Tag hmm [at least 200 articles] Export

Recent papers classified by the tag hmm.

	Continuous speech recognition [My Copy] Signal Processing Magazine, IEEE, Vol. 12, No. 3. (06 August 2002), pp. 24-42. by N. Morgan, H. Bourlard posted to speechrecognition neuralnet hmm by asterix77 on 2009-11-09 15:25:00 as
	Entropy sensitivity of languages defined by infinite automata, via Markov chains with forbidden transitions [My Copy] (1 Nov 2009) by Wilfried Huss, Ecaterina Sava, Wolfgang Woess posted to language hmm entropy automaton by ansobol on 2009-11-03 15:13:29 as
	CisModule: De novo discovery of cis-regulatory modules by hierarchical mixture modeling [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 33. (17 August 2004), pp. 12114-12119. by Qing Zhou, Wing H. Wong posted to tool tf hmm crm bioinfo by tonamswish on 2009-10-30 14:00:29 as along with 4 people and 1 group isimpson indigoviolet dpollard ep161302 EisenLab
	Model-based clustering of array CGH data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i30-38. by Sohrab P. Shah, K-John Cheung, Nathalie A. Johnson, et al.Guillaume Alain, Randy D. Gascoyne, Douglas E. Horsman, Raymond T. Ng, Kevin P. Murphy posted to model hmm clustering cancer array_cgh by jonilaserson on 2009-10-29 03:52:43 as along with 4 people dolchan rdiaz kdpreter nuin
	Recognising and Monitoring High-Level Behaviours in Complex Spatial Environments [My Copy] Computer Vision and Pattern Recognition, IEEE Computer Society Conference on, Vol. 2 (2003), 620. by Nam T. Nguyen, Hung H. Bui, Svetha Venkatesh, Geoff West posted to surveillance-systems situation-recognition probabilistic hmm by alexander_bauer on 2009-10-28 13:21:04 as
	Computation-Based Discovery of Cis-Regulatory Modules by Hidden Markov Model. [My Copy] J Comput Biol (11 March 2008) by Jing Wu, Jun Xie posted to in_silico hmm crm cis-regulatory_element by daveGerrard on 2009-10-27 15:53:00 as along with 5 people and 1 group isimpson maximilianh cisevol csdhwang pradiptaray BergmanLab
	On approximation of smoothing probabilities for hidden Markov models [My Copy] (24 Oct 2009) by J. Lember posted to hmm by ansobol on 2009-10-27 13:11:58 as
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to tool hmm chip-seq bioinfo bayesian by tonamswish to the group Bioinformatics on 2009-10-27 13:08:34 as along with 10 people and 3 groups dswan fenghezi inesdesantiago idonaldson polivares mkiyer druvus stajich humburg rschulz JLab BergmanLab Mycology
	An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome [My Copy] PLoS ONE, Vol. 4, No. 5. (12 May 2009), e5501. by Kyoung-Jae Won, Saurabh Agarwal, Li Shen, Robert Shoemaker, Bing Ren, Wei Wang posted to tool tf hmm chip-seq bioinfo by tonamswish on 2009-10-27 03:01:09 as along with 3 people and 1 group guhjy idonaldson cisevol BergmanLab
	Profile Comparer: a program for scoring and aligning profile hidden Markov models [My Copy] Bioinformatics, Vol. 24, No. 22. (15 November 2008), pp. 2630-2631. by Martin Madera posted to tool profile_hmm hmm bioinfo by tonamswish on 2009-10-27 02:31:05 as along with 3 people and 1 group j3xucite djkt nuin iSEEM
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted to hmm chip-seq chip-chip bioinfo by tonamswish on 2009-10-27 02:15:59 as along with 11 people and 1 group rdiaz fpattyn jcbarret guhjy hendrik85 inesdesantiago nklee polivares ewilban1 idonaldson humburg Journal picks
	Multiple testing in genome-wide association studies via hidden Markov models [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2802-2808. by Zhi Wei, Wenguang Sun, Kai Wang, Hakon Hakonarson posted to testing snps mtp hmm association by djkt on 2009-10-23 23:54:18 as along with 6 people and 1 group ppgardne WJWilson rdiaz pkonings jmeppley guhjy Journal picks
	Finding words in alphabet soup: Inference on freeform character recognition for historical scripts [My Copy] Pattern Recognition (20 January 2009) by N. Howe, S. Feng, R. Manmatha posted to hmm historical gradient-histogram ancient by angieG on 2009-10-20 18:45:33 as along with 2 people AlisonBabeu zimbo1
