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Tag hapmap [79 articles]

Recent papers classified by the tag hapmap.
  • Common genetic variants account for differences in gene expression among ethnic groups.
    Nat Genet (7 January 2007)
    by Richard S S Spielman, Laurel A A Bastone, Joshua T T Burdick, Michael Morley, Warren J J Ewens, Vivian G G Cheung
    posted to decode hapmap by xingxu on 2007-08-17 16:46:27 as ***** along with 6 people and 4 groups aprasad balicea dchughes adepace vplagnol mgaldzic EisenLab G4ID CHIP Genetics-of-Gambling
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
    posted to cnv genomics hapmap by xingxu on 2007-08-01 21:25:01 as read along with 28 people and 7 groups waszak jo_davies psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
  • A second generation human haplotype map of over 3.1 million SNPs
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 851-861.
    posted to hapmap methods by xingxu on 2008-04-03 11:57:21 as ** along with 11 people and 2 groups gowtham psique jyuh dchughes djkt frohike lp2 ryanraaum jasonflannick skumagai mfm11 Bioinformatics parkinson's disease references
  • Heritability of alternative splicing in the human genome
    Genome Res., Vol. 17, No. 8. (1 August 2007), pp. 1210-1218.
    by Tony Kwan, David Benovoy, Christel Dias, Scott Gurd, David Serre, Harry Zuzan, Tyson A Clark, Anthony Schweitzer, Michelle K Staples, Hui Wang, John E Blume, Thomas J Hudson, Rob Sladek, Jacek Majewski
    posted to hapmap splicing by xingxu on 2007-08-07 16:37:25 as ** along with 8 people and 3 groups dchughes msomel caseybrown nicholso jo_davies ramensky popgen jyuh Bioinformatics G4ID Genetics-of-Gambling
  • Integrated detection and population-genetic analysis of SNPs and copy number variation.
    Nature genetics (7 September 2008)
    by Steven A A McCarroll, Finny G G Kuruvilla, Joshua M M Korn, Simon Cawley, James Nemesh, Alec Wysoker, Michael H H Shapero, Paul I W I de Bakker, Julian B B Maller, Andrew Kirby, Amanda L L Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J J Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W W Jones, Rich Rava, Mark J J Daly, Stacey B B Gabriel, David Altshuler
    posted to snp hapmap genetics cnv affymetrix by waszak on 2008-10-08 15:11:10 as ** along with 11 people and 1 group caseybrown rsantana Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz jyuh Roswell Cancer Crosstalk
  • Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome.
    Am J Hum Genet, Vol. 79, No. 2. (August 2006), pp. 275-290.
    by DP Locke, AJ Sharp, SA McCarroll, SD McGrath, TL Newman, Z Cheng, S Schwartz, DG Albertson, D Pinkel, DM Altshuler, EE Eichler
    posted to snp ld human hapmap genome cnv cnp by waszak on 2008-10-08 14:36:13 as ** along with 1 person lp2
  • Hidden copy number variation in the HapMap population.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 29. (22 July 2008), pp. 10067-10072.
    by JC Marioni, M White, S Tavaré, AG Lynch
    posted to cnv hapmap by waszak on 2008-07-24 10:09:47 as ** along with 2 people jyuh Stew
  • A high-resolution survey of deletion polymorphism in the human genome
    Nature Genetics, Vol. 38, No. 1. (04 December 2005), pp. 75-81.
    by Donald F Conrad, Daniel T Andrews, Nigel P Carter, Matthew E Hurles, Jonathan K Pritchard
    posted to snp ld human hapmap genome cnp by waszak on 2008-10-08 14:37:51 as ** along with 5 people and 1 group bpb balajis ashandanj djkt vplagnol Bioinformatics
  • Efficiency and power in genetic association studies
    Nature Genetics, Vol. 37, No. 11. (23 October 2005), pp. 1217-1223.
    by Paul IW de Bakker, Roman Yelensky, Itsik Pe'er, Stacey B Gabriel, Mark J Daly, David Altshuler
    posted to hapmap popgen by tiago on 2006-04-15 00:43:05 as **** along with 8 people and 2 groups pcahan1 ashandanj giovanni debasis parkcc mailund jyuh Ayest Bioinformatics GeschwindLab
  • A haplotype map of the human genome
    Nature, Vol. 437, No. 7063., pp. 1299-1320.
    by The
    posted to hapmap popgen by tiago on 2006-04-15 00:43:56 as **** along with 14 people and 1 group balajis cfleet dlr pachowwhite balicea ashandanj mbeautru eukfn joepickrell cat_worth hms adijr mailund wenhui structural_bioinformatics
  • A Map of Recent Positive Selection in the Human Genome.
