Tag horizontal-gene-transfer [100 articles] Export

Recent papers classified by the tag horizontal-gene-transfer.

	Horizontal gene transfer in eukaryotic evolution [My Copy] Nature Reviews Genetics, Vol. 9, No. 8. (01 August 2008), pp. 605-618. by Patrick J. Keeling, Jeffrey D. Palmer posted to evolution horizontal-gene-transfer review by tomhebbron on 2009-06-19 12:24:27 as along with 9 people mordiano kmachemer gwallau fungal dcolosi treangen Anachff dakelley bootsy
	From Gene Trees to Organismal Phylogeny in Prokaryotes:The Case of the γ-Proteobacteria [My Copy] PLoS Biol, Vol. 1, No. 1. (15 September 2003), e19. by Emmanuelle Lerat, Vincent Daubin, Nancy A. Moran posted to bacteria horizontal-gene-transfer phylogeny by Thaverkamp on 2009-04-27 15:30:51 as along with 5 people danatcaret knaseanka AaronDarling treangen fhsantanna
	Detecting Lateral Genetic Transfer [My Copy] Bioinformatics, Vol. 452 (2008), pp. 457-469. by Robert G. Beiko, Mark A. Ragan posted to genome horizontal-gene-transfer microbial phylogenetics by Thaverkamp on 2009-04-27 15:28:14 as along with 1 person calderonv
	A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm. [My Copy] BMC bioinformatics, Vol. 9 (07 October 2008), 419. by Sheila Podell, Terry Gaasterland, Eric E. Allen posted to bacteria bioinformatics database genome horizontal-gene-transfer method software by Thaverkamp to the group Bioinformatics on 2009-04-27 15:25:59 as along with 2 people cgaugain barriot
	Microbial co-habitation and lateral gene transfer: what transposases can tell us [My Copy] Genome Biology, Vol. 10 (24 April 2009), R45. by Sean, Nikos C. Kyrpides posted to habitat horizontal-gene-transfer microbial-ecology transposons by jmeppley on 2009-04-27 15:08:20 as along with 1 person and 1 group Thaverkamp Microbial-Ecology
	Looking for Darwin's footprints in the microbial world. [My Copy] Trends in microbiology (15 April 2009) by B Jesse J. Shapiro, Lawrence A A. David, Jonathan Friedman, Eric J J. Alm posted to evolution horizontal-gene-transfer microbial-species microbiology microorganism selection tree-of-life by jmeppley on 2009-04-22 20:39:06 as along with 3 people and 1 group dayjm thegoose Huub_odc microbiology_nijmegen
	Population genomics and the bacterial species concept. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 532 (2009), pp. 367-377. by M. A. Riley, M. Lizotte-Waniewski posted to horizontal-gene-transfer microbial-species population-genetics by jmeppley on 2009-04-16 14:51:19 as along with 4 people and 1 group jasontsai Zephyrus Thaverkamp AaronDarling Microbial-Ecology
	Estimating the extent of horizontal gene transfer in metagenomic sequences [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 136. by Javier Tamames, Andres Moya posted to community-genomics hgt-detection horizontal-gene-transfer microbial-ecology population-genetics by jmeppley on 2009-04-16 14:46:44 as along with 4 people and 1 group ajsferreira Thaverkamp neils karfunkel Microbial-Ecology
	Evolution of bacterial pathogenesis [My Copy] Cellular and Molecular Life Sciences (CMLS), Vol. 56, No. 9. (6 November 1999), pp. 719-728. by W. Ziebuhr, K. Ohlsen, H. Karch, T. Korhonen, J. Hacker posted to evolution pathogen horizontal-gene-transfer by tomhebbron on 2009-04-06 22:55:28 as along with 1 person VGreiff