	A complete solution to Blackwell's unique ergodicity problem for hidden Markov chains [My Copy] (19 Oct 2009) by Pavel Chigansky, Ramon van Handel posted to hmm blackwell by ansobol on 2009-10-20 16:21:18 as
	Significant speedup of database searches with HMMs by search space reduction with PSSM family models. [My Copy] Bioinformatics (Oxford, England) (14 October 2009), btp593. by Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz posted to pssm phmm hmm database data-mining analysis algorithm by kshameer on 2009-10-20 12:45:33 as along with 2 people operon druvus
	Riboswitch detection using profile Hidden Markov Models [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (08 October 2009), 325. by Payal Singh, Pradipta Bandyopadhyay, Sudha Bhattacharya, A. Krishnamachari, Supratim Sengupta posted to rnaworld noncoding_rna noncoding hmm by stajich to the group Mycology on 2009-10-16 11:11:04 as along with 1 person reyez
	Beam sampling for the infinite hidden Markov model [My Copy] In ICML '08: Proceedings of the 25th international conference on Machine learning (2008), pp. 1088-1095. by Jurgen Van Gael, Yunus Saatci, Yee W. Teh, Zoubin Ghahramani posted to pos-tagger hmm by kwoodsend on 2009-10-15 13:11:24 as
	Towards a mathematical theory of cortical micro-circuits. [My Copy] PLoS computational biology, Vol. 5, No. 10. (9 October 2009), e1000532. by Dileep George, Jeff Hawkins posted to shmm hmm hierarchic belief_propagation by matjes on 2009-10-15 12:50:27 as along with 6 people braskob meduz josepe watson flieder BBoyButzemann
	HMMCONVERTER 1.0: a toolbox for hidden Markov models [My Copy] Nucl. Acids Res. (8 September 2009), gkp662. by Tin Y. Lam, Irmtraud M. Meyer posted to hmm by maximilianh on 2009-10-14 14:56:37 as along with 2 people and 3 groups polivares ppgardne JLab BergmanLab Journal picks
	A tutorial on hidden Markov models and selected applications in speech recognition [My Copy] Proceedings of the IEEE In Proceedings of the IEEE, Vol. 77, No. 2. (06 August 2002), pp. 257-286. by L. R. Rabiner posted to hmm asr by bklynbam on 2009-10-13 16:50:39 as along with 53 people and 8 groups amoreno ianhales pascanur mtecha roys wasteland93 tkollar matjes mthomure hawkes db344 ashleygeorge rodri mhp0814 yonatanf gkoenig muraken robotact albert_swart gulkur sergut ppeeling alexr pcahan1 mdhussein mcastillo daveh neveaire pool007 gonza_bp takahi jford neilc pratap bcroy tkravitz dominikschmidt sancho Alice2Nice zeppe karthik_ravikanti poluxmoon sachina maxp tgyork asterix77 yangxian ulmer julianpan rlichten wenhan huangsong tdahl searchingspeech2010 MiGen Project Autoregulation Biostatistics Computational-Genomics Bioinformatics Neuroscience MAML
	Integrating topics and syntax [My Copy] In In Advances in Neural Information Processing Systems 17, Vol. 17 (2005), pp. 537-544. by Thomas L. Griffiths, Mark Steyvers, David M. Blei, Joshua B. Tenenbaum posted to topic syntax hmm by almadana on 2009-10-13 16:16:03 as along with 1 person mehrbod
	Identification of genes involved in the same pathways using a Hidden Markov Model-based approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2945-2954. by Alexander Senf, Xue-wen Chen posted to pathway missing miranda microarray hmm gene by ptrobajo on 2009-10-12 13:24:11 as along with 1 person TRHvidsten
	HMM-based databases in InterPro [My Copy] Brief Bioinform, Vol. 3, No. 3. (1 January 2002), pp. 236-245. by Alex Bateman, Daniel H. Haft posted to signature protein pattern motif interproscan hmm domain database databank bank annotation by nlapalu on 2009-10-09 16:46:40 as
	Recurrent copy number alterations in BRCA1-mutated ovarian tumors alter biological pathways. [My Copy] Human mutation (2 October 2009) by Karin Leunen, Olivier Gevaert, Anneleen Daemen, et al.Vanessa Vanspauwen, Geneviève Michils, Bart De Moor, Philippe Moerman, Ignace Vergote, Eric Legius posted to recurrent method hmm example cnv acgh by rdiaz on 2009-10-09 10:06:13 as along with 1 person frohike
	Markov Chains With Measurement Error: Estimating the `True' Course of a Marker of the Progression of Human Immunodeficiency Virus Disease [My Copy] Applied Statistics, Vol. 45, No. 3. (1996), 275. by Glen A. Satten, Ira M. Longini posted to hmm disease_progression by MRCBIRD on 2009-10-08 08:39:20 as
