Tag hgt [146 articles] Export

Recent papers classified by the tag hgt.

	Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (22 July 2008), pp. 10039-10044. by Tal Dagan, Yael Artzy-Randrup, William Martin posted to prokaryote hgt genome-evolution dupvshgt by treangen on 2009-10-29 15:24:48 as along with 3 people AaronDarling tomhebbron druvus
	On the need for widespread horizontal gene transfers under genome size constraint [My Copy] Biology Direct, Vol. 4, No. 1. (25 August 2009), 28. by Herve Isambert, Richard Stein posted to prokaryote hgt dupvshgt by treangen on 2009-10-29 15:21:20 as along with 2 people gwallau aprasad
	Prokaryotic evolution and the tree of life are two different things [My Copy] Biology Direct, Vol. 4, No. 1. (29 September 2009), 34. by Eric Bapteste, Maureen O'Malley, Robert Beiko, et al.Marc Ereshefsky, J. Peter Gogarten, Laura F. Hall, Francois J. Lapointe, John Dupre, Tal Dagan, Yan Boucher, William Martin posted to tree_of_life prokaryote hgt evolution core-genomoe by treangen on 2009-10-29 14:59:52 as along with 2 people calderonv barriot
	Ancestral genome sizes specify the minimum rate of lateral gene transfer during prokaryote evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 3. (16 January 2007), pp. 870-875. by Tal Dagan, William Martin posted to prokaryote hgt dupvshgt by treangen on 2009-10-22 18:12:06 as along with 2 people AaronDarling operon
	Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus [My Copy] Genome Research, Vol. 19, No. 8. (August 2009), pp. 1441-1449. by Adam Monier, António Pagarete, Colomban de Vargas, et al.Michael J. Allen, Betsy Read, Jean-Michel Claverie, Hiroyuki Ogata posted to algea evolution hgt marine ocean virus by sharpton on 2009-08-06 21:58:50 as along with 1 person and 2 groups gwallau LabDros iSEEM
	Ancient Horizontal Gene Transfer from Bacteria Enhances Biosynthetic Capabilities of Fungi [My Copy] PLoS ONE, Vol. 4, No. 2. (12 February 2009), e4437. by Imke Schmitt, Thorsten H. Lumbsch posted to fungi hgt by GustavoLacerda on 2009-08-04 18:12:37 as along with 2 people and 1 group bcondon stajich Mycology
	Search for a 'Tree of Life' in the thicket of the phylogenetic forest [My Copy] Journal of Biology, Vol. 8, No. 6. (2009), 59. by Pere Puigbo, Yuri Wolf, Eugene Koonin posted to evolution hgt phylogeny prokaryotes by behindtherabbit on 2009-07-16 17:48:04 as along with 5 people livingthingdan pablocarb druvus barriot kiekyon
	Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial “pan-genome” [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13950-13955. by Hervé Tettelin, Vega Masignani, Michael J. Cieslewicz, et al.Claudio Donati, Duccio Medini, Naomi L. Ward, Samuel V. Angiuoli, Jonathan Crabtree, Amanda L. Jones, A. Scott Durkin, Robert T. DeBoy, Tanja M. Davidsen, Marirosa Mora, Maria Scarselli, Margarit, Jeremy D. Peterson, Christopher R. Hauser, Jaideep P. Sundaram, William C. Nelson, Ramana Madupu, Lauren M. Brinkac, Robert J. Dodson, Mary J. Rosovitz, Steven A. Sullivan, Sean C. Daugherty, Daniel H. Haft, Jeremy Selengut, Michelle L. Gwinn, Liwei Zhou, Nikhat Zafar, Hoda Khouri, Diana Radune, George Dimitrov, Kisha Watkins, Kevin J. B. O'Connor, Shannon Smith, Teresa R. Utterback, Owen White, Craig E. Rubens, Guido Grandi, Lawrence C. Madoff, Dennis L. Kasper, John L. Telford, Michael R. Wessels, Rino Rappuoli, Claire M. Fraser posted to comparative core genome genomics hgt pangenome population prokaryotes by sharpton to the group iSEEM on 2009-07-14 20:00:07 as along with 4 people nyyu azazello druvus AaronDarling
	Darwinian evolution in the light of genomics [My Copy] Nucl. Acids Res., Vol. 37, No. 4. (1 March 2009), pp. 1011-1034. by Eugene V. Koonin posted to conceptual evolution genomics hgt by mlog on 2009-06-24 14:47:29 as along with 23 people and 2 groups jasontsai vvoorr qayub michaelbarton polivares pawelsobko Zephyrus gwallau dayjm nurban natstreet druvus biomcgary tomhebbron haloin VGreiff lizbiogen inquil lp2 gjuggler guhjy sebastien_vigneau sjcockell Journal picks LabDros