	Phylogenetics and the cohesion of bacterial genomes. [My Copy] Science, Vol. 301, No. 5634. (8 August 2003), pp. 829-832. by V. Daubin, N. A. Moran, H. Ochman posted to bacteria genome horizontal-gene-transfer by tomhebbron on 2009-03-19 12:12:26 as along with 3 people bnchakraborty balajis AaronDarling
	Polydnaviruses of Braconid Wasps Derive from an Ancestral Nudivirus [My Copy] Science, Vol. 323, No. 5916. (13 February 2009), pp. 926-930. by Annie Bezier, Marc Annaheim, Juline Herbiniere, et al.Christoph Wetterwald, Gabor Gyapay, Sylvie Bernard-Samain, Patrick Wincker, Isabel Roditi, Manfred Heller, Maya Belghazi, Rita Pfister-Wilhem, Georges Periquet, Catherine Dupuy, Elisabeth Huguet, Anne-Nathalie Volkoff, Beatrice Lanzrein, Jean-Michel Drezen posted to immune virus horizontal-gene-transfer by tomhebbron on 2009-02-15 19:21:57 as along with 3 people and 1 group wsjames ulfmartinblom djkt Oxford Virology
	Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 44. (4 November 2008), pp. 17023-17028. by John K. Pace, ClÃ©ment Gilbert, Marlena S. Clark, CÃ©dric Feschotte posted to horizontal-gene-transfer by tomhebbron on 2009-02-05 21:12:43 as along with 6 people gwallau operon timflutre wimufi aprasad wsjames
	Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 29. (22 July 2008), pp. 10039-10044. by Tal Dagan, Yael Artzy-Randrup, William Martin posted to evolution genome network horizontal-gene-transfer by tomhebbron on 2009-02-04 23:00:04 as along with 3 people treangen AaronDarling druvus
	Larval transfer and the origins of larvae [My Copy] Zoological Journal of the Linnean Society, Vol. 131, No. 1. (2001), pp. 111-122. by Donald I. Williamson posted to larvae horizontal-gene-transfer by tomhebbron on 2009-02-03 23:05:23 as
	Role of Intraspecies Recombination in the Spread of Pathogenicity Islands within the Escherichia coli Species [My Copy] PLoS Pathog, Vol. 5, No. 1. (January 2009), e1000257. by Sören Schubert, Pierre Darlu, Olivier Clermont, et al.Andreas Wieser, Giuseppe Magistro, Christiane Hoffmann, Kirsten Weinert, Olivier Tenaillon, Ivan Matic, Erick Denamur posted to escherichia-coli genomic-islands horizontal-gene-transfer pathogenicity-islands by mlangill on 2009-01-18 17:37:04 as along with 1 person katholt
	Unsupervised learning in detection of gene transfer. [My Copy] Journal of biomedicine & biotechnology, Vol. 2008 (2008) by L. Hamel, N. Nahar, M. S. Poptsova, O. Zhaxybayeva, J. P. Gogarten posted to f1000-review horizontal-gene-transfer prediction by mlangill on 2008-12-14 21:19:28 as
	Direct Visualization of Horizontal Gene Transfer [My Copy] Science, Vol. 319, No. 5869. (14 March 2008), pp. 1533-1536. by Ana Babic, Ariel B. Lindner, Marin Vulic, Eric J. Stewart, Miroslav Radman posted to evolution horizontal-gene-transfer by niallhaslam on 2008-04-22 10:23:58 as along with 6 people yyfwuhan treangen madhadron zwang melting dbikard
	The evolution of gene collectives: How natural selection drives chemical innovation [My Copy] Proceedings of the National Academy of Sciences (23 January 2008), 0709132105. by Michael A. Fischbach, Christopher T. Walsh, Jon Clardy posted to evolution genome horizontal-gene-transfer network by tomhebbron on 2008-03-25 23:08:44 as along with 3 people stevanspringer operon cjeans
	Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers [My Copy] Environmental Microbiology, Vol. 6, No. 1. (2004), pp. 19-34. by Purificacion Lopez-Garcia, Celine Brochier, David Moreira, Francisco Rodriguez-Valera posted to delong-lab horizontal-gene-transfer marine-microbiology by jmeppley on 2007-09-19 02:24:51 as along with 1 person vrich
	Statistical tests for detecting gene conversion. [My Copy] Mol Biol Evol, Vol. 6, No. 5. (September 1989), pp. 526-538. by S. Sawyer posted to hgt-detection hgt-mosaic-genome horizontal-gene-transfer recombination by jmeppley on 2007-05-22 22:38:31 as along with 3 people operon AaronDarling treangen
	Sex and virulence in <i>Escherichia coli</i>: an evolutionary perspective [My Copy] Molecular Microbiology, Vol. 60, No. 5. (June 2006), pp. 1136-1151. by Thierry Wirth, Daniel Falush, Ruiting Lan, et al.Frances Colles, Patience Mensa, Lothar H. Wieler, Helge Karch, Peter R. Reeves, Martin C. J. Maiden, Howard Ochman, Mark Achtman posted to escherichia-coli evolution horizontal-gene-transfer microbial-genetics recombination z-paper-fer1-fer2-species by jmeppley on 2007-03-03 18:47:31 as along with 3 people katholt miaohehe Xavier
	Importance of widespread gene transfer agent genes in [alpha]-proteobacteria [My Copy] Trends in Microbiology, Vol. 15, No. 2. (February 2007), pp. 54-62. by Andrew S. Lang, Thomas J. Beatty posted to microbiology horizontal-gene-transfer by jmeppley on 2007-02-07 20:59:13 as along with 1 person vpaces
	Bacterial populations as perfect gases: genomic integrity and diversification tensions in Helicobacter pylori [My Copy] Nat Rev Micro, Vol. 4, No. 11. (November 2006), pp. 826-836. by Josephine Kang, Martin J. Blaser posted to diversity horizontal-gene-transfer microbial-species speciation by jmeppley on 2006-10-16 19:42:47 as
	Insights into extreme thermoacidophily based on genome analysis of Picrophilus torridus and other thermoacidophilic archaea [My Copy] Journal of Biotechnology In Aspects of Prokaryotic Genome Research, Vol. 126, No. 1. (20 October 2006), pp. 3-10. by A. Angelov, W. Liebl posted to acidophile archaea extremophile genomics horizontal-gene-transfer by jmeppley on 2006-09-29 17:09:27 as along with 1 person aangelo
	Evolutionary Implications of the Frequent Horizontal Transfer of Mismatch Repair Genes [My Copy] Cell, Vol. 103, No. 5. (22 November 2000), pp. 711-721. by Erick Denamur, Guillaume Lecointre, Pierre Darlu, et al.Olivier Tenaillon, Cecile Acquaviva, Chalom Sayada, Ivana Sunjevaric, Rodney Rothstein, Jacques Elion, Francois Taddei posted to horizontal-gene-transfer mismatch-repair by jmeppley on 2006-08-09 16:32:41 as
	Phylogenetic reconstruction and lateral gene transfer. [My Copy] Trends Microbiol, Vol. 12, No. 9. (September 2004), pp. 406-411. by E. Bapteste, Y. Boucher, J. Leigh, W. F. Doolittle posted to horizontal-gene-transfer microbial-species phylogenetics z-paper-background z-paper-fer1-fer2-species by jmeppley on 2006-08-03 21:57:51 as
	The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis. [My Copy] Mol Biol Evol, Vol. 16, No. 11. (November 1999), pp. 1496-1502. by E. J. Feil, M. C. Maiden, M. Achtman, B. G. Spratt posted to evolution horizontal-gene-transfer recombination z-paper-fer1-fer2-species by jmeppley on 2006-07-14 00:33:18 as along with 1 person AaronDarling