	Modeling Markers of Disease Progression by a Hidden Markov Process: Application to Characterizing CD4 Cell Decline [My Copy] Biometrics, Vol. 56, No. 3. (2000), pp. 733-741. by Chantal G. Jouyaux, Sylvia Richardson, Jr posted to hmm disease_progression by MRCBIRD on 2009-10-08 08:36:15 as
	Asymptotic and numerical homogenization [My Copy] Acta Numerica, Vol. 17, No. -1. (2008), pp. 147-190. by B. Engquist, P. E. Souganidis posted to homogenization hmm by alm on 2009-10-07 20:18:13 as along with 1 person jenda_z
	The heterogeneous multiscale finite element method for elliptic homogenization problems in perforated domains [My Copy] Numerische Mathematik, Vol. 113, No. 4. (1 October 2009), pp. 601-629. by Patrick Henning, Mario Ohlberger posted to hmm by alm on 2009-10-07 18:56:44 as
	Reduced-Rank Hidden Markov Models [My Copy] (6 Oct 2009) by Sajid M. Siddiqi, Byron Boots, Geoffrey J. Gordon posted to matrix hmm by ansobol on 2009-10-07 07:49:57 as
	Markov Chain Order Estimation and Relative Entropy [My Copy] (1 Oct 2009) by A. R. Baigorri, C. R. Goncalves, P. A. A. Resende posted to markov hmm entropy by ansobol on 2009-10-05 13:00:26 as along with 1 person dah
	Signal Processing Challenges for Neural Prostheses [My Copy] Signal Processing Magazine, IEEE In Signal Processing Magazine, IEEE, Vol. 25, No. 1. (26 December 2007), pp. 18-28. by M. D. Linderman, G. Santhanam, C. T. Kemere, et al.V. Gilja, S. O'Driscoll, B. M. Yu, A. Afshar, S. I. Ryu, K. V. Shenoy, T. H. Meng posted to spike-sorting neuroscience hmm by bklynbam on 2009-09-29 15:33:27 as along with 1 person ezaydens
	A Latent Class Model with Hidden Markov Dependence for Array CGH Data. [My Copy] Biometrics, Vol. 9999, No. 9999. (7 April 2009) by Stacia M. Desantis, E. Andrés Houseman, Brent A. Coull, David N. Louis, Gayatry Mohapatra, Rebecca A. Betensky posted to hmm cnv classification cgh acgh by rdiaz on 2009-09-28 17:26:48 as along with 1 person kdpreter
	Clustering Variable Length Sequences by Eigenvector Decomposition Using HMM [My Copy] Structural, Syntactic, and Statistical Pattern Recognition (2004), pp. 352-360. by Fatih Porikli posted to hmm clustering by dakelley on 2009-09-28 01:08:43 as
	HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins1 [My Copy] Journal of Molecular Biology, Vol. 301, No. 1. (04 August 2000), pp. 173-190. by Christopher Bystroff, Vesteinn Thorsson, David Baker posted to structural_bioinformatics hmm by jwm on 2009-09-26 16:18:35 as along with 5 people and 1 group wouterboomsma j3xucite dgront rabio wenhan MBLAB
	An introduction to hidden Markov models [My Copy] ASSP Magazine, IEEE, Vol. 3, No. 1. (22 April 2003), pp. 4-16. by L. Rabiner, B. Juang posted to hmm background by sinantumen on 2009-09-25 22:32:57 as along with 6 people and 1 group amoreno rockelegancy Lasse mcastillo dominikschmidt peterhearty searchingspeech2010
	Similarity-Based Clustering of Sequences Using Hidden Markov Models [My Copy] In Machine Learning and Data Mining in Pattern Recognition, vol. LNAI 2734 (2003), pp. 86-95. by Manuele Bicego, Vittorio Murino, Mario A. T. Figueiredo posted to hmm clustering by dakelley on 2009-09-23 22:27:57 as
	G.: Clustering sequence data using hidden Markov model representation [My Copy] In In: Proc. of SPIE’99 Conf. on Data Mining and Knowledge Discovery: Theory (1999), pp. 14-21. by Cen Li, Gautam Biswas posted to hmm clustering by dakelley on 2009-09-23 22:27:43 as
	A Hidden Markov Model-based approach to sequential data clustering [My Copy] Vol. 2396 (2002), pp. 734-742. by Antonello Panuccio, Manuele Bicego, Vittorio Murino posted to hmm clustering by dakelley on 2009-09-23 22:27:12 as
	HMM clustering for connected word recognition [My Copy] Acoustics, Speech, and Signal Processing, 1989. ICASSP-89., 1989 International Conference on (06 August 1989), pp. 405-408 vol.1. by L. R. Rabiner, C. H. Lee, B. H. Juang, J. G. Wilpon posted to hmm clustering by dakelley on 2009-09-23 22:26:37 as
