Tag homology [at least 200 articles] Export

Recent papers classified by the tag homology.

	Genetic stability and linkage analysis of the 2009 influenza A(H1N1) virus based on sequence homology [My Copy] Archives of Virology by Jun Lu, Dabin Liu, Wei Liu, Taoxing Shi, Yigang Tong, Wuchun Cao posted to influenza homology by zwang on 2009-11-10 10:32:22 as
	Protein phylogenies provide evidence of a radical discontinuity between arthropod and vertebrate immune systems [My Copy] Immunogenetics, Vol. 47, No. 4. (16 February 1998), pp. 283-296. by A. L. Hughes posted to vertebrate phylogeny immune homology evolution arthropod adaptve_immune_system adaptive_immune_system by tomhebbron on 2009-11-03 15:18:22 as
	Primordial emergence of the recombination activating gene 1 (RAG1): sequence of the complete shark gene indicates homology to microbial integrases [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 18. (3 September 1996), pp. 9454-9459. by R. M. Bernstein, S. F. Schluter, H. Bernstein, J. J. Marchalonis posted to rag origin homology gnathostomes evolution big_bang adaptive_immune_system by tomhebbron on 2009-11-03 12:43:14 as
	An assessment of the uses of homologous interactions [My Copy] Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 689-695. by Ramazan Saeed, Charlotte Deane posted to networks linkprediction homology by carlk on 2009-10-24 00:00:25 as along with 11 people snow_dragon lawraga winterschlaefer chad_davis grahamc cjeans laughcry mingzhi cdeane Pao-Yang samesense
	The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology [My Copy] Mol. BioSyst., Vol. 4, No. 5. (May 2008), pp. 363-371. by Peter F. Hallin, Tim T. Binnewies, David W. Ussery posted to visualisation homology genome blast by druvus on 2009-10-21 08:54:15 as along with 1 person guhjy
	The fungus Ustilago maydis and humans share disease-related proteins that are not found in Saccharomyces cerevisiae [My Copy] BMC Genomics, Vol. 8, No. 1. (20 December 2007), 473. by Martin Munsterkotter, Gero Steinberg posted to ustilago proteome model_system maydis homology homologue comparative_analysis by nlapalu on 2009-10-14 15:16:38 as along with 3 people and 1 group stajich GustavoLacerda seitentaisei Mycology
	Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (21 August 2009), e1000475. by Joost Van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau, Joost Schymkowitz posted to substrate_recognition sep09 protein plos motif homology dnak binding by klexa on 2009-10-07 14:07:50 as along with 2 people pansapiens biomcgary
	PatternHunter: faster and more sensitive homology search [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 440-445. by Bin Ma, John Tromp, Ming Li posted to synteny homology genome by druvus on 2009-10-06 15:42:15 as along with 10 people maria_hauser mmartin umit nuke2005 catmat treangen natstreet nedwards DickSilver bozdagd
	LIBRUS: Combined Machine Learning and Homology Information for Sequence-based Ligand-Binding Residue Prediction [My Copy] Bioinformatics (28 September 2009), btp561. by Chris Kauffman, George Karypis posted to sequence prediction machine-learning ligand homology binding by neils on 2009-09-30 00:52:38 as
	Dynamic programming alignment accuracy [My Copy] In RECOMB '98: Proceedings of the second annual international conference on Computational molecular biology (1998), pp. 102-108. by Ian Holmes, Richard Durbin posted to homology alignment by yylin on 2009-09-21 08:41:25 as along with 1 person treangen
	Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties. [My Copy] BMC bioinformatics, Vol. 8 (21 September 2007), 356. by Jos Boekhorst, Berend Snel posted to homology context blast by ptrobajo on 2009-09-17 10:11:31 as along with 3 people eckart_bindewald julesyoo dandaman
	Homology Theory: An Introduction to Algebraic Topology [My Copy] (07 January 1994) by James W. Vick posted to homology algebraic_topology by NitinCR on 2009-09-05 23:03:43 as
	A Geometric Approach to Homology Theory [My Copy] (30 April 1976) by S. Buoncristiano, C. P. Rourke, B. J. Sanderson posted to homology geometry by NitinCR on 2009-09-05 22:44:18 as
	Homology modelling and spectroscopy, a never-ending love story [My Copy] European Biophysics Journal by Hanka Venselaar, Robbie Joosten, Bas Vroling, et al.Coos Baakman, Maarten Hekkelman, Elmar Krieger, Gert Vriend posted to vensel09pdf modeling homology by paulschlesinger on 2009-09-02 01:50:14 as