	Systemic Aspects of Biological Evolution [My Copy] Journal of Biotechnology (02 June 2009) by Werner Arber posted to biology evolution genetics hgt systems-biology by behindtherabbit on 2009-06-04 15:28:00 as
	Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification. [My Copy] Molecular biology and evolution, Vol. 25, No. 9. (8 September 2008), pp. 1955-1966. by Christopher M. Jones, Blaz Stres, Magnus Rosenquist, Sara Hallin posted to convergent denitrification evolution hgt nirk nirs nosz by elbrodie on 2009-05-14 20:27:58 as along with 3 people and 2 groups halinat neils Katje Shared Literature Resource of the Microbial Fitness Group - MPI Bremen microbiology_nijmegen
	MOBILE GENETIC ELEMENTS: THE AGENTS OF OPEN SOURCE EVOLUTION [My Copy] Nat Rev Micro, Vol. 3, No. 9. (2005), pp. 722-732. by Laura S. Frost, Raphael Leplae, Anne O. Summers, Ariane Toussaint posted to gene hgt horizontal metamobilome mobilome transfer by rec3141 on 2009-04-28 21:53:51 as along with 4 people orzenil dakelley cdallett karfunkel
	Horizontal Gene Transfers in prokaryotes show differential preferences for metabolic and translational genes [My Copy] BMC Evolutionary Biology, Vol. 9 (10 January 2009), 9. by Aditi Kanhere, Martin Vingron posted to hgt method by treangen on 2009-04-28 09:20:00 as
	The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes. [My Copy] Genome biology, Vol. 10, No. 4. (15 April 2009), R36. by John W. Whitaker, Glenn A. McConkey, David R. Westhead posted to egt enzymes evolution hgt metabolic-networks metatiger phylogenetics phylogenomics transferome by johnwhitaker on 2009-04-20 20:59:07 as along with 6 people and 1 group barriot michaelbarton Thaverkamp cmzmasek neils biomcgary Microbial-Ecology
	Intergeneric transfer of ribosomal genes between two fungi [My Copy] BMC Evolutionary Biology, Vol. 8 (18 March 2008), 87. by Jiatao Xie, Yanping Fu, Daohong Jiang, et al.Guoqing Li, Junbin Huang, Bo Li, Tom Hsiang, Youliang Peng posted to fungi hgt rdna by fungal on 2009-04-07 06:44:11 as along with 2 people and 1 group GustavoLacerda stajich Mycology
	Lateral gene transfer and the nature of bacterial innovation [My Copy] Nature, Vol. 405, No. 6784. (18 May 2000), pp. 299-304. by Howard Ochman, Jeffrey G. Lawrence, Eduardo A. Groisman posted to hgt by cambray on 2009-03-18 11:51:32 as along with 12 people and 2 groups kmachemer pkm mikheyev balicea johanviklund cmzmasek ana gregdingle jmeppley Ayest treangen manzanita structural_bioinformatics Bioinformatics
	Genomic islands are dynamic, ancient integrative elements in bacterial evolution [My Copy] Trends in Microbiology, Vol. 17, No. 2. (February 2009), pp. 47-53. by Fidelma E. Boyd, Salvador Almagro-Moreno, Michelle A. Parent posted to hgt recombination by cambray on 2009-03-17 13:37:00 as along with 1 person mmourez
	Horizontal gene transfer, genome innovation and evolution [My Copy] Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 679-687. by Peter J. Gogarten, Jeffrey P. Townsend posted to evolution gene hgt lateral lgt transfer by ramiro2k on 2009-03-16 21:13:35 as along with 7 people and 1 group matzke jwortman imouthesmp ryang dbikard kinestetika karfunkel microbiology_nijmegen
	Prokaryotic evolution in light of gene transfer. [My Copy] Mol Biol Evol, Vol. 19, No. 12. (December 2002), pp. 2226-2238. by J. P. Gogarten, W. F. Doolittle, J. G. Lawrence posted to evolution gene hgt lateral lgt transfer by ramiro2k on 2009-03-16 21:11:40 as along with 4 people johanviklund jmeppley AaronDarling Tingting
