10. (1 October 2007), pp. 2344-2353. by Carole Knibbe, Antoine Coulon, Olivier Mazet, Jean-Michel Fayard, Guillaume Beslon posted to grn evolution c-value alife by mjoach on 2009-11-24 12:18:04 as along with 6 people and 2 groups operon bpb aprasad pradiptaray cisevol coldmeadow cis-regulatory-evolution BergmanLab
	A Genomic Regulatory Network for Development [My Copy] Science, Vol. 295, No. 5560. (1 March 2002), pp. 1669-1678. by Eric H. Davidson, Jonathan P. Rast, Paola Oliveri, et al.Andrew Ransick, Cristina Calestani, Chiou-Hwa Yuh, Takuya Minokawa, Gabriele Amore, Veronica Hinman, Cesar Arenas-Mena, Ochan Otim, C. Titus Brown, Carolina B. Livi, Pei Y. Lee, Roger Revilla, Alistair G. Rust, Zheng Pan, Maria J. Schilstra, Peter J. C. Clarke, Maria I. Arnone, Lee Rowen, R. Andrew Cameron, David R. McClay, Leroy Hood, Hamid Bolouri posted to grn by antonkratz on 2009-11-23 13:07:52 as along with 11 people and 2 groups emptyhb yyfwuhan dlobo balajis adepace margaritis ccr lusk edvin dquest lukaswindhager GEB EisenLab
	Modeling gene expression with differential equations. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (1999), pp. 29-40. by T. Chen, H. L. He, G. M. Church posted to grn dynamic by nicholasflann on 2009-11-18 14:49:48 as along with 2 people schwartzjmc pmendes
	Reverse engineering gene networks using singular value decomposition and robust regression [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 9. (30 April 2002), pp. 6163-6168. by M. K. Stephen Yeung, Jesper TegnÃ©r, James J. Collins posted to grn dynamic by nicholasflann on 2009-11-18 14:31:02 as along with 8 people and 3 groups fastjoe23 baldazen ggallone rklancer dragonrez rhem1224 rubendrr wnpx TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
	Dynamic Measure of Network Robustness [My Copy] Electrical and Electronics Engineers in Israel, 2006 IEEE 24th Convention of (26 February 2007), pp. 366-370. by Y. Singer posted to grn by kaarsinogen on 2009-11-16 18:28:46 as
	Beyond Centrality - Classifying Topological Significance Using Backup Efficiency and Alternative Paths [My Copy] NETWORKING 2007. Ad Hoc and Sensor Networks, Wireless Networks, Next Generation Internet (2009), pp. 774-785. by Yuval Shavitt, Yaron Singer posted to grn by kaarsinogen on 2009-11-16 18:26:32 as
	Gene regulatory network inference: Data integration in dynamic models—A review [My Copy] Biosystems, Vol. 96, No. 1. (27 April 2009), pp. 86-103. by Michael Hecker, Sandro Lambeck, Susanne Toepfer, Eugene van Someren, Reinhard Guthke posted to simulated optimization neural network metabolism grn by nicholasflann on 2009-11-13 20:17:48 as along with 7 people antonkratz greg guhjy bertelsen mjoach sjung allysonlister
	Inference of Differential Equation Models by Multi Expression Programming for Gene Regulatory Networks [My Copy] Emerging Intelligent Computing Technology and Applications. With Aspects of Artificial Intelligence (2009), pp. 974-983. by Bin Yang, Yuehui Chen, Qingfang Meng posted to metabolism grn by nicholasflann on 2009-11-13 20:06:18 as
	The role of lineage-specific gene family expansion in the evolution of eukaryotes. [My Copy] Genome research, Vol. 12, No. 7. (July 2002), pp. 1048-1059. by Olivier Lespinet, Yuri I. Wolf, Eugene V. Koonin, L. Aravind posted to grn by kaarsinogen on 2009-11-09 22:47:58 as along with 3 people and 1 group thegoose2 tharris ninch C. elegans / WormBase
	Transcription-associated protein families are primarily taxon-specific. [My Copy] Bioinformatics (Oxford, England), Vol. 17, No. 1. (January 2001), pp. 95-97. by R. M. Coulson, A. J. Enright, C. A. Ouzounis posted to grn by kaarsinogen on 2009-11-09 22:46:06 as
	Molecular evolution in the yeast transcriptional regulation network. [My Copy] Journal of experimental zoology. Part B, Molecular and developmental evolution, Vol. 302, No. 4. (15 July 2004), pp. 392-411. by Annette M. Evangelisti, Andreas Wagner posted to grn by kaarsinogen on 2009-11-09 21:38:29 as