    PLoS Biol, Vol. 4, No. 3. (7 March 2006)
    by Benjamin F F Voight, Sridhar Kudaravalli, Xiaoquan Wen, Jonathan K K Pritchard
    posted to hapmap popgen selection by tiago on 2006-04-15 01:07:19 as **** along with 20 people and 7 groups stevanspringer kentsis bpb balajis indigoviolet ejeffery pradiptaray madhadron breden larios ashandanj hdopazo livingthingdan djkt mbeautru grahamc suizan shoshin iris42 dmc Bioinformatics EisenLab FAB-lab SFUAntibodyResearch BioinfoCIPF livingthing Durbin group
  • An utter refutation of the 'Fundamental Theorem of the HapMap'
    Eur J Hum Genet (15 February 2006)
    by Joseph D D Terwilliger, Tero Hiekkalinna
    posted to haplotypes hapmap by sometwo on 2006-02-20 10:37:08 as ** along with 6 people Terkko balajis santi mbeautru jermth ryanraaum
  • Effective selection of informative SNPs and classification on the HapMap genotype data
    BMC Bioinformatics, Vol. 8 (20 December 2007), 484.
    by Nina Zhou, Lipo Wang
    posted to hapmap marker-selection snp to-update by ryanraaum on 2008-01-10 17:11:50 as ** along with 1 person srp33
  • Genome-wide detection and characterization of positive selection in human populations
    Nature, Vol. 449, No. 7164. (18 October 2007), pp. 913-918.
    by Pardis C Sabeti, Patrick Varilly, Ben Fry, Jason Lohmueller, Elizabeth Hostetter, Chris Cotsapas, Xiaohui Xie, Elizabeth H Byrne, Steven A Mccarroll, Rachelle Gaudet, Stephen F Schaffner, Eric S Lander
    posted to allele-frequency-spectrum hapmap natural-selection by ryanraaum on 2007-10-17 20:28:06 as ** along with 7 people brian dchughes djkt ramensky hms iris42 jasonflannick
  • A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
    Nature Genetics, Vol. 38, No. 11. (22 October 2006), pp. 1251-1260.
    by Donald F Conrad, Mattias Jakobsson, Graham Coop, Xiaoquan Wen, Jeffrey D Wall, Noah A Rosenberg, Jonathan K Pritchard
    posted to ceph-panel hapmap ld by ryanraaum on 2007-08-16 16:41:31 as ** along with 3 people vplagnol ramensky jasonbobe
  • Human population structure detection via multilocus genotype clustering
    BMC Genetics, Vol. 8 (25 June 2007), 34.
    by Xiaoyi Gao, Joshua Starmer
    posted to clustering hapmap methods population-structure snp statistics structure by ryanraaum on 2007-08-10 15:05:26 as **
  • Global landscape of recent inferred Darwinian selection for Homo sapiens
    PNAS, Vol. 103, No. 1. (3 January 2006), pp. 135-140.
    by Eric T Wang, Greg Kodama, Pierre Baldi, Robert K Moyzis
    posted to hapmap selective-sweep by ryanraaum on 2007-11-09 21:17:42 as ** along with 10 people and 3 groups cgreal balajis balicea ejeffery dchughes madhadron larios JBEgwa01 shoshin qwermish CGREL G4ID Genetics-of-Gambling
  • PCA-Correlated SNPs for Structure Identification in Worldwide Human Populations
    PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e160.
    by Peristera Paschou, Elad Ziv, Esteban G Burchard, Shweta Choudhry, William Rodriguez-Cintron, Michael W Mahoney, Petros Drineas
    posted to admixture hapmap ld methods pca snp structure by ryanraaum on 2007-09-21 13:55:54 as ** along with 2 people dalexander caseybrown
  • Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans
    Nat Genet, Vol. 39, No. 10. (October 2007), pp. 1251-1255.
    by Alon Keinan, James C Mullikin, Nick Patterson, David Reich
    posted to allele-frequency-spectrum asia bottleneck europe hapmap out-of-africa snp by ryanraaum on 2007-09-27 13:18:14 as ** along with 3 people and 1 group dchughes lh3 dmc Durbin group
  • The road to genome-wide association studies.
