Tag high-throughput-sequencing [137 articles] Export

Recent papers classified by the tag high-throughput-sequencing.

	Swift: primary data analysis for the Illumina Solexa sequencing platform [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2194-2199. by Nava Whiteford, Tom Skelly, Christina Curtis, et al.Matt E. Ritchie, Andrea Lohr, Alexander W. Zaranek, Irina Abnizova, Clive Brown posted to pipeline high-throughput-sequencing analysis by humburg on 2009-12-08 17:36:07 as along with 22 people and 4 groups n00c heliopais hzoltan dakelley sotacam lh49 djkt rtogawa cassj dswan torfinnnome rschulz natstreet druvus jasontsai jmeppley ghattem nuin polivares aprasad niallhaslam idoerg Bioinformatics BergmanLab SIMR bioinformatics Journal picks
	Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 24. (15 December 2009), pp. 3207-3212. by Jacob F. Degner, John C. Marioni, Athma A. Pai, et al.Joseph K. Pickrell, Everlyne Nkadori, Yoav Gilad, Jonathan K. Pritchard posted to snp sequencing-error high-throughput-sequencing by humburg on 2009-12-08 16:20:35 as along with 7 people dakelley natstreet chvlyl n00c papamicd torfinnnome heliopais
	ChIP-Seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells [My Copy] In Proceedings of the National Academy of Sciences (7 December 2009) by Zhengqing Ouyang, Qing Zhou, Wing H. Wong posted to high-throughput-sequencing chip-seq by heliopais on 2009-12-08 09:31:12 as
	Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5â²-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes [My Copy] Genome Research In Genome Research, Vol. 18, No. 10. (9 October 2008), pp. 1571-1581. by Jeffrey G. Reid, Ankur K. Nagaraja, Francis C. Lynn, et al.Rafal B. Drabek, Donna M. Muzny, Chad A. Shaw, Michelle K. Weiss, Arash O. Naghavi, Mahjabeen Khan, Huifeng Zhu, Jayantha Tennakoon, Gemunu H. Gunaratne, David B. Corry, Jonathan Miller, Michael T. McManus, Michael S. German, Richard A. Gibbs, Martin M. Matzuk, Preethi H. Gunaratne posted to microrna let-7 isomir high-throughput-sequencing by heliopais to the group microRNA on 2009-12-07 16:08:06 as along with 3 people maralena bootsy gdb
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology In PLoS Computational Biology, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted to high-throughput-sequencing by heliopais on 2009-12-07 15:37:02 as along with 46 people and 4 groups jforment jfr burak idoerg Geknitics cthachuk hzoltan chvlyl sameersoi hpaces gdv GeeSharpMinor idonaldson darian daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton dswan reyez kshameer TRHvidsten djkt ppgardne Bioinformatics Core Service BergmanLab Bioinformatics Journal picks
	mRNA-sequencing whole transcriptome analysis of a single cell on the SOLiD system. [My Copy] Journal of biomolecular techniques : JBT, Vol. 20, No. 5. (December 2009), pp. 266-271. by Kai Q. Lao, Fuchou Tang, Catalin Barbacioru, et al.Yangzhou Wang, Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, Brain Tuch, John Bodeau, Asim Siddiqui, M. Azim Surani posted to solid single-cell rna-seq high-throughput-sequencing by heliopais to the group microRNA on 2009-12-07 13:44:25 as along with 1 person GeeSharpMinor
	Computational and analytical framework for small RNA profiling by high-throughput sequencing [My Copy] RNA In RNA, Vol. 15, No. 5. (23 May 2009), pp. 992-1002. by Noah Fahlgren, Christopher M. Sullivan, Kristin D. Kasschau, et al.Elisabeth J. Chapman, Jason S. Cumbie, Taiowa A. Montgomery, Sunny D. Gilbert, Mark Dasenko, Tyler W. H. Backman, Scott A. Givan, James C. Carrington posted to small-rna microrna-plant microrna high-throughput-sequencing by heliopais to the group microRNA on 2009-12-07 13:08:26 as along with 8 people guhjy gdb samgj fenghezi sameersoi natstreet fahlgren daforerog