	The "robust yet fragile" nature of the Internet. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 41. (11 October 2005), pp. 14497-14502. by John C. Doyle, David L. Alderson, Lun Li, et al.Steven Low, Matthew Roughan, Stanislav Shalunov, Reiko Tanaka, Walter Willinger posted to grn by kaarsinogen on 2009-11-09 21:35:58 as along with 2 people and 1 group yas thehajime T_lab
	Complete genome sequence of the apicomplexan, Cryptosporidium parvum. [My Copy] Science (New York, N.Y.), Vol. 304, No. 5669. (16 April 2004), pp. 441-445. by Mitchell S. Abrahamsen, Thomas J. Templeton, Shinichiro Enomoto, et al.Juan E. Abrahante, Guan Zhu, Cheryl A. Lancto, Mingqi Deng, Chang Liu, Giovanni Widmer, Saul Tzipori, Gregory A. Buck, Ping Xu, Alan T. Bankier, Paul H. Dear, Bernard A. Konfortov, Helen F. Spriggs, Lakshminarayan Iyer, Vivek Anantharaman, L. Aravind, Vivek Kapur posted to grn by kaarsinogen on 2009-11-09 17:56:46 as along with 3 people robfsouza Cortel shung
	The Transcriptome of the Intraerythrocytic Developmental Cycle of Plasmodium falciparum [My Copy] PLoS Biol, Vol. 1, No. 1. (18 August 2003), e5. by Zbynek Bozdech, Manuel Llinás, Brian L. Pulliam, Edith D. Wong, Jingchun Zhu, Joseph L. DeRisi posted to grn by kaarsinogen on 2009-11-09 17:54:43 as along with 5 people chica shung dyermd Sharpshoot shuzhens
	Comparing different ODE modelling approaches for gene regulatory networks [My Copy] Journal of Theoretical Biology, Vol. 261, No. 4. (21 December 2009), pp. 511-530. by A. Polynikis, S. J. Hogan, M. di Bernardo posted to review journal grnmodel grn genetic_regulatory_networks gene_regulatory_networks by joseph_x_zhou on 2009-11-09 14:32:54 as along with 1 person agonzale
	Reverse engineering of gene regulatory networks: a finite state linear model [My Copy] Genome Biology, Vol. 4, No. 6. (2003), P5. by Alvis Brazma, Thomas Schlitt posted to grn by antonkratz on 2009-10-26 06:17:58 as
	Canalization, genetic assimilation and preadaptation. A quantitative genetic model. [My Copy] Genetics, Vol. 149, No. 4. (August 1998), pp. 2119-2133. by I. Eshel, C. Matessi posted to grn by antonkratz on 2009-10-26 06:10:48 as along with 2 people and 1 group rklancer cursonivel1 cursonivel1
	The Evolution of Canalization and the Breaking of Von Baer's Laws: Modeling the Evolution of Development with Epistasis [My Copy] Evolution, Vol. 52, No. 3. (1998), pp. 647-656. by Sean H. Rice posted to grn by antonkratz on 2009-10-26 06:10:05 as along with 3 people wilbur jjray shivakumar3_14
	Plasticity, evolvability, and modularity in RNA. [My Copy] J Exp Zool, Vol. 288, No. 3. (15 October 2000), pp. 242-283. by L. W. Ancel, W. Fontana posted to grn by antonkratz on 2009-10-26 06:09:50 as along with 2 people evaf amorgan
	A Population Genetic Theory of Canalization [My Copy] Evolution, Vol. 51, No. 2. (1997), pp. 329-347. by Gunter P. Wagner, Ginger Booth, Homayoun B. Chaichian posted to grn by antonkratz on 2009-10-26 06:09:31 as along with 1 person jjray
	Does Evolutionary Plasticity Evolve? [My Copy] Evolution, Vol. 50, No. 3. (1996), pp. 1008-1023. by Andreas Wagner posted to grn_topology grn by antonkratz on 2009-10-26 06:07:45 as
	A Quantitative-Genetic Model for Selection on Developmental Noise [My Copy] Evolution, Vol. 48, No. 5. (1994), pp. 1478-1486. by Sergey Gavrilets, Alan Hastings posted to grn by antonkratz on 2009-10-26 06:07:06 as
	Evolutionary capacitance as a general feature of complex gene networks. [My Copy] Nature, Vol. 424, No. 6948. (31 July 2003), pp. 549-552. by Aviv Bergman, Mark L. Siegal posted to grn by antonkratz on 2009-10-26 06:04:29 as along with 8 people dbikard tictacgo semrich emptyhb hisashim cambray rklancer pat
	Waddington's canalization revisited: developmental stability and evolution. [My Copy] Proceedings of the National Academy of Sciences of the United States of America. , Vol. 99, No. 16. (6 August 2002), pp. 10528-10532. by Mark L. Siegal, Aviv Bergman posted to grn by antonkratz on 2009-10-26 06:04:09 as along with 3 people jjray emptyhb balicea