    Nat Rev Genet (19 February 2008)
    by Leonid Kruglyak
    posted to association genome-wide hapmap review studies by ptrobajo on 2008-04-05 22:22:30 as ** along with 6 people dipenps druvus jyuh zwang mingzhi marpin
  • A haplotype map of the human genome.
    Nature, Vol. 437, No. 7063. (27 October 2005), pp. 1299-1320.
    by D Altshuler, LD Brooks, A Chakravarti, FS Collins, MJ Daly, P Donnelly,
    posted to hapmap by psique on 2008-09-24 14:23:02 as ***** along with 12 people and 2 groups eoghanharr Cortel textoris pcahan1 cgasa tabu adepace djkt vplagnol ramensky jjannink jermth EisenLab PROPOSED_CGASA
  • Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes
    Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853.
    by Barbara E Stranger, Matthew S Forrest, Mark Dunning, Catherine E Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E Hurles, Emmanouil T Dermitzakis
    posted to snp hapmap genomics gene_expression cnv by psique on 2008-09-23 16:17:37 as read along with 19 people and 3 groups waszak daed jo_davies srp33 jyuh jfr dpollard balicea rdiaz qfwills djkt vplagnol shigepong jlangdon xingxu cisevol caseybrown frohike jandot Bioinformatics EisenLab cis-regulatory-evolution
  • Integrating ethics and science in the International HapMap Project.
    Nat Rev Genet, Vol. 5, No. 6. (June 2004), pp. 467-475.
    by
    posted to elsi hapmap research-ethics by PredictER on 2008-03-11 19:37:15 as ** along with 2 people and 1 group ladygoat evoltropia CGREL
  • HapMap-based study of the 17q21 ERBB2 amplicon in susceptibility to breast cancer
    British Journal of Cancer, Vol. aop, No. current. (21 November 2006)
    by PR Benusiglio, PD Pharoah, PL Smith, F Lesueur, D Conroy, RN Luben, G Dew, C Jordan, A Dunning, DF Easton, BAJ Ponder
    posted to breast_cancer epidemiology erbb2 genetic_epidemiology hapmap snp by pbenusiglio on 2007-10-19 09:10:21 as read
  • Genetic variation in human gene expression.
    Mamm Genome (12 June 2006)
    by Emmanouil T Dermitzakis, Barbara E Stranger
    posted to expression genotype hapmap snps by noano on 2006-06-29 09:25:22 as **** along with 4 people and 2 groups psique dpollard cmm djkt EisenLab FAB-lab
  • Genome-wide associations of gene expression variation in humans.
    PLoS Genet, Vol. 1, No. 6. (December 2005)
    by BE Stranger, MS Forrest, AG Clark, MJ Minichiello, S Deutsch, R Lyle, S Hunt, B Kahl, SE Antonarakis, S Tavaré, P Deloukas, ET Dermitzakis
    posted to expression genotype hapmap snps by noano on 2006-06-29 09:24:05 as read along with 8 people and 3 groups psique adepace rdiaz qfwills ashandanj jo_davies cisevol shikin Bioinformatics EisenLab cis-regulatory-evolution
  • The International HapMap Project
    Nature, Vol. 426, No. 6968. (18 December 2003), pp. 789-796.
    posted to hapmap by mbeautru on 2006-08-10 22:47:22 as read along with 4 people and 1 group adijr tiago jandot shikin Bioinformatics
  • Fine Mapping of Disease Genes Using Tagging SNPs
    Annals of Human Genetics, Vol. 71, No. 6. (November 2007), pp. 815-827.
    by Sjolander, Arvid, Hossjer, Ola, Hartman, Linda Werner, Humphreys, Keith
    posted to hapmap tag-snp by jyuh on 2008-03-19 09:22:16 as **
  • HapMap coverage for SNPs in the Japanese population.