	Horizontal gene transfer in eukaryotic evolution [My Copy] Nature Reviews Genetics, Vol. 9, No. 8. (01 August 2008), pp. 605-618. by Patrick J. Keeling, Jeffrey D. Palmer posted to evolution hgt horizontal_gene_transfer by fungal on 2009-03-16 20:22:07 as along with 9 people mordiano kmachemer gwallau tomhebbron dcolosi treangen Anachff dakelley bootsy
	Elusive origins of the extra genes in Aspergillus oryzae. [My Copy] PloS one, Vol. 3, No. 8. (2008) by Nora Khaldi, Kenneth H. Wolfe posted to aspergillus fungi genome hgt horizontal oryzae by fungal on 2009-02-11 22:11:57 as along with 1 person GustavoLacerda
	Horizontal gene transfer: A critical view [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 17. (19 August 2003), pp. 9658-9662. by C. G. Kurland, B. Canback, Otto G. Berg posted to hgt microbial review by yonatanf on 2009-02-09 17:55:29 as along with 5 people aprasad Scis0000002 johanviklund operon jmeppley
	Evolution of Microbial Genomes: Sequence Acquisition and Loss [My Copy] Mol Biol Evol, Vol. 19, No. 12. (1 December 2002), pp. 2265-2276. by Otto G. Berg, C. G. Kurland posted to acquisition deletion evolution genome hgt indel insertaion microbial variation by yonatanf on 2009-02-09 17:49:19 as along with 2 people Scis0000002 AaronDarling
	Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli [My Copy] Genome Biology, Vol. 9, No. 1. (07 January 2008), R4. by Morgan Price, Paramvir Dehal, Adam Arkin posted to evolution hgt regulation by erel10 on 2009-02-04 18:35:41 as along with 1 person biomcgary
	CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA [My Copy] Science, Vol. 322, No. 5909. (19 December 2008), pp. 1843-1845. by Luciano A. Marraffini, Erik J. Sontheimer posted to conjugation cripsr hgt transformation by cambray on 2009-01-28 09:39:42 as along with 3 people azazello ramanuja rjlawren
	The cobweb of life revealed by genome-scale estimates of horizontal gene transfer. [My Copy] PLoS Biol, Vol. 3, No. 10. (October 2005) by F. Ge, L. S. Wang, J. Kim posted to hgt microbial phylogenomics by sriesenfeld on 2009-01-07 00:16:41 as along with 4 people and 2 groups operon ana jmeppley AaronDarling structural_bioinformatics Bioinformatics
	Computational inference of scenarios for alpha-proteobacterial genome evolution. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 26. (29 June 2004), pp. 9722-9727. by B. Boussau, E. O. Karlberg, A. C. Frank, B. A. Legault, S. G. Andersson posted to alphaproteobacteria bioinformatics evolution hgt paper1 reconstruction by johanviklund on 2008-12-15 20:55:25 as along with 3 people knaseanka bjorns radek
	Mobile genetic elements: the agents of open source evolution [My Copy] Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 722-732. by Laura S. Frost, Raphael Leplae, Anne O. Summers, Ariane Toussaint posted to evolution hgt paper1 by johanviklund on 2008-12-15 20:54:19 as along with 1 person dayjm
	Dealing with incongruence in phylogenomic analyses. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 363, No. 1512. (27 December 2008), pp. 4023-4029. by Nicolas Galtier, Vincent Daubin posted to bacteria hgt phylogeny by sconlan on 2008-12-12 20:10:38 as along with 4 people operon aprasad skembel treangen
	Ecological fitness, genomic islands and bacterial pathogenicity. A Darwinian view of the evolution of microbes. [My Copy] EMBO reports, Vol. 2, No. 5. (May 2001), pp. 376-381. by J. Hacker, E. Carniel posted to bacteria evolution fitness gene genome genomic hgt islands pathogenesis pathogenicity review transfer by behindtherabbit on 2008-12-05 14:30:37 as
	Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure [My Copy] BMC Evolutionary Biology, Vol. 7 (02 July 2007), 106. by Elie Desmond, Celine Brochier-Armanet, Simonetta Gribaldo posted to abitalk archael eukaryote hgt motility phylogenomics by treangen on 2008-12-05 09:35:41 as