	Clustering Sequences with Hidden Markov Models [My Copy] In Advances in Neural Information Processing Systems, Vol. 9 (1997), pp. 648-654. by Padhraic Smyth posted to hmm clustering by dakelley on 2009-09-23 22:25:53 as along with 3 people jrodriguez donade ChaTo
	Constrained mixture estimation for analysis and robust classification of clinical time series [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i6-14. by Ivan G. Costa, Alexander Schonhuth, Christoph Hafemeister, Alexander Schliep posted to time_series mixture hmm classification by rdiaz on 2009-09-23 16:41:13 as along with 1 person sotacam
	HMM Logos for visualization of protein families. [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (21 January 2004), 7. by B. Schuster-Böckler, J. Schultz, S. Rahmann posted to programs hmm by BioNica on 2009-09-22 23:51:36 as along with 2 people analogAI pansapiens
	TnT -- a statistical part-of-speech tagger [My Copy] (2000) by T. Brants posted to tnt pos part_of_speech nlp markov_models hmm by kvorg to the group NLP on 2009-09-22 11:42:18 as along with 1 person halacsy
	Relative Entropy Rate Based on Multiple Hidden Markov Model Approximation [My Copy] Signal Processing, IEEE Transactions on, Vol. PP, No. 99. (21 July 2009), pp. 1-1. by J. Lai, J. J. Ford posted to rer model-set_design hmm dim-target-detection by mtecha on 2009-09-22 09:57:01 as along with 1 person jford
	Coarse-to-Fine Dynamic Programming [My Copy] IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. 23, No. 12. (2001), pp. 1379-1390. by C. Raphael posted to probabilistic hmm graphicalmodels dynamic_programming compbio by akshayk on 2009-09-21 07:13:32 as
	Joint estimation of gene conversion rates and mean conversion tract lengths from population SNP data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i231-239. by Junming Yin, Michael I. Jordan, Yun S. Song posted to song snp probabilistic hmm graphicalmodels compbio bioinformatics berkeley by akshayk on 2009-09-21 07:07:01 as along with 3 people and 1 group AlexBateman djkt sameersoi Journal picks
	Pfam: A comprehensive database of protein domain families based on seed alignments [My Copy] Proteins: Structure, Function, and Genetics, Vol. 28, No. 3. (1997), pp. 405-420. by E. L. L. Sonnhammer, S. R. Eddy, R. Durbin posted to method hmm database bioinformatics by BioNica on 2009-09-19 19:41:20 as
	A Discriminative Framework for Detecting Remote Protein Homologies [My Copy] Journal of Computational Biology, Vol. 7, No. 1-2. (February 2000), pp. 95-114. by Tommi Jaakkola, Mark Diekhans, David Haussler posted to svm protein-classification hmm comparative-sequence-analysis by stharward on 2009-09-18 19:57:32 as along with 1 person schulz
	Recognizing names in biomedical texts: a machine learning approach. [My Copy] Bioinformatics (Oxford, England), Vol. 20, No. 7. (1 May 2004), pp. 1178-1190. by GuoDong Zhou, Jie Zhang, Jian Su, Dan Shen, ChewLim Tan posted to named-entity-recognition machine-learning k_nearest_neighbor hmm biomedical by henk-cul to the group dbmi-nlp on 2009-09-16 20:06:34 as along with 4 people and 2 groups svozil arafalov irenas farzanehs Bioinformatics dbk-lab
	Improved maritime target tracker using colour fusion [My Copy] High Performance Computing & Simulation, 2009. HPCS '09. International Conference on (07 August 2009), pp. 230-236. by P. Westall, P. O'Shea, J. J. Ford, S. Hrabar posted to own-c own hmm by jford on 2009-09-14 12:46:05 as

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bioinformatics	43
markov	41
protein	26
model	24
recognition	24
bayesian	22
p-fb	22
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alignment	18
cnv	18
sequence	17
statistics	17
chip-seq	16
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review	12
structure	12
tutorial	12
accelerometer	11
own	11
speech	11
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language	9
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tf	6
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phylogenetics	5
probability	5
proteome	5
read	5
security	5
som	5
time_series	5
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