	Network topology and the evolution of dynamics in an artificial genetic regulatory network model created by whole genome duplication and divergence. [My Copy] Bio Systems, Vol. 85, No. 3. (September 2006), pp. 177-200. by P. Dwight Kuo, W. Banzhaf, A. Leier posted to topology properties grn evolution analysis alife by mjoach on 2009-10-23 12:07:30 as along with 4 people and 1 group rebeccamancy dlobo adamnellis madhadron GEB
	Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 50. (12 December 2006), pp. 19033-19038. by Timothy R. Lezon, Jayanth R. Banavar, Marek Cieplak, Amos Maritan, Nina V. Fedoroff posted to grn analysis by mjoach on 2009-10-13 13:01:34 as along with 8 people TRHvidsten tmmurali yaredo jfr aswin hmk iris_2001 macavity1g
	Developing and Testing Methods for Microarray Data Analysis Using an Artificial Life Framework [My Copy] Advances in Artificial Life (2003), pp. 686-695. by Dirk Repsilber, Jan T. Kim posted to simulation microarray grn alife by mjoach on 2009-10-13 12:27:35 as
	Network motifs: theory and experimental approaches [My Copy] Nature Reviews Genetics, Vol. 8, No. 6. (01 June 2007), pp. 450-461. by Uri Alon posted to motfis grn by mjoach on 2009-10-13 12:21:31 as along with 33 people and 4 groups yoshiness Katieleonard nurban vtraag mlee1 myzhang hkuhn mtagaya cambray dswan renatomilani heliopais snow_dragon druvus pengchy cswinburne dlobo kentz icases aalibes cmmorel jtaylor dbikard margaritis shigepong zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba Borelli GEB TNT Centre de Recherches Interdisciplinaires SynBioSys
	Gene regulatory networks and the evolution of animal body plans. [My Copy] Science, Vol. 311, No. 5762. (10 February 2006), pp. 796-800. by E. H. Davidson, D. H. Erwin posted to grn evolution body-plan by mjoach on 2009-10-13 12:21:14 as along with 20 people and 5 groups dlobo anphony qwermish sWorgan Lauren_Jones eldan bayesian dpollard xico dchughes brixtonmc Liusha margaritis josepe cjeans sujaikumar Garamonfok jtomasch Ema natstreet GEB EisenLab WetBiology G4ID Genetics-of-Gambling
	Shadow Enhancers as a Source of Evolutionary Novelty [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), 1314. by Joung-Woo Hong, David A. Hendrix, Michael S. Levine posted to novelty grn evolution by mjoach on 2009-10-13 12:21:03 as along with 16 people and 4 groups daveGerrard cisevol jfr rouault emptyhb dlobo sebastien_vigneau Stew bpcusack Ema Zephyrus djkt natstreet isimpson maximilianh caseybrown BergmanLab TranscriptionalRegulationWithThermodynamicModels GEB Roswell Cancer Crosstalk
	Modeling and Simulation of Genetic Regulatory Systems: A Literature Review [My Copy] Journal of Computational Biology, Vol. 9, No. 1. (January 2002), pp. 67-103. by Hidde de Jong posted to modelling grn by mjoach on 2009-10-13 12:20:53 as along with 27 people and 6 groups Borelli qluo antonkratz reyez tlse65 wangbo dlobo jago behindtherabbit cswinburne ggallone softsimu eldan tmmurali bayesian balicea Happybene wnpx kengg noano sstoma josepe dagmar jo_davies roys maburkitt phoenixzxl smac GEB Jarman Lab VirtualPlants Plantandetc compneur
	Network Motifs: Simple Building Blocks of Complex Networks [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 824-827. by R. Milo, S. Shen-Orr, S. Itzkovitz, N. Kashtan, D. Chklovskii, U. Alon posted to motfis grn analysis by mjoach on 2009-10-13 12:20:45 as along with 72 people and 10 groups antonkratz jaspervoskuilen Sergey_gerbek nurban balabu ocs makrehchi schwartzjmc poirel tomhebbron arsyed vtraag sergiun fierykylin Akimasa operon dlobo daforerog chasmand wei_tang darian orahcio babakap brewbooks phoenixzxl Md_2007 mtagaya heliopais kaarsinogen galyardt cswinburne mullonc camster korakot aalibes ChaTo imouthesmp Borelli lfriedl alexg balicea tny ssb wnpx ddahlem cmm donade neveaire griota gurkanbebek jtaylor josepe iris_2001 michaelmampaey rebeccamancy karfunkel lenov Evangelia roys tfogal zibuyu maralena stefanoallesina pbull cmor renatomilani shikin carlk applesnow subhacom i-stevenson ethkim complex networks GEB Philosophy_of_Information dbk-lab Blog_and_Wiki_Research kdl FAB-lab ColDyn ADMiRes GeneGo
