Tag helix [151 articles] Export

Recent papers classified by the tag helix.

	Amino Acid Propensities are Position-dependent Throughout the Length of α-Helices☆ [My Copy] Journal of Molecular Biology, Vol. 337, No. 5. (09 April 2004), pp. 1195-1205. by Donald E. Engel, William F. DeGrado posted to structure secondary propensity mrna helix amino alpha acid by saunders on 2009-11-26 15:21:23 as
	SDS Micelles as a Membrane-Mimetic Environment for Transmembrane Segments [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by David V. Tulumello, Charles M. Deber posted to tulum09pdf sds mimetic micelle membrane helix environment alpha by paulschlesinger on 2009-11-26 00:00:34 as
	Backbone Dynamics of the Monomeric λ Repressor Denatured State Ensemble under Nondenaturing Conditions† [My Copy] Biochemistry, Vol. 46, No. 5. (1 February 2007), pp. 1141-1151. by Preeti Chugha, Terrence G. Oas posted to structure nmr native n-terminal methionine helix by saunders on 2009-11-17 10:17:28 as
	Estimation of the pore size of the large-conductance mechanosensitive ion channel of Escherichia coli. [My Copy] Biophysical journal, Vol. 73, No. 4. (October 1997), pp. 1925-1931. by C. C. Cruickshank, R. F. Minchin, A. C. Le Dain, B. Martinac posted to pore open-closed helix conformation by dimka on 2009-10-19 05:30:49 as
	The Bax carboxy-terminal hydrophobic helix does not determine organelle-specific targeting but is essential for maintaining Bax in an inactive state and for stable mitochondrial membrane insertion [My Copy] Apoptosis by Stephanie Brock, Chi Li, Binks Wattenberg posted to state maintenance inactive helix for essential carboxy-terminal brock09pdf bax by paulschlesinger on 2009-10-13 00:58:52 as
	Structural and kinetic modeling of an activating helix switch in the rhodopsin-transducin interface. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 26. (30 June 2009), pp. 10660-10665. by Patrick Scheerer, Martin Heck, Andrean Goede, et al.Jung Hee H. Park, Hui-Woog W. Choe, Oliver P. Ernst, Klaus Peter P. Hofmann, Peter W. Hildebrand posted to transducin switch structure rhodopsin modeling kinetics helix activation by xdeupi on 2009-10-06 18:16:43 as
	Predicting helix-helix interactions from residue contacts in membrane proteins [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 996-1003. by Allan Lo, Yi-Yuan Chiu, Einar A. Rodland, Ping-Chiang Lyu, Ting-Yi Sung, Wen-Lian Hsu posted to tmhs networks membrane_proteins helix by xdeupi on 2009-10-06 18:10:55 as along with 7 people dfdong ChanghuiYan george_g friendpine neils zwang phoenixzxl
	MemBrain: improving the accuracy of predicting transmembrane helices. [My Copy] PloS one, Vol. 3, No. 6. (2008) by Hongbin Shen, James J. Chou posted to webserver tmhs theory membrane_proteins helix by xdeupi on 2009-10-06 18:00:49 as
	Position of helical kinks in membrane protein crystal structures and the accuracy of computational prediction. [My Copy] Journal of molecular graphics & modelling, Vol. 27, No. 8. (June 2009), pp. 944-950. by Spencer E. Hall, Kyle Roberts, Nagarajan Vaidehi posted to theory pro-kink membrane_proteins kinks helix by xdeupi on 2009-10-06 17:52:20 as
	Interaction of the alpha-helical H6 peptide from the pro-apoptotic protein tBid with cardiolipin. [My Copy] The FEBS journal (1 October 2009) by Patrice X. Petit, Pauline Dupaigne, Fabrizio Pariselli, et al.François Gonzalvez, François Etienne, Carole Rameau, Sophie Bernard posted to petit09pdf helix cardiolipin bid bh3 6 by paulschlesinger on 2009-10-05 02:12:23 as