	The theory of discovering rare variants via DNA sequencing. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 485. by Michael C. Wendl, Richard K. Wilson posted to snp rare-variants high-throughput-sequencing by humburg on 2009-12-07 12:01:46 as along with 5 people jasontsai jsatkosk merpublic n00c druvus
	The cancer genome [My Copy] Nature In Nature, Vol. 458, No. 7239. (09 April 2009), pp. 719-724. by Michael R. Stratton, Peter J. Campbell, P. Andrew Futreal posted to high-throughput-sequencing genome cancer by heliopais on 2009-12-04 17:56:10 as along with 13 people and 1 group aviad_work jfr suizifish guhjy jessopher ilyashl frohike pkonings reyez Zephyrus rdiaz renatomilani kristen Roswell Cancer Crosstalk
	Digital PCR provides sensitive and absolute calibration for high throughput sequencing [My Copy] BMC Genomics, Vol. 10, No. 1. (19 March 2009), 116. by Richard White, Paul Blainey, H. Christina Fan, Stephen Quake posted to sample-preparation high-throughput-sequencing by heliopais on 2009-12-04 09:36:49 as along with 4 people guhjy natstreet jbhiatt druvus
	Quantification of rare allelic variants from pooled genomic DNA. [My Copy] Nature methods, Vol. 6, No. 4. (01 April 2009), pp. 263-265. by Todd E. Druley, Francesco L. Vallania, Daniel J. Wegner, et al.Katherine E. Varley, Olivia L. Knowles, Jacqueline A. Bonds, Sarah W. Robison, Scott W. Doniger, Aaron Hamvas, F. Sessions Cole, Justin C. Fay, Robi D. Mitra posted to snp pooled-data high-throughput-sequencing by humburg on 2009-12-03 12:02:03 as along with 11 people liqbbi jonilaserson n00c austin_mcdonald natstreet guhjy fenghezi giovanni psique absterga jbhiatt
	Evaluation of next generation sequencing platforms for population targeted sequencing studies. [My Copy] Genome biology, Vol. 10, No. 3. (2009), R32. by Olivier Harismendy, Pauline C. Ng, Robert L. Strausberg, et al.Xiaoyun Wang, Timothy B. Stockwell, Karen Y. Beeson, Nicholas J. Schork, Sarah S. Murray, Eric J. Topol, Samuel Levy, Kelly A. Frazer posted to targeted high-throughput-sequencing comparison by humburg on 2009-12-02 17:25:28 as along with 27 people and 2 groups dutilh heliopais jfr hzoltan dbensasson GustavoLacerda adijr agbiotec jgill darian jandot n00c jonilaserson maren inesdesantiago mlog ppgardne kiekyon michaelbarton idoerg stajich skembel giovanni druvus lwaldron djkt natstreet Journal picks Mycology
	SNP frequency estimation using massively parallel sequencing of pooled DNA [My Copy] European Journal of Human Genetics In Eur J Hum Genet, Vol. 17, No. 3. (15 October 2008), pp. 383-386. by Max Ingman, Ulf Gyllensten posted to snp pooled-data high-throughput-sequencing by humburg on 2009-12-02 15:35:27 as along with 1 person wimufi
	Quality scores and SNP detection in sequencing-by-synthesis systems [My Copy] Genome Research, Vol. 18, No. 5. (22 May 2008), pp. 763-770. by William Brockman, Pablo Alvarez, Sarah Young, et al.Manuel Garber, Georgia Giannoukos, William L. Lee, Carsten Russ, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to snp high-throughput-sequencing by humburg on 2009-12-02 15:12:47 as along with 13 people n00c jonilaserson jsatkosk maren natstreet druvus cap1 caseybrown dbensasson bpb Neeperando sharpton GustavoLacerda