    Journal of human genetics, Vol. 53, No. 1. (2008), pp. 96-99.
    by F Takeuchi, M Serizawa, N Kato
    posted to hapmap japan by jyuh on 2008-07-31 05:51:45 as **
  • An evaluation of the performance of HapMap SNP data in a Shanghai Chinese population: analyses of allele frequency, linkage disequilibrium pattern and tagging SNPs transferability on chromosome 1q21-q25
    BMC Genetics, Vol. 9 (27 February 2008), 19.
    by Cheng Hu, Weiping Jia, Weihua Zhang, Congrong Wang, Rong Zhang, Jie Wang, Xiaojing Ma, International, Kunsan Xiang
    posted to hapmap china by jyuh on 2008-07-10 11:14:55 as **
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
    Nature, Vol. 447, No. 7146. (14 June 2007), pp. 799-816.
    by
    posted to hapmap encode by jyuh on 2008-03-01 15:54:46 as ** along with 11 people and 2 groups waszak jfr chad_davis kengg olympos blobbybirdman shikin fpattyn yevishere elfar eskay Bioinformatics UH - Computational Biology
  • EBV Immortalization of human B lymphocytes separated from small volumes of cryo-preserved whole blood.
    International journal of epidemiology, Vol. 37 Suppl 1 (April 2008)
    by MM Amoli, D Carthy, H Platt, WE Ollier
    posted to pbmc hapmap ebv biobank by jyuh on 2008-08-20 15:04:30 as **
  • Genome-wide survey of allele-specific splicing in humans
    BMC Genomics, Vol. 9 (02 June 2008), 265.
    by Victoria Nembaware, Bukiwe Lupindo, Katherine Schouest, Charles Spillane, Konrad Scheffler, Cathal Seoighe
    posted to hapmap pmc splicing by jyuh on 2008-08-31 05:36:18 as ** along with 1 person ramensky
  • A case study of the utility of the HapMap database for pharmacogenomic haplotype analysis in the Taiwanese population.
    Molecular diagnosis & therapy, Vol. 10, No. 6. (2006), pp. 367-370.
    by E Lin, Y Hwang, CM Tzeng
    posted to taiwan hapmap by jyuh on 2008-09-12 05:57:53 as **
  • Genome-wide analysis of transcript isoform variation in humans.
    Nat Genet (13 January 2008)
    by Tony Kwan, David Benovoy, Christel Dias, Scott Gurd, Cathy Provencher, Patrick Beaulieu, Thomas J J Hudson, Rob Sladek, Jacek Majewski
    posted to hapmap snp splicing by jyuh on 2008-08-19 09:52:24 as ** along with 7 people GeeSharpMinor nicholso jo_davies caseybrown stoffreg meiklej vplagnol
  • Estimating coverage and power for genetic association studies using near-complete variation data
    Nat Genet, Vol. 40, No. 7. (July 2008), pp. 841-843.
    by Tushar R Bhangale, Mark J Rieder, Deborah A Nickerson
    posted to association gwa hapmap power by jyuh on 2008-07-02 07:25:27 as ** along with 2 people caseybrown djkt
  • Natural variation in human gene expression assessed in lymphoblastoid cells.
    Nat Genet, Vol. 33, No. 3. (March 2003), pp. 422-425.
    by VG Cheung, LK Conlin, TM Weber, M Arcaro, KY Jen, M Morley, RS Spielman
    posted to hapmap snp by jyuh on 2008-08-17 05:18:24 as ** along with 2 people snuppepuppan jo_davies
  • MutaGeneSys: estimating individual disease susceptibility based on genome-wide SNP array data.
    Bioinformatics, Vol. 24, No. 3. (1 February 2008), pp. 440-442.
    by J Stoyanovich, I Pe'er
    posted to software microarray hapmap gwa by jyuh on 2008-03-16 02:56:15 as ** along with 1 person srp33
  • Empirical assessment of the validity of the ‘fundamental theorem of the HapMap’ in the light of ‘cryptic’ tagging of multiple susceptibility loci
    European Journal of Human Genetics, Vol. aop, No. current.
    by Zoltán Bochdanovits, Peter Heutink, Aad van der Vaart
    posted to hapmap by jyuh on 2008-03-29 03:53:01 as **
  • On the challenges of the HapMap resource.