	Influence of the g- conformation of Ser and Thr on the structure of transmembrane helices. [My Copy] Journal of structural biology (17 September 2009) by Xavier Deupi, Mireia Olivella, Arantxa Sanz, Nicole Dölker, Mercedes Campillo, Leonardo Pardo posted to tm5 theory structure ser plasticity helix hbond flexibility dynamics amber activation by xdeupi on 2009-09-25 14:15:01 as
	Kinetics of Helix Unfolding: Molecular Dynamics Simulations with Milestoning† [My Copy] The Journal of Physical Chemistry A, Vol. 113, No. 26. (2 July 2009), pp. 7461-7473. by Krzysztof Kuczera, Gouri S. Jas, Ron Elber posted to unfolding molecular-dynamics-simulations helix by carlosjavierna on 2009-09-05 03:55:48 as along with 1 person paulschlesinger
	Themes in RNA-protein recognition [My Copy] Journal of Molecular Biology, Vol. 293, No. 2. (22 October 1999), pp. 255-270. by D. Draper posted to themes sheet rna recognition protein helix by aditi9783 on 2009-09-04 21:12:56 as along with 3 people and 1 group morrislab svozil medic0747 Bioinformatics
	Elasticity of alpha-Helical Coiled Coils [My Copy] Physical Review Letters, Vol. 97, No. 24. (2006), 248101. by Charles W. Wolgemuth, Sean X. Sun posted to simulation persistence helix-coil helix by Vadikus on 2009-09-02 15:58:12 as
	Helical Nanofilament Phases [My Copy] Science, Vol. 325, No. 5939. (24 July 2009), pp. 456-460. by L. E. Hough, H. T. Jung, D. Kruerke, et al.M. S. Heberling, M. Nakata, C. D. Jones, D. Chen, D. R. Link, J. Zasadzinski, G. Heppke, J. P. Rabe, W. Stocker, E. Korblova, D. M. Walba, M. A. Glaser, N. A. Clark posted to cd chiral crystals helix science by marissalee on 2009-08-04 02:55:27 as
	Mechanism of Helix Induction in Poly(4-carboxyphenyl isocyanide) with Chiral Amines and Memory of the Macromolecular Helicity and Its Helical Structures [My Copy] Journal of the American Chemical Society, Vol. 131, No. 30. (5 August 2009), pp. 10719-10732. by Yoko Hase, Kanji Nagai, Hiroki Iida, et al.Katsuhiro Maeda, Noriaki Ochi, Kyoichi Sawabe, Koichi Sakajiri, Kento Okoshi, Eiji Yashima posted to cd helix jacs by marissalee on 2009-08-04 02:54:27 as
	An α/β-Peptide Helix Bundle with a Pure β3-Amino Acid Core and a Distinctive Quaternary Structure [My Copy] Journal of the American Chemical Society, Vol. 131, No. 29. (29 July 2009), pp. 9860-9861. by Michael W. Giuliano, W. Seth Horne, Samuel H. Gellman posted to amino-acid helix peptide by carlosjavierna on 2009-07-28 23:48:37 as
	Structures of N-termini of helices in proteins. [My Copy] Protein science : a publication of the Protein Society, Vol. 6, No. 1. (January 1997), pp. 147-155. by A. J. Doig, M. W. MacArthur, B. J. Stapley, J. M. Thornton posted to helix proteins thornton by carlosjavierna on 2009-07-17 02:16:23 as
	Distinctions between hydrophobic helices in globular proteins and transmembrane segments as factors in protein sorting [My Copy] J. Biol. Chem., Vol. 284, No. 8. (18 December 2008), pp. M809017200-5402. by Fiona Cunningham, Arianna Rath, Rachel M. Johnson, Charles M. Deber posted to helix by carlosjavierna on 2009-07-17 01:51:23 as along with 1 person paulschlesinger
	Insertion of short transmembrane helices by the Sec61 translocon. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 28. (14 July 2009), pp. 11588-11593. by Simon Jaud, Mónica Fernández-Vidal, Ingmarie Nilsson, et al.Nadja M. Meindl-Beinker, Nadja C. Hübner, Douglas J. Tobias, Gunnar von Heijne, Stephen H. White posted to helix leu leucine by carlosjavierna on 2009-07-16 00:39:43 as
	QTAIM Study of an α-Helix Hydrogen Bond Network [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Shenna M. Lapointe, Sarah Farrag, Hugo J. Bohórquez, Russell J. Boyd posted to alpha dft h-bond helix qtaim by sfarrag on 2009-07-13 20:38:20 as along with 3 people thegoose carlosjavierna qshao