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted to snp pooled-data high-throughput-sequencing by humburg on 2009-12-02 14:59:39 as along with 16 people and 3 groups hzoltan Peiyong darian seb1 heliopais mkiyer dakelley djkt PabloMarin guhjy n00c orzenil natstreet druvus stajich malcook Journal picks Mycology SIMR bioinformatics
	Model-Based Quality Assessment and Base-Calling for Second-Generation Sequencing Data [My Copy] Biometrics, Vol. 9999, No. 9999. (2009) by Héctor C. Bravo, Rafael A. Irizarry posted to quality-control high-throughput-sequencing base-calling by humburg on 2009-12-01 14:19:40 as along with 1 person n00c
	Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing [My Copy] Briefings in Bioinformatics In Brief Bioinform (27 October 2009), bbp046. by David S. Horner, Giulio Pavesi, Tiziana Castrignano, et al.Paolo D. De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole posted to review high-throughput-sequencing by heliopais on 2009-11-30 18:07:24 as along with 13 people and 1 group guhjy qm greg dullhunk michaelbarton elipapa burak torfinnnome operon wilbur kshameer renatomilani druvus Journal picks
	MOM: maximum oligonucleotide mapping [My Copy] Bioinformatics, Vol. 25, No. 7. (19 February 2009), pp. 969-970. by Hugh L. Eaves, Yuan Gao posted to read-mapping high-throughput-sequencing by heliopais on 2009-11-30 17:49:52 as along with 9 people Julien_Fayolle seb1 jfr n00c cassj rschulz mmartin guhjy druvus
	PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (19 August 2009), pp. 2514-2521. by Yangho Chen, Tade Souaiaia, Ting Chen posted to read-mapping high-throughput-sequencing by heliopais on 2009-11-30 17:46:45 as along with 10 people and 1 group Julien_Fayolle darian dswan operon fishtank polivares n00c torfinnnome druvus natstreet BergmanLab
	Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity [My Copy] Nucleic Acids Research, Vol. 37, No. 15. (1 August 2009), e104. by Nicolas Philippe, Anthony Boureux, Laurent Brehelin, Jorma Tarhio, Therese Commes, Eric Rivals posted to high-throughput-sequencing error-correction by heliopais on 2009-11-30 17:07:30 as along with 7 people manduca fstrozzi sotacam inesdesantiago jmcq guhjy xwbcn
	Substantial biases in ultra-short read data sets from high-throughput DNA sequencing [My Copy] Nucleic Acids Research, Vol. 36, No. 16. (1 September 2008), e105. by Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer posted to high-throughput-sequencing benchmark by heliopais on 2009-11-27 10:02:40 as along with 20 people and 1 group darian hzoltan jonilaserson n00c druvus orzenil burak woodson8 sameersoi humburg poschm polivares Huub_odc usagi-kirin inesdesantiago jfr natstreet dakelley caseybrown GustavoLacerda microbiology_nijmegen
	SHREC: a short-read error correction method [My Copy] Bioinformatics, Vol. 25, No. 17. (19 June 2009), pp. 2157-2163. by Jan Schroder, Heiko Schroder, Simon J. Puglisi, Ranjan Sinha, Bertil Schmidt posted to shrec read-mapping high-throughput-sequencing error-correction by heliopais on 2009-11-26 13:31:06 as along with 13 people and 1 group adthrasher dakelley skembel thegoose katholt sotacam djkt rtogawa torfinnnome natstreet druvus n00c jmeppley Journal picks