	RE-EVALUATING PROKARYOTIC SPECIES [My Copy] Nat Rev Micro, Vol. 3, No. 9. (2005), pp. 733-739. by Dirk Gevers, Frederick M. Cohan, Jeffrey G. Lawrence, et al.Brian G. Spratt, Tom Coenye, Edward J. Feil, Erko Stackebrandt, Yves V. de Peer, Peter Vandamme, Fabiano L. Thompson, Jean Swings posted to horizontal-gene-transfer microbial-species x-microbial-species z-paper-background by jmeppley on 2006-07-12 00:02:42 as along with 1 person karfunkel
	Global divergence of microbial genome sequences mediated by propagating fronts. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 20. (17 May 2005), pp. 7332-7337. by K. Vetsigian, N. Goldenfeld posted to horizontal-gene-transfer recombination recombination-divergence z-paper-background by jmeppley on 2006-06-23 23:49:51 as along with 1 person AaronDarling
	Lateral gene transfer: when will adolescence end? [My Copy] Mol Microbiol, Vol. 50, No. 3. (November 2003), pp. 739-749. by J. G. Lawrence, H. Hendrickson posted to horizontal-gene-transfer by jmeppley on 2006-06-23 23:33:50 as along with 3 people AaronDarling treangen gcarbajosa
	Recombination within natural populations of pathogenic bacteria: Short-term empirical estimates and long-term phylogenetic consequences [My Copy] PNAS, Vol. 98, No. 1. (2 January 2001), pp. 182-187. by Edward J. Feil, Edward C. Holmes, Debra E. Bessen, et al.Man-Suen Chan, Nicholas P. Day, Mark C. Enright, Richard Goldstein, Derek W. Hood, Awdhesh Kalia, Catrin E. Moore, Jiaji Zhou, Brian G. Spratt posted to horizontal-gene-transfer phylogenetics recombination by jmeppley on 2006-06-23 23:15:02 as along with 3 people vplagnol CharlesM mrthvzqz
	Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli [My Copy] Genome Biology, Vol. 7, No. 5. (31 May 2006), R44. by Bob Mau, Jeremy Glasner, Aaron Darling, Nicole Perna posted to escherichia-coli horizontal-gene-transfer recombination recombination-detection x-recomb-evidence z-paper-fer1-fer2-species by jmeppley on 2006-06-15 21:57:25 as along with 3 people druvus AaronDarling vplagnol
	Recombination in Thermotoga: implications for species concepts and biogeography. [My Copy] Genetics, Vol. 172, No. 2. (February 2006), pp. 759-769. by C. L. Nesbø, M. Dlutek, W. F. Doolittle posted to horizontal-gene-transfer microbial-species recombination speciation thermotoga x-recomb-frequency z-paper-background z-paper-fer1-fer2-species by jmeppley on 2006-06-13 19:22:36 as
	Genetic exchange and evolutionary divergence in prokaryotes [My Copy] Trends in Ecology & Evolution, Vol. 9, No. 5. (May 1994), pp. 175-180. by Frederick M. Cohan posted to evolution horizontal-gene-transfer microbial-species x-coalescence-model z-paper-background z-paper-fer1-fer2-species by jmeppley on 2006-05-16 17:18:46 as
	Does Recombination Constrain Neutral Divergence Among Bacterial Taxa? [My Copy] Evolution, Vol. 49, No. 1. (1995), pp. 164-175. by Frederick M. Cohan posted to evolution horizontal-gene-transfer microbial-species recombination x-coalescence-model z-paper-background z-paper-fer1-fer2-species by jmeppley on 2006-05-16 17:18:20 as
	The Effects of Rare but Promiscuous Genetic Exchange on Evolutionary Divergence in Prokaryotes [My Copy] The American Naturalist, Vol. 143, No. 6. (1994), pp. 965-986. by Frederick M. Cohan posted to horizontal-gene-transfer microbial-species x-coalescence-model z-paper-background z-paper-fer1-fer2-species z-paper-strainer by jmeppley on 2006-05-16 17:15:00 as