	Selection for gene clustering by tandem duplication. [My Copy] Annu Rev Microbiol, Vol. 58 (2004), pp. 119-142. by A. B. Reams, E. L. Neidle posted to clustering gene hgt prokaryote tandem-duplication by treangen on 2008-11-27 09:38:42 as along with 4 people arooney druvus rabu fhsantanna
	Uncovering rate variation of lateral gene transfer during bacterial genome evolution [My Copy] BMC Genomics, Vol. 9 (20 May 2008), 235. by Weilong Hao, Brian Golding posted to bacteria evolution genome hgt by treangen on 2008-11-26 20:47:14 as
	Direct Visualization of Horizontal Gene Transfer [My Copy] Science, Vol. 319, No. 5869. (14 March 2008), pp. 1533-1536. by Ana Babic, Ariel B. Lindner, Marin Vulic, Eric J. Stewart, Miroslav Radman posted to bacteria ecoli hgt visualization by treangen on 2008-11-26 09:29:35 as along with 6 people yyfwuhan madhadron zwang niallhaslam melting dbikard
	Reconstructing evolution of sequences subject to recombination using parsimony. [My Copy] Mathematical biosciences, Vol. 98, No. 2. (March 1990), pp. 185-200. by J. Hein posted to hgt parsimony phylogeny recombination reconstruction by treangen on 2008-11-25 18:50:02 as
	MICROBIOLOGY: How to Infect a Mimivirus [My Copy] Science, Vol. 321, No. 5894. (5 September 2008), pp. 1305-1306. by Hiroyuki Ogata, Jean-Michel Claverie posted to hgt review virus by treangen on 2008-11-25 13:18:09 as
	The evolutionary origin of Xanthomonadales genomes and the nature of the horizontal gene transfer process. [My Copy] Molecular biology and evolution, Vol. 23, No. 11. (November 2006), pp. 2049-2057. by I. Comas, A. Moya, R. K. Azad, J. G. Lawrence, F. Gonzalez-Candelas posted to bacteria genome hgt study xanthomonadales by treangen on 2008-11-25 12:56:09 as
	Detecting Horizontally Transferred and Essential Genes Based on Dinucleotide Relative Abundance [My Copy] DNA Res, Vol. 15, No. 5. (1 October 2008), pp. 267-276. by Robert H. Baran, Hanseok Ko posted to abundance dinucleotide essential-genes hgt by treangen on 2008-11-25 09:32:48 as along with 1 person azazello
	Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 46. (18 November 2008), pp. 17867-17871. by Mary E. Rumpho, Jared M. Worful, Jungho Lee, et al.Krishna Kannan, Mary S. Tyler, Debashish Bhattacharya, Ahmed Moustafa, James R. Manhart posted to hgt mollusca photosynthesis by smit2jam on 2008-11-24 02:52:40 as along with 9 people and 2 groups kmachemer wiedenhoeft ltitodem neils operon mlog vaulot cmzmasek ahmedmoustafa Papers recommended by the Roscoff Plankton Group Microbial-Ecology
	Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi [My Copy] Genome Biology, Vol. 9, No. 1. (2008) by Nora Khaldi, Jerome Collemare, Marc H. Lebrun, Kenneth Wolfe posted to hgt by GustavoLacerda on 2008-11-23 21:57:28 as along with 3 people and 1 group michC stajich biomcgary Mycology
	Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes [My Copy] Science, Vol. 317, No. 5845. (21 September 2007), pp. 1753-1756. by Julie C. Hotopp, Michael E. Clark, Deodoro C. S. G. Oliveira, et al.Jeremy M. Foster, Peter Fischer, Monica C. Torres, Jonathan D. Giebel, Nikhil Kumar, Nadeeza Ishmael, Shiliang Wang, Jessica Ingram, Rahul V. Nene, Jessica Shepard, Jeffrey Tomkins, Stephen Richards, David J. Spiro, Elodie Ghedin, Barton E. Slatko, Herve Tettelin, John H. Werren posted to bacteria eukaryote gene-transfer hgt by treangen on 2008-11-21 13:16:28 as along with 10 people and 2 groups kmachemer operon dpollard bluto zwang emmahe lp2 wrowell paulschlesinger Patola EisenLab Cline_lab
	The emergence and fate of horizontally acquired genes in Escherichia coli. [My Copy] PLoS computational biology, Vol. 4, No. 4. (April 2008) by Mark W. van Passel, Pradeep Reddy R. Marri, Howard Ochman posted to bacteria dupvshgt ecoli evolution genome hgt hops organs by treangen on 2008-11-21 09:50:28 as