	TM-align: a protein structure alignment algorithm based on the TM-score. [My Copy] Nucleic acids research, Vol. 33, No. 7. (22 April 2005), pp. 2302-2309. by Yang Zhang, Jeffrey Skolnick posted to structure software similarity search protein homology algorithm by operon on 2009-09-01 11:25:08 as along with 7 people maria_hauser newton1234 joseolucha mijam reyez pjcite granujilla
	Phylogenetic profiles reveal evolutionary relationships within the “twilight zone” of sequence similarity [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (9 September 2008), pp. 13474-13479. by Gue S. Chang, Yoojin Hong, Kyung D. Ko, et al.Gaurav Bhardwaj, Edward C. Holmes, Randen L. Patterson, Damian B. van Rossum posted to similarity phylogenetics ortholog method homology evolution algorithm by operon on 2009-08-29 20:09:23 as along with 2 people marck bpcusack
	The Population and Evolutionary Dynamics of Homologous Gene Recombination in Bacteria [My Copy] PLoS Genet, Vol. 5, No. 8. (14 August 2009), e1000601. by Bruce R. Levin, Omar E. Cornejo posted to horizontalgenetransfert homology evolution bacteria by barriot on 2009-08-21 09:33:49 as along with 1 person jjray
	PROCAIN server for remote protein sequence similarity search [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2076-2077. by Yong Wang, Ruslan I. Sadreyev, Nick V. Grishin posted to web-server homology by kshameer on 2009-08-17 04:12:31 as along with 4 people and 1 group reyez carlosjavierna medic0747 phoenixzxl Journal picks
	Detecting species-site dependencies in large multiple sequence alignments. [My Copy] Nucleic acids research, Vol. 37, No. 18. (6 October 2009), pp. 5959-5968. by Roland Schwarz, Philipp N. Seibel, Sven Rahmann, et al.Christoph Schoen, Mirja Huenerberg, Clemens Müller-Reible, Thomas Dandekar, Rachel Karchin, Jörg Schultz, Tobias Müller posted to algorithm bioinformatics evolution homology phylogenetics similarity by operon on 2009-08-10 21:54:45 as along with 2 people and 1 group davidalee svenrahmann Orengo Group Journal Picks
	Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily [My Copy] Nucl. Acids Res., Vol. 32, No. 20. (23 November 2004), pp. 6129-6135. by Matheshwaran Saravanan, Janusz M. Bujnicki, Iwona A. Cymerman, Desirazu N. Rao, Valakunja Nagaraja posted to endonuclease enzyme fold homology protein restriction structure superfamily by robfsouza on 2009-08-07 01:08:43 as
	Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments. [My Copy] Nucleic acids research, Vol. 35, No. 7. (1 April 2007), pp. 2238-2246. by Dariusz Przybylski, Burkhard Rost posted to homology sequence by yylin on 2009-07-16 04:55:50 as along with 1 person maria_hauser
	Powerful fusion: PSI-BLAST and consensus sequences [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 1987-1993. by Dariusz Przybylski, Burkhard Rost posted to homology sequence by yylin on 2009-07-16 04:54:38 as along with 1 person marck
	?Homology? in proteins and nucleic acids: A terminology muddle and a way out of it [My Copy] Cell, Vol. 50, No. 5. (August 1987), 667. by G. Reeck posted to historic homology by adampah on 2009-07-15 15:53:20 as
	Automated detection of remote homology [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 3. (1 June 2002), pp. 362-367. by S. Dietmann posted to homology sequence by yylin on 2009-07-15 08:07:41 as
	On the Evolution of Protein Folds: Are Similar Motifs in Different Protein Folds the Result of Convergence, Insertion, or Relics of an Ancient Peptide World? [My Copy] Journal of Structural Biology, Vol. 134, No. 2-3. (May 2001), pp. 191-203. by A. Lupas posted to homology sequence by yylin on 2009-07-15 08:06:33 as along with 2 people and 2 groups chad_davis marcius BioinfoCIPF SGU-CIPF
	The limits of protein sequence comparison? [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 254-260. by William R. Pearson, Michael L. Sierk posted to homology sequence by yylin on 2009-07-15 08:05:14 as along with 3 people and 1 group svozil richardbickerton BioNica Bioinformatics
	Similar subunit interactions contribute to assembly of clathrin adaptor complexes and COPI complex: analysis using yeast three-hybrid system. [My Copy] Biochemical and biophysical research communications, Vol. 284, No. 4. (22 June 2001), pp. 1083-1089. by H. Takatsu, M. Futatsumori, K. Yoshino, Y. Yoshida, H. W. Shin, K. Nakayama posted to adaptors coatomer evolution homology by faion on 2009-07-14 17:44:31 as