	Molecular Dynamics Investigations on the Effect of d Amino Acid Substitution in a Triple-Helix Structure and the Stability of Collagen [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 26. (2 July 2009), pp. 8983-8992. by V. Punitha, Sundar S. Raman, R. Parthasarathi, et al.V. Subramanian, J. Raghava Rao, Balachandran U. Nair, T. Ramasami posted to ala alanine amber amino-acid amino-acids helix molecular-dynamics molecular-dynamics-simulations by carlosjavierna on 2009-07-13 06:05:04 as
	Optimized Molecular Dynamics Force Fields Applied to the Helix−Coil Transition of Polypeptides [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 26. (2 July 2009), pp. 9004-9015. by Robert B. Best, Gerhard Hummer posted to coil force-field force-fields helix hummer molecular-dynamics polypeptides by carlosjavierna on 2009-07-13 06:02:42 as
	Free-energy determinants of alpha-helix insertion into lipid bilayers [My Copy] Vol. 70, No. 4. (1 April 1996), pp. 1803-1812. by N. Ben-Tal, A. Ben-Shaul, A. Nicholls, B. Honig posted to bental96pdf energy free helix insertion membrane by paulschlesinger on 2009-07-02 01:20:31 as
	Amphiphilicity Determines Binding Properties of Three Mitochondrial Presequences to Lipid Surfaces† [My Copy] Biochemistry, Vol. 35, No. 12. (1 January 1996), pp. 3772-3781. by P. K. Hammen, D. G. Gorenstein, H. Weiner posted to binding hammen96pdf helix membrane n-terminal presequence rhodanese stabilization by paulschlesinger on 2009-06-03 02:01:05 as
	Interaction of a Mitochondrial Presequence with Lipid Membranes: Role of Helix Formation for Membrane Binding and Perturbation† [My Copy] Biochemistry, Vol. 39, No. 50. (1 December 2000), pp. 15297-15305. by Torsten Wieprecht, Ognjan Apostolov, Michael Beyermann, Joachim Seelig posted to helix membrane presequence rhodanese stabilization wiepre00pdf by paulschlesinger on 2009-06-03 01:44:24 as
	Sequence and helicity requirements for the proapoptotic activity of Bax BH3 peptides. [My Copy] Molecular cancer therapeutics, Vol. 3, No. 11. (November 2004), pp. 1343-1354. by S. Shangary, C. L. Oliver, T. S. Tillman, M. Cascio, D. E. Johnson posted to activity apoptosis helix peptides sequence shangar04pdf by paulschlesinger on 2009-05-24 03:07:27 as
	Molecular dynamics guided study of salt bridge length dependence in both fluorinated and non-fluorinated parallel dimeric coiled-coils [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Scott S. Pendley, Yihua B. Yu, Thomas E. Cheatham posted to alpha amino ff99sb helix helix-coil long_run molecular simulation water_solution by Vadikus on 2009-05-18 17:22:21 as along with 2 people and 1 group oteri Lombardo_7 LOX-1 Receptor
	Hydrogen bonding in globular proteins [My Copy] Progress in Biophysics and Molecular Biology, Vol. 44, No. 2. (1984), pp. 97-179. by E. Baker posted to 3_10 alpha hbond helix pi by Vadikus on 2009-05-08 13:03:37 as
	Energetics of Infinite Homopolypeptide Chains: A New Look at Commonly Used Force Fields [My Copy] J. Phys. Chem. B (14 May 2008) by Evgeni Penev, Joel Ireta, Joan-Emma Shea posted to 3_10 alpha cv energy ff ff99sb helicity helix molecular pi simulation by Vadikus on 2009-05-07 04:33:30 as along with 1 person middledomain
	PROSIGN: A method for protein secondary structure assignment based on three-dimensional coordinates of consecutive Cα atoms☆ [My Copy] Computational Biology and Chemistry, Vol. 32, No. 6. (December 2008), pp. 406-411. by S. Hosseini, M. Sadeghi, H. Pezeshk, C. Eslahchi, M. Habibi posted to cv helicity helix simulation by Vadikus on 2009-05-07 03:51:56 as
	Chapter 1 Stability and Design of α-Helical Peptides [My Copy] In Molecular Biology of Protein Folding, Part A, Vol. 83 (2008), pp. 1-52. by A. Doig posted to 3_10 acid alanine alpha amino dihedrals helix by Vadikus on 2009-05-06 16:52:12 as