	A Computational Morphogenesis Approach to Simple Structure Development [My Copy] Advances in Artificial Life (2007), pp. 825-834. by Enrique Fernández-Blanco, Julián Dorado, Juan Rabuñal, Marcos Gestal, And Pedreira posted to grn grid embryogeny alife by mjoach on 2009-10-06 15:42:11 as along with 1 person and 1 group dlobo GEB
	Intervention in a family of Boolean networks [My Copy] Bioinformatics, Vol. 22, No. 2. (12 November 2005), pp. bti765-232. by Ashish Choudhary, Aniruddha Datta, Michael L. Bittner, Edward R. Dougherty posted to grn by nicholasflann on 2009-10-05 18:53:13 as along with 1 person kinop
	Reconstructing dynamic regulatory maps [My Copy] Molecular Systems Biology, Vol. 3 (16 January 2007) by Jason Ernst, Oded Vainas, Christopher T. Harbison, Itamar Simon, Ziv Bar-Joseph posted to review grn_inference grn by antonkratz on 2009-10-05 15:29:13 as along with 11 people and 1 group beete tienholin roys behindtherabbit okarsligil aswin mikaelhuss SeungjoonOh berthoums natstreet jo_davies Bioinformatics
	Towards the integrated analysis, visualization and reconstruction of microbial gene regulatory networks [My Copy] Brief Bioinform, Vol. 10, No. 1. (1 January 2009), pp. 75-83. by Jan Baumbach, Andreas Tauch, Sven Rahmann posted to review grn_inference grn by antonkratz on 2009-10-05 15:27:33 as along with 2 people druvus dullhunk
	Modelling and analysis of gene regulatory networks [My Copy] Nat Rev Mol Cell Biol, Vol. 9, No. 10. (October 2008), pp. 770-780. by Guy Karlebach, Ron Shamir posted to review grn_model grn_inference grn by antonkratz on 2009-10-05 15:25:55 as along with 14 people agonzale cannin tklee aviad_work kaarsinogen thomaskelder fgibson druvus balicea brianb nedwards dakelley guhjy tmmurali
	Inferring cellular networks - a review [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 6. (2007), S5. by Florian Markowetz, Rainer Spang posted to review grn_inference grn by antonkratz on 2009-10-05 15:24:08 as along with 15 people jaspervoskuilen daforerog chica ocs roys cswinburne ndiaz edwardmorrissey guhjy tmmurali shigepong dejori heliopais bertelsen czeller
	Inferring Cellular Networks Using Probabilistic Graphical Models [My Copy] Science, Vol. 303, No. 5659. (6 February 2004), pp. 799-805. by Nir Friedman posted to review grn_inference grn by antonkratz on 2009-10-05 15:21:52 as along with 24 people and 2 groups jxl phoenixzxl abhishek_tiwari richardbickerton ruichu ggallone bertelsen ldfu ujh lfriedl opheliav ryang wnpx nirfriedman neveaire koller helsley dimatura edwardmorrissey vietanh0 Yumyai srp33 saman_vp jo_davies Jarman Lab kdl
	Towards knowledge-based gene expression data mining [My Copy] Journal of Biomedical Informatics, Vol. 40, No. 6. (December 2007), pp. 787-802. by Riccardo Bellazzi, Blaž Zupan posted to review grn_inference grn by antonkratz on 2009-10-05 15:20:33 as along with 4 people and 1 group eesruiz bfish guhjy isimpson ImagCom - Biomedical Text Computing
	How to infer gene networks from expression profiles [My Copy] Molecular Systems Biology, Vol. 3 (13 February 2007) by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo posted to review grn_inference grn by antonkratz on 2009-10-05 15:18:34 as along with 38 people and 3 groups Jporci beete tonamswish zufar nicholasflann icq242500260 guhjy Zephyrus phoenixzxl bertelsen isimpson daforerog poirel agonzale roys Neeperando APRegier rdiaz klo Borelli ggallone ptrobajo druvus cswinburne jfr eckart_bindewald wnpx nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