	"Homology" in proteins and nucleic acids: a terminology muddle and a way out of it. [My Copy] Cell, Vol. 50, No. 5. (28 August 1987) by G. R. Reeck, C. de Haën, D. C. Teller, et al.R. F. Doolittle, W. M. Fitch, R. E. Dickerson, P. Chambon, A. D. McLachlan, E. Margoliash, T. H. Jukes posted to homology terminology toblog by idoerg on 2009-07-14 08:41:40 as
	Homology modeling in drug discovery: current trends and applications [My Copy] Drug Discovery Today, Vol. 14, No. 13-14. (05 July 2009), pp. 676-683. by Claudio N. Cavasotto, Sharangdhar S. Phatak posted to homology model modeling review by jerome on 2009-07-13 09:09:42 as along with 2 people agomez sschurer
	Protein structure homology modeling using SWISS-MODEL workspace. [My Copy] Nature protocols, Vol. 4, No. 1. (December 2009), pp. 1-13. by L. Bordoli, F. Kiefer, K. Arnold, P. Benkert, J. Battey, T. Schwede posted to homology prediction protein by flbarroso on 2009-07-05 18:31:09 as along with 3 people booker larian viktor21614
	Advances in homology protein structure modeling. [My Copy] Current protein & peptide science, Vol. 7, No. 3. (June 2006), pp. 217-227. by Z. Xiang posted to homology prediction protein by flbarroso on 2009-07-05 18:30:43 as along with 2 people mkotlyar wouterboomsma
	Homology a personal view on some of the problems [My Copy] Trends in Genetics, Vol. 16, No. 5. (1 May 2000), pp. 227-231. by W. Fitch posted to homology orthology paralogy by mtruksa on 2009-07-03 21:40:56 as along with 5 people jwm cgaugain BioNica renatomilani deluna
	The Pfam protein families database. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D281-288. by Robert D. Finn, John Tate, Jaina Mistry, et al.Penny C. Coggill, Stephen John J. Sammut, Hans-Rudolf R. Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. Sonnhammer, Alex Bateman posted to domain hmm homology methods pfam protein by katholt on 2009-06-28 09:08:00 as along with 13 people sjcockell badi MarcoAlvarez calderonv urgi guhjy idoerg BioNica paszkows bicko niallhaslam gjuggler coela
	Correspondence of function and phylogeny of ABC proteins based on an automated analysis of 20 model protein data sets [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 61, No. 4. (2005), pp. 888-899. by Georg Fuellen, Michael Spitzer, Paul Cullen, Stefan Lorkowski posted to abc eukaryotes functions homology phylogeny transporters by cgaugain on 2009-06-26 11:26:11 as
	SWISS-MODEL: An automated protein homology-modeling server. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3381-3385. by T. Schwede, J. Kopp, N. Guex, M. C. Peitsch posted to bioinformatics homology prediction protein by flbarroso on 2009-06-19 22:30:29 as along with 8 people shacko sebk bpb ffranca dgront gelack Haggan granujilla
	The SWISS-MODEL Repository of annotated three-dimensional protein structure homology models. [My Copy] Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004) by J. Kopp, T. Schwede posted to bioinformatics database homology protein by flbarroso on 2009-06-19 22:27:48 as along with 1 person dgront
	The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 2. (15 January 2006), pp. 195-201. by K. Arnold, L. Bordoli, J. Kopp, T. Schwede posted to bioinformatics homology modeling by flbarroso on 2009-06-19 22:22:15 as along with 4 people and 2 groups hervelequere chad_davis marcius ffranca BioinfoCIPF SGU-CIPF
	Topics in Heegaard Floer homology [My Copy] (15 Jun 2009) by Sucharit Sarkar posted to floer heegaard homology by philom on 2009-06-17 02:37:38 as
	SWISS-MODEL and the Swiss-Pdb Viewer: An environment for comparative protein modeling [My Copy] Electrophoresis, Vol. 18, No. 15. (1997), pp. 2714-2723. by Nicolas Guex, Manuel C. Peitsch posted to comparative homology modeling protein structure viewer by medic0747 on 2009-06-08 15:40:26 as along with 3 people chiufanlee mikelape ubcg08l
	MODBASE, a database of annotated comparative protein structure models and associated resources. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (23 January 2009) by Ursula Pieper, Narayanan Eswar, Ben M. Webb, et al.David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Marti-Renom, Fred P. Davis, Andrej Sali posted to comparative homology modeling protein by medic0747 on 2009-06-08 14:29:01 as along with 3 people tjimenez noraziz chad_davis
	Analysis and prediction of functionally important sites in proteins. [My Copy] Protein Sci, Vol. 16, No. 1. (January 2007), pp. 4-13. by S. Chakrabarti, C. J. Lanczycki posted to conservation_score functional_sites homology sequence_alignment by iaolier on 2009-06-03 11:43:03 as along with 6 people reyez tjimenez annotator_2006 MaggieYe zwang Jporci