	Inter-helical Interactions in Membrane Proteins: Analysis Based on the Local Backbone Geometry and the Side Chain Interactions. [My Copy] Journal of biomolecular structure & dynamics, Vol. 26, No. 6. (June 2009), pp. 719-730. by A. N. Jha, S. Vishveshwara posted to dimer helix membrane_proteins structure theory transmembrane by xdeupi on 2009-05-06 09:54:37 as
	Helix Forming Tendency of Valine Substituted Poly-Alanine: A Molecular Dynamics Investigation [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 30. (1 July 2008), pp. 9100-9104. by Sundar S. Raman, R. Vijayaraj, R. Parthasarathi, V. Subramanian posted to 3_10 alanine alpha helix simulation read by Vadikus on 2009-05-04 04:03:39 as
	Solution Structure of a Bent α-Helix, [My Copy] Biochemistry (17 October 2007) by L. Zhang, D. Morikis posted to alpha experiment helix nmr read by Vadikus on 2009-05-04 02:51:49 as along with 1 person paulschlesinger
	Studies of peptides forming 310- and .alpha.-helixes and .beta.-bend ribbon structures in organic solution and in model biomembranes by Fourier transform infrared spectroscopy [My Copy] Biochemistry, Vol. 30, No. 26. (1 July 1991), pp. 6541-6548. by D. F. Kennedy, M. Crisma, C. Toniolo, D. Chapman posted to 3_10 aib alpha helix irspectroscopy read by Vadikus on 2009-05-04 00:20:22 as
	The polypeptide 310-helix [My Copy] Trends in Biochemical Sciences, Vol. 16 (1991), pp. 350-353. by C. Tonlolo, E. Benedetti posted to 3_10 aib dihedrals helix read by Vadikus on 2009-05-03 23:57:30 as
	Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. [My Copy] Nature, Vol. 171, No. 4356. (25 April 1953), pp. 737-738. by J. D. WATSON, F. H. CRICK posted to acid acids crick deoxyribose dna double helix molecular nucleic nucleotides strand structure watson by fisherp on 2009-04-18 18:26:03 as along with 13 people and 2 groups thegoose myzhang superedu ecattell jwm dullhunk craigtalbert treangen tvdbulck megs incovoma candypmcg dna Radiation_Damage Stressosome
	Wide turn diversity in protein transmembrane helices implications for G-protein-coupled receptor and other polytopic membrane protein structure and function. [My Copy] Molecular pharmacology, Vol. 73, No. 4. (April 2008), pp. 1092-1104. by R. Peter Riek, Angela A. Finch, Gillian E. Begg, Robert M. Graham posted to flexibility helix membrane_proteins modeling pro-kink ser structure theory thr transmembrane by xdeupi on 2009-04-17 11:47:42 as
	A periodicity analysis of transmembrane helices [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2604-2610. by Hadas Leonov, Isaiah T. Arkin posted to analysis computational helix transmembrane by neils on 2009-04-13 09:36:40 as
	Utility of Surface Supported Bilayers in Studies of Transmembrane Helix Dimerization [My Copy] Journal of Structural Biology (20 March 2009) by Edwin Li, Mikhail Merzlyakov, Janice Lin, Peter Searson, Kalina Hristova posted to bilyer dimerization helix li09pdf supported transmembrane by paulschlesinger on 2009-03-23 01:55:21 as
	Preparation and Properties of Asymmetric Vesicles That Mimic Cell Membranes: EFFECT UPON LIPID RAFT FORMATION AND TRANSMEMBRANE HELIX ORIENTATION [My Copy] J. Biol. Chem., Vol. 284, No. 10. (6 March 2009), pp. 6079-6092. by Hui-Ting Cheng, Megha, Erwin London posted to asymmetric cheng09apdf helix liposome orientation transmembrane by paulschlesinger on 2009-02-28 00:26:24 as along with 2 people WFPaxton faion
	α-Synuclein Binds Large Unilamellar Vesicles as an Extended Helix† [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by Adam J. Trexler, Elizabeth Rhoades posted to binding extended helix synucleinliposome trexler09pdf by paulschlesinger on 2009-02-27 01:40:24 as