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to read-mapping high-throughput-sequencing by heliopais on 2009-11-19 15:33:40 as along with 38 people and 2 groups seninp hzoltan cthachuk darshan adijr darian bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing. [My Copy] Genome research, Vol. 19, No. 7. (4 July 2009), pp. 1309-1315. by Wei Qu, Shin-ichi Hashimoto, Shinichi Morishita posted to high-throughput-sequencing error-correction by heliopais on 2009-11-19 15:28:07 as along with 9 people mpizbioinfo druvus n00c megraw nlapalu dakelley djkt operon natstreet
	BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing [My Copy] Genome Research, Vol. 19, No. 10. (6 October 2009), pp. 1884-1895. by Wei-Chun Kao, Kristian Stevens, Yun S. Song posted to high-throughput-sequencing base-calling by heliopais on 2009-11-19 15:23:38 as along with 13 people and 2 groups dakelley lp2 megraw rdiaz torfinnnome djkt n00c farhat druvus polivares stajich fpattyn jbhiatt BergmanLab Mycology
	BreakDancer: an algorithm for high-resolution mapping of genomic structural variation [My Copy] Nature Methods, Vol. 6, No. 9. (09 August 2009), pp. 677-681. by Ken Chen, John W. Wallis, Michael D. McLellan, et al.David E. Larson, Joelle M. Kalicki, Craig S. Pohl, Sean D. McGrath, Michael C. Wendl, Qunyuan Zhang, Devin P. Locke, Xiaoqi Shi, Robert S. Fulton, Timothy J. Ley, Richard K. Wilson, Li Ding, Elaine R. Mardis posted to read-mapping high-throughput-sequencing by heliopais on 2009-11-19 15:00:57 as along with 13 people and 1 group n00c Leaflet stubrown dakelley fenghezi daed natstreet druvus sitalange qayub gdb jasontsai danmaclean Journal picks
	TileQC: a system for tile-based quality control of Solexa data. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (28 May 2008), 250. by Peter Dolan, Dee Denver posted to solexa quality_control_system high-throughput-sequencing by heliopais on 2009-11-19 13:55:39 as along with 7 people n00c magusina neils reyez mdimon slevy03 caseybrown
	SHRiMP: Accurate Mapping of Short Color-space Reads [My Copy] PLoS Computational Biology, Vol. 5, No. 5. (22 May 2009), e1000386. by Stephen M. Rumble, Phil Lacroute, Adrian V. Dalca, Marc Fiume, Arend Sidow, Michael Brudno posted to shrimp read-mapping high-throughput-sequencing by heliopais on 2009-11-19 13:50:04 as along with 22 people and 4 groups jfr cthachuk hzoltan bozdagd ilanc burak guhjy djkt trfield n00c natstreet adijr druvus Stew farhat humburg kshameer operon stajich GeeSharpMinor AlexBateman barry Bioinformatics - CRUK Mycology Journal picks Bioinformatics
	edgeR: a Bioconductor package for differential expression analysis of digital gene expression data [My Copy] Bioinformatics (11 November 2009), btp616. by Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth posted to high-throughput-sequencing edger differential_expression by heliopais on 2009-11-19 13:47:01 as along with 2 people hzoltan druvus
	Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach [My Copy] BMC Genomics, Vol. 10, No. 1. (5 November 2009), 512. by Ying Wang, Vinayak Brahmakshatriya, Huifeng Zhu, et al.Blanca Lupiani, Sanjay Reddy, Byung J. Yoon, Preethi Gunaratne, Jong Kim, Rui Chen, Junjun Wang, Huaijun Zhou posted to hts-application high-throughput-sequencing by heliopais to the group microRNA on 2009-11-19 13:06:17 as along with 1 person samgj
	The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs. [My Copy] Nature reviews. Genetics, Vol. 10, No. 12. (01 December 2009), pp. 833-844. by Alain Jacquier posted to review high-throughput-sequencing by heliopais on 2009-11-19 12:55:17 as along with 5 people and 1 group GeeSharpMinor gjuggler frohike qayub megraw Journal picks