	A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation [My Copy] Proceedings of the National Academy of Sciences (28 December 2007), 0707684105. by Michal Brylinski, Jeffrey Skolnick posted to binding_sites_prediction functional_sites homology protein_structure by iaolier on 2009-06-03 09:46:59 as along with 2 people cjeans zwang
	Common themes and variations in the rhodanese superfamily. [My Copy] IUBMB life, Vol. 59, No. 2. (February 2007), pp. 51-59. by R. Cipollone, P. Ascenzi, P. Visca posted to cipoll09pdf domain homology rhodanese superfamily by paulschlesinger on 2009-06-03 01:18:44 as
	Invertebrate Relationships: Patterns in Animal Evolution [My Copy] (23 February 1990) by Pat Willmer posted to biology constraints evolving homology invariances invertebrates order-structures organisms similarities symmetries by Scis0000002 on 2009-05-23 09:06:23 as
	Targeted Development of Registries of Biological Parts [My Copy] PLoS ONE, Vol. 3, No. 7. (16 July 2008), e2671. by Jean Peccoud, Megan F. Blauvelt, Yizhi Cai, et al.Kristal L. Cooper, Oswald Crasta, Emily C. Delalla, Clive Evans, Otto Folkerts, Blair M. Lyons, Shrinivasrao P. Mane, Rebecca Shelton, Matthew A. Sweede, Sally A. Waldon posted to biobanks biological-effects biological-structures biological-substrates combining components dbs digital-libraries extremal-biology fdls formal-biology formal-digital-libraries functionalities genomes homology hyperefficiency igem kbs libraries model-organisms modularity modules molecular-machines molecular-structures registries repositories reusability sequences synthetic-biology by Scis0000002 on 2009-05-22 18:52:21 as along with 7 people peccoud trm005 antonkratz austin guhjy gulsacan grahamc
	Augmented training of hidden Markov models to recognize remote homologs via simulated evolution [My Copy] Bioinformatics, Vol. 25, No. 13. (1 July 2009), pp. 1602-1608. by Anoop Kumar, Lenore Cowen posted to doctorate hmm homology search by operon on 2009-05-20 14:52:52 as along with 2 people and 2 groups ollieredfernwork AlexBateman Orengo Group Journal Picks Journal picks
	String Topology and Cyclic Homology [My Copy] (29 June 2006) by Ralph L. Cohen, Kathryn Hess, Alexander A. Voronov posted to homology strings topology by NitinCR on 2009-05-16 02:50:50 as
	Generalizing Morita Duality: A Homological Approach [My Copy] Journal of Algebra, Vol. 232, No. 1. (01 October 2000), pp. 282-298. by A. Tonolo posted to homology morita_duality by christiankissig on 2009-05-13 18:35:02 as
	QMEAN: A comprehensive scoring function for model quality assessment. [My Copy] Proteins (11 October 2007) by Pascal Benkert, Silvio C E C. Tosatto, Dietmar Schomburg posted to assessment homology model quality by cat_hutchinson68 on 2009-05-13 11:59:28 as along with 4 people larian j3xucite sebk cdeane
	A geometric model for Hochschild homology of Soergel bimodules [My Copy] (7 Aug 2007) by Ben Webster, Geordie Williamson posted to homology knot math by bwebster on 2009-05-11 19:17:36 as

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protein	43
evolution	38
sequence	38
algorithm	36
bioinformatics	30
search	26
modeling	25
alignment	21
orthology	18
structure	17
software	16
docking	14
methods	14
genome	13
prediction	13
phylogeny	12
rna	12
modelling	11
paralogy	11
blast	10
databases	10
gpcr	10
review	9
gene	8
hmm	8
similarity	8
algorithms	7
animals	7
data-mining	7
humans	7
model	7
phylogenomics	7
topology	7
acid	6
amino	6
amino-acid	6
binding	6
dna	6
ligand	6
proteins	6
svm	6
analysis	5
annotation	5
biology	5
comparative	5
database	5
design	5
models	5
molecular	5
motif	5
networks	5
phyloinformatics	5
proteome	5
synteny	5
tool	5
3dqsar	4
classification	4
clustering	4
gabaa	4
genetics	4
genomics	4
md	4
mice	4
ortholog	4
receptor	4
specificity	4
assessment	3
based	3
cells	3
character	3
comparison	3
complexes	3
computational	3
coverage	3
curvature	3
detection	3
developmental-biology	3
distribution	3
domain	3
drosophila	3
drug	3
enzyme	3
eukaryotic	3
evaluation	3
folding	3
genes	3
geometry	3
interactions	3
internet	3
mirna	3
network	3
noncoding	3
programs	3
prokaryotes	3
quality	3
screening	3
simulation	3
thesis	3
user-computer	3
wsn	3

Tag homology [at least 200 articles] Export

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