	Gene transfer in bacteria: speciation without species? [My Copy] Theor Popul Biol, Vol. 61, No. 4. (June 2002), pp. 449-460. by J. G. Lawrence posted to bacteria gene-transfer hgt speciation species by treangen on 2008-11-19 13:30:24 as along with 4 people druvus jmeppley AaronDarling manzanita
	Genetic flux over time in the Salmonella lineage [My Copy] Genome Biology, Vol. 8 (04 June 2007), R100. by Georgios S. Vernikos, Nicholas R. Thomson, Julian Parkhill posted to bacteria evolution gene-flux genome genome-evolution hgt by treangen on 2008-11-19 13:21:57 as along with 2 people druvus AaronDarling
	Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world [My Copy] Nucl. Acids Res., Vol. 36, No. 21. (1 December 2008), pp. 6688-6719. by Eugene V. Koonin, Yuri I. Wolf posted to archaea bacteria evolution genomics hgt network phylogeny review by neils on 2008-10-28 23:03:57 as along with 10 people and 2 groups pkm skembel Huub_odc druvus johanviklund sbottani Katje nklee barriot aramata Centre de Recherches Interdisciplinaires microbiology_nijmegen
	Amelioration of Bacterial Genomes: Rates of Change and Exchange [My Copy] Journal of Molecular Evolution, Vol. 44, No. 4. (1 April 1997), pp. 383-397. by ,, Jeffrey G. Lawrence, ,, Howard Ochman posted to codon_usage evolution hgt mutation by cambray on 2008-09-02 13:42:10 as along with 1 person karfunkel
	Ancient horizontal gene transfer [My Copy] Nat Rev Genet, Vol. 4, No. 2. (February 2003), pp. 121-132. by James R. Brown posted to ancient hgt review by fhsantanna on 2008-08-06 03:11:33 as
	Preferential attachment in the evolution of metabolic networks. [My Copy] BMC Genomics, Vol. 6 (2005) by S. Light, P. Kraulis, A. Elofsson posted to evolution hgt metabolic network by gcarbajosa on 2008-07-30 15:45:06 as along with 1 person pekrau
	Lateral gene transfer: when will adolescence end? [My Copy] Mol Microbiol, Vol. 50, No. 3. (November 2003), pp. 739-749. by J. G. Lawrence, H. Hendrickson posted to evolution hgt theory by gcarbajosa on 2008-07-30 15:43:57 as along with 3 people jmeppley AaronDarling treangen
	Internal Versus External Effector and Transcription Factor Gene Pairs Differ in Their Relative Chromosomal Position in Escherichia coli. [My Copy] J Mol Biol (12 January 2007) by Sarath Chandra C. Janga, Heladia Salgado, Julio Collado-Vides, Agustino Martínez-Antonio posted to distance hgt regulation signal transcription by gcarbajosa on 2008-07-30 15:39:52 as along with 1 person and 1 group icases TNT

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evolution	46
comparative_genomics	24
phylogeny	23
genome	19
genome_evolution	18
protein_sequence	18
protein_evolution	15
bacteria	13
sequence_comparison	12
gene	10
orthology	10
transfer	10
virulence_factor	9
horizontal	7
phylogenomics	7
taxonomy	7
prokaryote	6
review	6
fungi	5
genomics	5
network	5
codon_bias	4
dupvshgt	4
lateral	4
lgt	4
tree_of_life	4
amelioration	3
base_composition	3
bioinformatics	3
function_prediction	3
gc	3
gene-transfer	3
gene_duplication	3
genome-evolution	3
microbial	3
molecular_mimicry	3
operons	3
paper1	3
phylogenetics	3
prokaryotes	3
protein_function	3
recombination	3
regulation	3
unicellular	3
ancient	2
archaea	2
comparative	2
core	2
ecoli	2
enzyme	2
eukaryot	2
eukaryote	2
gene-networks	2
gene-regulation	2
genetics	2
grn	2
horizontal_gene_transfer	2
lysogeny	2
metabolic	2
modularity	2
mollusca	2
pangenome	2
parsimony	2
photosynthesis	2
population	2
prokaryotic	2
reconstruction	2
selfish	2
transcription	2
tree	2
virus	2
abitalk	1
bdelloid	1
bioinfpdl	1
conceptual	1
convergent	1
denitrification	1
enzymes	1
eukarya	1
gebe	1
genomic	1
genomic-islands	1
lineages	1
marine	1
metabolic-networks	1
methods	1
module	1
nirk	1
nosz	1
pathogenesis	1
sequences	1
shi	1
slug	1
study	1
systems-biology	1
tandem-duplication	1
techniques	1
transformation	1
variation	1
xanthomonadales	1

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