    Bioinformation, Vol. 2, No. 6. (2008), pp. 238-239.
    by W Zhang, ME Dolan
    posted to hapmap pbmc by jyuh on 2008-03-28 03:40:59 as **
  • Characterization of LD structures and the utility of HapMap in genetic association studies.
    Advances in genetics, Vol. 60 (2008), pp. 407-435.
    by CC Gu, K Yu, DC Rao
    posted to hapmap by jyuh on 2008-07-10 10:53:20 as **
  • Generating samples for association studies based on HapMap data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Jing Li, Yixuan Chen
    posted to hapmap simulation software by jyuh on 2008-02-29 15:47:49 as ** along with 1 person vinithepooh
  • Identification of genetic variants contributing to cisplatin-induced cytotoxicity by use of a genomewide approach.
    Am J Hum Genet, Vol. 81, No. 3. (September 2007), pp. 427-437.
    by RS Huang, S Duan, SJ Shukla, EO Kistner, TA Clark, TX Chen, AC Schweitzer, JE Blume, ME Dolan
    posted to hapmap pbmc by jyuh on 2008-08-31 07:44:49 as ** along with 2 people nicholso caseybrown
  • HapMap tagSNP transferability in multiple populations: general guidelines.
    Genomics, Vol. 92, No. 1. (July 2008), pp. 41-51.
    by J Xing, DJ Witherspoon, WS Watkins, Y Zhang, W Tolpinrud, LB Jorde
    posted to hapmap tag-snp by jyuh on 2008-07-10 11:17:26 as **
  • The application of the HapMap to diabetic nephropathy and other causes of chronic renal failure.
    Semin Nephrol, Vol. 27, No. 2. (March 2007), pp. 223-236.
    by SK Iyengar, SG Adler
    posted to ckd dn hapmap by jyuh on 2007-06-13 11:12:33 as **
  • HapMap filter 1.0: A tool to preprocess the HapMap genotypic data for association studies.
    Bioinformation, Vol. 2, No. 8. (2008), pp. 322-324.
    by W Zhang, S Duan, ME Dolan
    posted to hapmap pbmc software by jyuh on 2008-08-16 08:16:31 as **
  • Using HapMap Tools in Pharmacogenomic Discovery: The Thiopurine Methyltransferase Polymorphism
    Clin Pharmacol Ther, Vol. 81, No. 5. (28 February 2007), pp. 729-734.
    by TS Jones, W Yang, WE Evans, MV Relling
    posted to hapmap pharmacogenetics by jyuh on 2008-08-20 14:15:55 as ** along with 1 person ansu
  • Quantification and correction of bias in tagging SNPs caused by insufficient sample size and marker density by means of haplotype-dropping.
    Genetic epidemiology, Vol. 32, No. 1. (January 2008), pp. 20-28.
    by MM Iles
    posted to hapmap by jyuh on 2008-07-10 11:14:19 as **
  • The Population Reference Sample, POPRES: A Resource for Population, Disease, and Pharmacological Genetics Research.
    American journal of human genetics (27 August 2008)
    by Matthew R R Nelson, Katarzyna Bryc, Karen S S King, Amit Indap, Adam R R Boyko, John Novembre, Linda P P Briley, Yuka Maruyama, Dawn M M Waterworth, Gérard Waeber, Peter Vollenweider, Jorge R R Oksenberg, Stephen L L Hauser, Heide A A Stirnadel, Jaspal S S Kooner, John C C Chambers, Brendan Jones, Vincent Mooser, Carlos D D Bustamante, Allen D D Roses, Daniel K K Burns, Margaret G G Ehm, Eric H H Lai
    posted to taiwan hapmap gwa case-control by jyuh on 2008-09-11 17:07:44 as ** along with 1 person daforerog
  • A HapMap harvest of insights into the genetics of common disease.
    The Journal of clinical investigation, Vol. 118, No. 5. (May 2008), pp. 1590-1605.
    by TA Manolio, LD Brooks, FS Collins
    posted to hapmap by jyuh on 2008-05-17 04:45:34 as **
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