	New x-ray diffraction results from agarose: Extended single helix structures and implications for gelation mechanism [My Copy] Biopolymers, Vol. 28, No. 8. (1989), pp. 1345-1365. by S. A. Foord, E. D. Y. Atkins posted to agarose diffraction doublehelix helix structure x-ray by paddydu on 2009-02-24 16:34:13 as
	The agarose double helix and its function in agarose gel structure [My Copy] Journal of Molecular Biology, Vol. 90, No. 2. (December 1974), pp. 269-272. by Struther Arnott, A. Fulmer, W. E. Scott posted to agarose doublehelix function helix network water by paddydu on 2009-02-24 15:29:32 as
	Molecular modeling of agarose helices, leading to the prediction of crystalline allomorphs [My Copy] Biopolymers, Vol. 46, No. 1. (1998), pp. 11-29. by Milou Kouwijzer, Serge Pérez posted to agarose doublehelix energy helix minimization model polysaccharide simulation tripos by paddydu on 2009-02-24 15:19:11 as
	Thermodynamics of the alpha-helix-coil transition of amphipathic peptides in a membrane environment: implications for the peptide-membrane binding equilibrium. [My Copy] Journal of molecular biology, Vol. 294, No. 3. (3 December 1999), pp. 785-794. by T. Wieprecht, O. Apostolov, M. Beyermann, J. Seelig posted to coli helix membrane peptides thermodynamics transition wiepre99pdf by paulschlesinger on 2009-02-20 00:31:56 as
	Is use of the hydrophobic moment a sound basis for predicting the structure-function relationships of membrane interactive alpha-helices? [My Copy] Current protein & peptide science, Vol. 4, No. 5. (October 2003), pp. 357-366. by D. Phoenix, F. Harris posted to function helix membrane phoen09pdf structure thermodynamics by paulschlesinger on 2009-02-13 01:35:42 as
	Mechanism of Antibacterial Action of Dermaseptin B2: Interplay between Helix−Hinge−Helix Structure and Membrane Curvature Strain† [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by Cécile Galanth, Feten Abbassi, Olivier Lequin, et al.Jésus Ayala-Sanmartin, Ali Ladram, Pierre Nicolas, Mohamed Amiche posted to galant08pdf helix hinge membrane peptide structure by paulschlesinger on 2008-12-31 00:24:08 as along with 1 person agrossfield
	A role for the two-helix finger of the SecA ATPase in protein translocation [My Copy] Nature, Vol. 455, No. 7215., pp. 984-987. by Karl J. Erlandson, Stephanie B. M. Miller, Yunsun Nam, Andrew R. Osborne, Jochen Zimmer, Tom A. Rapoport posted to helix two-finger by lpierce on 2008-11-25 02:37:54 as along with 1 person neils

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transmembrane	62
structure	54
membrane_proteins	26
membrane	24
activation	21
pro-kink	15
alpha	14
ser	14
sequence	13
modeling	12
protein	11
review	11
gpcr	10
hbond	10
md	10
dynamics	9
folding	9
binding	8
cd	8
gly	8
loops	8
mutation	8
dimer	7
nmr	7
rhodopsin	7
simulation	7
switch	7
thr	7
3_10	6
theory	6
capping	5
flexibility	5
peptide	5
triple	5
b2ar	4
ccr5	4
conformation	4
lipids	4
modelling	4
propensity	4
read	4
tfe	4
tm2	4
tm3	4
tm6	4
toggle	4
acid	3
agarose	3
alanine	3
amino	3
beta-13-glucans	3
coil	3
doublehelix	3
energy	3
forschungsmethode	3
molecular	3
release	3
snare	3
stabilization	3
tm5	3
unfolding	3
vp16	3
310	2
activator	2
aib	2
apoptosis	2
azobenzene	2
channel	2
complexin	2
crick	2
cv	2
double	2
evolution	2
ff99sb	2
fret	2
function	2
glucan	2
glucans	2
hydrogen	2
interaction	2
kinetics	2
ligands	2
lmc_101	2
mechanism	2
molecular-dynamics	2
mutagenesis	2
n-terminal	2
nervous-system	2
peptides	2
pi	2
pre	2
prediction	2
presequence	2
presynapse	2
priming	2
receptor	2
rhodanese	2
rna	2
rrp	2
sds	2

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