	The effect of DNA sequence divergence on sexual isolation in Bacillus. [My Copy] Genetics, Vol. 134, No. 2. (June 1993), pp. 401-408. by M. S. Roberts, F. M. Cohan posted to hgt-mechanism horizontal-gene-transfer microbial-species recombination recombination-divergence z-paper-background z-paper-fer1-fer2-species by jmeppley on 2006-05-16 04:46:39 as
	Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data. [My Copy] Int J Syst Bacteriol, Vol. 47, No. 4. (October 1997), pp. 1145-1156. by T. Palys, L. K. Nakamura, F. M. Cohan posted to clustering horizontal-gene-transfer microbial-species recombination x-coalescence-model z-paper-background z-paper-fer1-fer2-species by jmeppley on 2006-05-16 04:39:44 as along with 1 person mcox
	Recombination shapes the natural population structure of the hyperthermophilic archaeon Sulfolobus islandicus. [My Copy] Mol Biol Evol, Vol. 22, No. 12. (December 2005), pp. 2354-2361. by R. J. Whitaker, D. W. Grogan, J. W. Taylor posted to hgt-archaea horizontal-gene-transfer microbial-populations population-genetics population-structure recombination sulfolobus x-recomb-evidence x-recomb-frequency z-paper-fer1-fer2-species by jmeppley on 2006-05-12 20:14:50 as along with 1 person AaronDarling
	Studies on codon usage in Thermoplasma acidophilum and its possible implications on the occurrences of lateral gene transfer. [My Copy] J Basic Microbiol, Vol. 45, No. 5. (2005), pp. 344-354. by S. K. Gupta, T. Banerjee, S. Basak, K. Sahu, S. Sau, T. C. Ghosh posted to comparative-genomics hgt-archaea horizontal-gene-transfer x-recomb-evidence by jmeppley on 2006-05-12 20:12:26 as
	Lateral gene transfer and the nature of bacterial innovation [My Copy] Nature, Vol. 405, No. 6784. (18 May 2000), pp. 299-304. by Howard Ochman, Jeffrey G. Lawrence, Eduardo A. Groisman posted to evolution horizontal-gene-transfer z-paper-background by jmeppley on 2006-05-12 20:05:34 as along with 12 people and 2 groups kmachemer cambray pkm mikheyev balicea johanviklund cmzmasek ana gregdingle Ayest treangen manzanita structural_bioinformatics Bioinformatics
	Homologous recombination of exogenous DNA with the Sulfolobus acidocaldarius genome: Properties and uses [My Copy] FEMS Microbiology Letters, Vol. 253, No. 1. (1 December 2005), pp. 141-149. by Norio Kurosawa, Dennis W. Grogan posted to archaea hgt-archaea horizontal-gene-transfer recombination x-recomb-evidence by jmeppley on 2006-05-12 18:11:27 as
	Rates of spontaneous mutation. [My Copy] Genetics, Vol. 148, No. 4. (1 April 1998), pp. 1667-1686. by J. W. Drake, B. Charlesworth, D. Charlesworth, J. F. Crow posted to horizontal-gene-transfer recombination recombination-divergence by jmeppley on 2006-05-01 22:38:20 as along with 3 people operon cambray yonatanf
	Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation. [My Copy] J Bacteriol, Vol. 182, No. 4. (February 2000), pp. 1016-1023. by J. Majewski, P. Zawadzki, P. Pickerill, F. M. Cohan, C. G. Dowson posted to horizontal-gene-transfer recombination recombination-divergence z-paper-fer1-fer2-species by jmeppley on 2006-05-01 22:37:55 as
	The Log-Linear Relationship Between Sexual Isolation and Sequence Divergence in Bacillus Transformation is Robust [My Copy] Genetics, Vol. 140, No. 3. (1 July 1995), pp. 917-932. by P. Zawadzki, M. S. Roberts, F. M. Cohan posted to bacillus horizontal-gene-transfer recombination recombination-divergence x-recomb-frequency z-paper-fer1-fer2-species by jmeppley on 2006-05-01 22:37:40 as