	Computational methodologies for modelling, analysis and simulation of signalling networks [My Copy] Brief Bioinform, Vol. 7, No. 4. (1 December 2006), pp. 339-353. by David Gilbert, Hendrik Fuss, Xu Gu, et al.Richard Orton, Steve Robinson, Vladislav Vyshemirsky, Mary J. Kurth, C. Stephen Downes, Werner Dubitzky posted to review grn_inference grn by antonkratz on 2009-10-05 15:16:35 as along with 6 people laurabertens behindtherabbit dgroth aswin seahawk27 lukaswindhager
	Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network. [My Copy] BMC systems biology, Vol. 3, No. 1. (2009), 83. by Clemens Kühn, Christoph Wierling, Alexander Kühn, et al.Edda Klipp, Georgia Panopoulou, Hans Lehrach, Albert J. Poustka posted to grn analysis by mjoach on 2009-10-02 18:17:56 as along with 3 people reyez agonzale abhishek_tiwari
	Shape homeostasis in virtual embryos [My Copy] Artif. Life, Vol. 15, No. 2. (14 January 2009), pp. 161-183. by Tim Andersen, Richard Newman, Tim Otter posted to grn embryogenesis development alife by mjoach on 2009-09-29 11:03:18 as along with 1 person and 1 group dlobo GEB
	Current approaches to gene regulatory network modelling [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 6. (2007), S9. by Thomas Schlitt, Alvis Brazma posted to thesis review grn_model grn by antonkratz on 2009-09-23 03:59:42 as along with 7 people Borelli aviad_work kengg shigepong ramakris nicholasflann bertelsen
	Inferring gene regulatory networks from multiple microarray datasets [My Copy] Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2413-2420. by Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen posted to grn_inference grn by antonkratz on 2009-09-23 03:58:01 as along with 5 people roys frohike jhatrimatri natstreet heliopais
	Reverse-engineering transcription control networks [My Copy] Physics of Life Reviews, Vol. 2, No. 1. (March 2005), pp. 65-88. by T. Gardner, J. Faith posted to grn by antonkratz on 2009-09-23 03:45:20 as along with 3 people rklancer tmmurali heliopais
	Deep homology and the origins of evolutionary novelty. [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 818-823. by Neil Shubin, Cliff Tabin, Sean Carroll posted to transcription-regulation review grn evolution evodevo by isimpson to the group Jarman Lab on 2009-09-17 13:34:09 as along with 5 people nhp provero tomhebbron ramiro2k jjray
	Gene regulatory networks for development. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 14. (5 April 2005), pp. 4936-4942. by Michael Levine, Eric H. Davidson posted to grn development biology by dlobo to the group GEB on 2009-09-03 11:24:36 as along with 5 people and 1 group daveGerrard Happybene Liusha margaritis jtomasch BergmanLab

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evolution	76
alife	49
gene-networks	32
gene-regulation	31
review	30
development	26
modeling	22
network_inference	20
network	18
biology	17
journal	17
gene	16
networks	16
model	15
regulatory	15
attractors	13
gene_regulation_network	12
systems-biology	12
analysis	11
embryogenesis	11
grn_inference	11
regulation	11
evo-devo	10
paidi	10
reconstruction	10
gene_switch	9
boolean	8
french-flag	8
grammars	8
ma	8
modularity	8
boolnet	7
indirect	7
modelling	7
robustness	7
bacteria	6
cis-regulation	6
evolution-of-shape	6
promoter	6
synthetic	6
yeast	6
differentiation	5
dynamics	5
evolvability	5
gene_regulation	5
genome	5
journal-monitoring	5
properties	5
ann	4
complexity	4
counters	4
density	4
epistasis	4
gene-regulatory-network	4
graph	4
microarray	4
morphogenesis	4
motfis	4
noise	4
robusness	4
software	4
algorithms	3
amorph	3
artificial	3
book	3
embryogeny	3
gene_networks	3
grn_model	3
inference	3
metabolism	3
operons	3
stem-cell	3
tf	3
transcription-regulation	3
transcription_factor	3
biological	2
c-value	2
cancer	2
cell_diff	2
cell_fate	2
dbn	2
degree	2
distance	2
dynamic	2
expression	2
folding	2
gene_expression	2
grid	2
kauffman	2
math	2
novelty	2
ontogenetic	2
regulatory_network	2
rna	2
selfish	2
sex	2
steady-state	2
theo-bio	2
theory	2
trans-regulation	2

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