	The challenges of sequencing by synthesis [My Copy] Nature Biotechnology In Nat Biotech, Vol. 27, No. 11. (06 November 2009), pp. 1013-1023. by Carl W. Fuller, Lyle R. Middendorf, Steven A. Benner, et al.George M. Church, Timothy Harris, Xiaohua Huang, Stevan B. Jovanovich, John R. Nelson, Jeffery A. Schloss, David C. Schwartz, Dmitri V. Vezenov posted to review high-throughput-sequencing by heliopais on 2009-11-19 12:31:47 as along with 6 people alexknight viren4388 JonD brianb chvlyl seb1
	A novel class of small RNAs: tRNA-derived RNA fragments (tRFs) [My Copy] Genes and Development In Genes & Development, Vol. 23, No. 22. (15 November 2009), pp. 2639-2649. by Yong S. Lee, Yoshiyuki Shibata, Ankit Malhotra, Anindya Dutta posted to trna small-rna high-throughput-sequencing by heliopais on 2009-11-19 09:54:08 as along with 2 people and 1 group hrogers ppgardne Journal picks
	How to map billions of short reads onto genomes [My Copy] Nature Biotechnology, Vol. 27, No. 5. (01 May 2009), pp. 455-457. by Cole Trapnell, Steven L. Salzberg posted to review read-mapping high-throughput-sequencing by heliopais on 2009-11-11 09:16:30 as along with 30 people and 5 groups agbiotec burak cthachuk hzoltan tonamswish giovenko jfr torfinnnome daforerog jonilaserson mkiyer Annab darian polivares ghattem kiekyon n00c GeeSharpMinor guhjy nuin reyez orzenil Thaverkamp natstreet druvus fenghezi Stew inesdesantiago idonaldson neils Bioinformatics Chinnaiyan Lab BergmanLab SIMR bioinformatics Bioinformatics - CRUK
	Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays [My Copy] Science (5 November 2009), 1181498. by Radoje Drmanac, Andrew B. Sparks, Matthew J. Callow, et al.Aaron L. Halpern, Norman L. Burns, Bahram G. Kermani, Paolo Carnevali, Igor Nazarenko, Geoffrey B. Nilsen, George Yeung, Fredrik Dahl, Andres Fernandez, Bryan Staker, Krishna P. Pant, Jonathan Baccash, Adam P. Borcherding, Anushka Brownley, Ryan Cedeno, Linsu Chen, Dan Chernikoff, Alex Cheung, Razvan Chirita, Benjamin Curson, Jessica C. Ebert, Coleen R. Hacker, Robert Hartlage, Brian Hauser, Steve Huang, Yuan Jiang, Vitali Karpinchyk, Mark Koenig, Calvin Kong, Tom Landers, Catherine Le, Jia Liu, Celeste E. McBride, Matt Morenzoni, Robert E. Morey, Karl Mutch, Helena Perazich, Kimberly Perry, Brock A. Peters, Joe Peterson, Charit L. Pethiyagoda, Kaliprasad Pothuraju, Claudia Richter, Abraham M. Rosenbaum, Shaunak Roy, Jay Shafto, Uladzislau Sharanhovich, Karen W. Shannon, Conrad G. Sheppy, Michel Sun, Joseph V. Thakuria, Anne Tran, Dylan Vu, Alexander W. Zaranek, Xiaodi Wu, Snezana Drmanac, Arnold R. Oliphant, William C. Banyai, Bruce Martin, Dennis G. Ballinger, George M. Church, Clifford A. Reid posted to sequencing_technologies high-throughput-sequencing by heliopais on 2009-11-09 17:30:26 as along with 13 people and 1 group dakelley JonD qayub sandfire daforerog Peiyong chvlyl JamesBarger natstreet rwst orzenil zufar frohike Journal picks
	Sequence biases in large scale gene expression profiling data [My Copy] Nucleic Acids Research, Vol. 34, No. 12. (13 July 2006), e83. by Asim S. Siddiqui, Allen D. Delaney, Angelique Schnerch, Obi L. Griffith, Steven J. M. Jones, Marco A. Marra posted to normalization high-throughput-sequencing by heliopais on 2009-11-09 17:26:03 as along with 1 person jfr