	DNA Sequence Similarity Requirements for Interspecific Recombination in Bacillus [My Copy] Genetics, Vol. 153, No. 4. (1 December 1999), pp. 1525-1533. by Jacek Majewski, Frederick M. Cohan posted to bacillus horizontal-gene-transfer recombination recombination-divergence x-recomb-frequency z-paper-background z-paper-fer1-fer2-species by jmeppley on 2006-05-01 22:35:35 as
	Operon formation is driven by co-regulation and not by horizontal gene transfer. [My Copy] Genome Res, Vol. 15, No. 6. (June 2005), pp. 809-819. by M. N. Price, K. H. Huang, A. P. Arkin, E. J. Alm posted to horizontal-gene-transfer operon regulation by rabu on 2006-04-03 17:51:14 as along with 1 person lingchong
	Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ. [My Copy] Genome Biol, Vol. 4, No. 9. (2003) by M. V. Omelchenko, K. S. Makarova, Y. I. Wolf, I. B. Rogozin, E. V. Koonin posted to horizontal-gene-transfer by rabu on 2006-04-03 17:48:07 as along with 2 people jmeppley AaronDarling
	Recombination in Escherichia coli and the definition of biological species. [My Copy] J Bacteriol, Vol. 173, No. 22. (November 1991), pp. 7257-7268. by D. E. Dykhuizen, L. Green posted to escherichia-coli horizontal-gene-transfer microbial-species recombination speciation z-paper-background by jmeppley on 2006-03-24 23:50:49 as along with 2 people AaronDarling pkm
	Stepwise detection of recombination breakpoints in sequence alignments [My Copy] Bioinformatics, Vol. 21, No. 5. (01 March 2005), pp. 589-595. by Jinko Graham, Brad Mcneney, Francoise Seillier-Moiseiwitsch posted to hgt-detection horizontal-gene-transfer by jmeppley on 2006-03-23 23:32:16 as along with 2 people AaronDarling treangen

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hgt-detection	26
trial-lecture	25
evolution	24
recombination	19
microbial-species	18
z-paper-background	18
z-paper-fer1-fer2-species	17
comparative-genomics	11
phylogenetics	11
hgt-mosaic-genome	8
printed	8
speciation	8
archaea	7
bacteria	7
diversity	7
recombination-divergence	7
genome	6
software	6
x-microbial-species	6
escherichia-coli	5
phylogeny	5
x-recomb-evidence	5
x-recomb-frequency	5
x-recombination-detection	5
genomics	4
hgt-detection-software	4
tree-of-life	4
x-coalescence-model	4
community-genomics	3
database	3
ecoli	3
hgt-archaea	3
microbial-genomics	3
population-genetics	3
unprinted	3
bacillus	2
bioinformatics	2
hgt-mechanism	2
kingdom-history	2
method	2
microbial	2
microbial-diversity	2
microbial-ecology	2
microbiology	2
microorganism	2
network	2
recombination-rrna	2
acidophile	1
classification	1
clustering	1
delong-lab	1
extremophile	1
f1000-review	1
genomic-islands	1
grant	1
habitat	1
host-parasite	1
hyperthermophile	1
immune	1
larvae	1
marine-microbiology	1
metagenomics	1
microbial-genetics	1
microbial-populations	1
mismatch-repair	1
mitochondrial-dna	1
molecular-mechanismms	1
operon	1
pathogen	1
pathogenicity-islands	1
population-structure	1
prediction	1
proteins	1
recombination-detection	1
recombination-mechanism	1
regulation	1
review	1
selection	1
sequence-alignment	1
species-concept	1
ssu	1
sulfolobus	1
thermotoga	1
transposons	1
virus	1
x-recomb-mechanism	1
z-paper-strainer	1

Tag horizontal-gene-transfer [100 articles] Export

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