	MicroRNA Discovery and Profiling in Human Embryonic Stem Cells by Deep Sequencing of Small RNA Libraries [My Copy] Stem Cells, Vol. 26, No. 10. (1 October 2008), pp. 2496-2505. by Merav Bar, Stacia K. Wyman, Brian R. Fritz, et al.Junlin Qi, Kavita S. Garg, Rachael K. Parkin, Evan M. Kroh, Ausra Bendoraite, Patrick S. Mitchell, Angelique M. Nelson, Walter L. Ruzzo, Carol Ware, Jerald P. Radich, Robert Gentleman, Hannele Ruohola-Baker, Muneesh Tewari posted to microrna high-throughput-sequencing by heliopais on 2009-11-09 15:27:28 as along with 5 people and 1 group tonamswish ealloza valeriehilgers myzhang inesdesantiago microRNA
	A novel approach to detect differentially expressed genes from count-based digital databases by normalizing with housekeeping genes [My Copy] Genomics, Vol. 94, No. 3. (13 September 2009), pp. 211-216. by Bingjian Lü, Jiyang Yu, Jing Xu, Jian Chen, Maode Lai posted to high-throughput-sequencing differential_expression by heliopais on 2009-11-09 14:37:39 as along with 1 person taylor73
	The Significance of Digital Gene Expression Profiles [My Copy] Genome Research, Vol. 7, No. 10. (1 October 1997), pp. 986-995. by Stephane Audic, Jean-Michel Claverie posted to high-throughput-sequencing differential_expression by heliopais on 2009-11-09 10:01:04 as along with 5 people cajunsushi jmeppley dandaman fhalbrit gpappas
	Ultrafast and memory-efficient alignment of short DNA sequences to the human genome [My Copy] Genome Biology, Vol. 10, No. 3. (2009), R25. by Ben Langmead, Cole Trapnell, Mihai Pop, Steven Salzberg posted to high-throughput-sequencing by fstrozzi on 2009-11-06 11:12:38 as along with 38 people and 4 groups mijam nuin jfr hzoltan cthachuk darshan adijr debasis bozdagd polivares torfinnnome n00c talponer jmcq rschulz ghattem operon humburg idonaldson mmartin skembel dquest heliopais djkt GeeSharpMinor bertelsen darian semrich dakelley idoerg vmsr hpaces admash pdexheimer mhamada fpattyn natstreet druvus BergmanLab SIMR bioinformatics iSEEM Notre Dame Bioinformatics
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to rna-seq high-throughput-sequencing benchmark by heliopais on 2009-11-03 17:02:48 as along with 48 people and 3 groups AndersI zufar cthachuk hzoltan jwfoley debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda CPI UU SIMR bioinformatics Mycology
	Novel software package for cross-platform transcriptome analysis (CPTRA) [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 11. (8 October 2009), S16. by Xin Zhou, Zhen Su, R. Douglas Sammons, et al.Yanhui Peng, Patrick Tranel, C. Neal Stewart, Joshua Yuan posted to software high-throughput-sequencing by heliopais on 2009-11-03 16:57:57 as along with 1 person GeeSharpMinor
	mRNA-Seq whole-transcriptome analysis of a single cell [My Copy] Nature Methods, Vol. 6, No. 5. (06 April 2009), pp. 377-382. by Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, et al.Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B. Tuch, Asim Siddiqui, Kaiqin Lao, M. Azim Surani posted to single-cell rna-seq high-throughput-sequencing by heliopais on 2009-11-03 16:50:34 as along with 16 people hzoltan jfr inesdesantiago manduca debasis Vincent_Rouilly mtagaya woodson8 gdb guhjy kintoki fenghezi absterga jbhiatt pengchy sleepingcell
	Is sequencing enlightenment ending the dark age of the transcriptome? [My Copy] Nature Methods, Vol. 6, No. 10. (01 October 2009), pp. 711-713. by Piero Carninci posted to review high-throughput-sequencing by heliopais on 2009-11-03 16:47:30 as along with 5 people inesdesantiago n00c druvus megraw maren
	Next-generation gap [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S2-S5. by John D. McPherson posted to review high-throughput-sequencing by heliopais on 2009-11-03 16:44:16 as along with 9 people n00c pst owenlancaster torfinnnome Vincent_Rouilly seb1 idoerg oannes74 GeeSharpMinor
	Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing [My Copy] BMC Genomics, Vol. 10, No. 1. (12 June 2009), 264. by Shrinivasrao Mane, Clive Evans, Kristal Cooper, et al.Oswald Crasta, Otto Folkerts, Stephen Hutchison, Timothy Harkins, Danielle T. Mieg, Jean T. Mieg, Roderick Jensen posted to microrarray high-throughput-sequencing benchmark 454 by heliopais on 2009-11-03 16:41:23 as along with 5 people daforerog GeeSharpMinor guhjy natstreet fenghezi
	Transcript quantification with RNA-Seq data [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 13. (19 October 2009), P5. by Regina Bohnert, Jonas Behr, Gunnar Ratsch posted to transcript-quantification rna-seq high-throughput-sequencing by heliopais on 2009-11-03 16:28:49 as along with 3 people hzoltan jwfoley inesdesantiago
	RNA-Seq—quantitative measurement of expression through massively parallel RNA-sequencing [My Copy] Methods, Vol. 48, No. 3. (29 March 2009), pp. 249-257. by Brian T. Wilhelm, Josette-Renée R. Landry posted to review high-throughput-sequencing by heliopais on 2009-11-03 15:42:12 as along with 11 people darian hzoltan manduca inesdesantiago orzenil n00c woodson8 guhjy tonamswish fenghezi GeeSharpMinor
	Statistical inferences for isoform expression in RNA-Seq [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1026-1032. by Hui Jiang, Wing H. Wong posted to rma-seq isoforms high-throughput-sequencing differential_expression by heliopais on 2009-11-03 15:30:37 as along with 16 people and 2 groups jwfoley hzoltan stubrown GustavoLacerda woodson8 ThomasDOtto stajich guhjy ghattem djkt shikin pengchy vplagnol rschulz jmcq GeeSharpMinor Mycology SIMR bioinformatics
	Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays [My Copy] BMC Genomics, Vol. 10, No. 1. (12 May 2009), 221. by Joshua Bloom, Zia Khan, Leonid Kruglyak, Mona Singh, Amy Caudy posted to microarray high-throughput-sequencing benchmark by heliopais on 2009-11-03 15:20:05 as along with 9 people and 1 group hzoltan GustavoLacerda GeeSharpMinor n00c TRHvidsten natstreet druvus dswan neils Bioinformatics

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microrna	28
review	22
chip-seq	18
read-mapping	16
chromatin-structure	10
short-read-mapping	10
algorithm	8
snp	7
differential_expression	6
nucleosomes	6
tf	6
barcodes	5
human	5
rna-seq	5
solexa	5
benchmark	4
cancer	4
error-correction	4
sequence-alignment	4
454	3
barcode_design	3
chicken_microrna	3
chip-chip	3
isomir	3
microrna_gene_finding	3
pooled-data	3
single-cell	3
small-rna	3
software	3
solid	3
tool	3
analysis	2
base-calling	2
hmm	2
hts-application	2
let-7	2
microrna-plant	2
microrna_microarray	2
microrna_profiling	2
mrna-profiling	2
normalization	2
quality-control	2
tiling-array	2
worm	2
argonaute	1
clustering	1
comparison	1
cow	1
dgcr8	1
dicer	1
dicer-knockout	1
digital_gene_expression	1
dnasudoku	1
drosha	1
edger	1
evolution	1
fly	1
genome	1
immunoprecipitation	1
isoforms	1
microarray	1
microrarray	1
microrna-offset	1
mir-17	1
mir-92	1
mirexpress	1
mirna	1
mouse	1
nanopore-sequencing	1
next-gen-sequencing	1
parallel-computing	1
pig	1
pipeline	1
pirna	1
planarians	1
quality_control_system	1
rare-variants	1
rma-seq	1
sample-preparation	1
sequence-visualization	1
sequencing-error	1
sequencing_technologies	1
shrec	1
shrimp	1
swift	1
synthetic-sample	1
targeted	1
transcript-quantification	1
trna	1
visualisation	1
yeast	1
zebrafish	1

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