Tag hotspots [101 articles] Export

Recent papers classified by the tag hotspots.

	Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (30 October 2009), 365. by Stefano Lise, Cedric Archambeau, Massimiliano Pontil, David Jones posted to ppi interface hotspots 2009 by higueruelo on 2009-11-03 16:40:16 as along with 6 people and 1 group sillitoe apaydin kshameer zwang phoenixzxl neils Orengo Group Journal Picks
	SuperStar: A Knowledge-based Approach for Identifying Interaction Sites in Proteins☆☆☆ [My Copy] Journal of Molecular Biology, Vol. 289, No. 4. (18 June 1999), pp. 1093-1108. by Marcel L. Verdonk, Jason C. Cole, Robin Taylor posted to pharmacophores hotspots by ubcg08l on 2009-10-07 17:07:24 as along with 1 person tjimenez
	Organic solvents identify specific ligand binding sites on protein surfaces [My Copy] Nat Biotech, Vol. 15, No. 3. (March 1997), pp. 264-268. by Edvards Liepinsh, Gottfried Otting, Edvards Liepinsh, Gottfried Otting posted to solvent hotspots by ubcg08l on 2009-10-07 15:36:46 as
	Identification of hot-spot residues in protein-protein interactions by computational docking. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Solène Grosdidier, Juan Fernández-Recio posted to hotspots by ubcg08l on 2009-10-07 15:23:59 as along with 6 people pablocarb bicko grahamc higueruelo i000 neils
	Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. 1513-1520. by Nurcan Tuncbag, Attila Gursoy, Ozlem Keskin posted to hotspots by ubcg08l on 2009-10-07 15:22:48 as along with 5 people and 1 group dfdong marti apaydin kshameer phoenixzxl structural_bioinformatics
	Unraveling hot spots in binding interfaces: progress and challenges. [My Copy] Current opinion in structural biology, Vol. 12, No. 1. (February 2002), pp. 14-20. by Warren L. DeLano posted to hotspots by ubcg08l on 2009-10-07 15:22:07 as along with 3 people bicko Dualsystems higueruelo
	Multiple Solvent Crystal Structures: Probing Binding Sites, Plasticity and Hydration [My Copy] Journal of Molecular Biology, Vol. 357, No. 5. (14 April 2006), pp. 1471-1482. by Carla Mattos, Cornelia R. Bellamacina, Ezra Peisach, et al.Antonio Pereira, Dennis Vitkup, Gregory A. Petsko, Dagmar Ringe posted to mscs hotspots by ubcg08l on 2009-10-07 10:03:16 as
	A computational procedure for determining energetically favorable binding sites on biologically important macromolecules [My Copy] Journal of Medicinal Chemistry, Vol. 28, No. 7. (1 July 1985), pp. 849-857. by P. J. Goodford posted to hotspots fragments by ubcg08l on 2009-09-21 16:03:53 as
	Biodiversity hotspots for conservation priorities [My Copy] Nature, Vol. 403, No. 6772. (24 February 2000), pp. 853-858. by Norman Myers, Russell A. Mittermeier, Cristina G. Mittermeier, Gustavo A. B. da Fonseca, Jennifer Kent posted to hotspots conservation_priorities by phig on 2009-09-20 13:42:07 as along with 4 people and 2 groups mrobles kaiserm Flit taka biodiversity_conservation Global_biodiversity_model
	Multiple diverse ligands binding at a single protein site: a matter of pre-existing populations. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 2. (1 February 2002), pp. 184-197. by Buyong Ma, Maxim Shatsky, Haim J. Wolfson, Ruth Nussinov posted to protein-ensembles hotspots hinges docking by ubcg08l on 2009-09-04 11:32:24 as along with 3 people and 1 group yongzhao ruvido jlh64 TSRI_MGL
	Novel druggable hot spots in avian influenza neuraminidase H5N1 revealed by computational solvent mapping of a reduced and representative receptor ensemble. [My Copy] Chemical biology & drug design, Vol. 71, No. 2. (February 2008), pp. 106-116. by Melissa R. Landon, Rommie E. Amaro, Riccardo Baron, et al.Chi Ho H. Ngan, David Ozonoff, J. Andrew McCammon, Sandor Vajda posted to hotspots fragments by ubcg08l on 2009-09-01 11:41:07 as
	Motifs for molecular recognition exploiting hydrophobic enclosure in protein-ligand binding. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 3. (16 January 2007), pp. 808-813. by Tom Young, Robert Abel, Byungchan Kim, Bruce J. Berne, Richard A. Friesner posted to water hydrophobicity hotspots by ubcg08l on 2009-08-27 09:09:30 as along with 5 people Diego_Prada LamBras daevans jwagoner zwang
	Identification of hot spots within druggable binding regions by computational solvent mapping of proteins. [My Copy] Journal of medicinal chemistry, Vol. 50, No. 6. (22 March 2007), pp. 1231-1240. by Melissa R. Landon, David R. Lancia, Jessamin Yu, Spencer C. Thiel, Sandor Vajda posted to hotspots fragments by ubcg08l on 2009-08-27 09:02:54 as along with 3 people bicko willpitt tjimenez
	Grand Canonical Monte Carlo Simulation of Ligand−Protein Binding [My Copy] Journal of Chemical Information and Modeling, Vol. 46, No. 1. (1 January 2006), pp. 231-242. by Matthew Clark, Frank Guarnieri, Igor Shkurko, Jeff Wiseman posted to scoring hotspots fragments docking by ubcg08l on 2009-08-27 08:56:45 as along with 2 people ttjoseph daevans
	Developing a dynamic pharmacophore model for HIV-1 integrase. [My Copy] Journal of medicinal chemistry, Vol. 43, No. 11. (1 June 2000), pp. 2100-2114. by H. A. Carlson, K. M. Masukawa, K. Rubins, et al.F. D. Bushman, W. L. Jorgensen, R. D. Lins, J. M. Briggs, J. A. McCammon posted to hotspots fragments conformational by ubcg08l on 2009-08-27 08:54:01 as along with 3 people apaydin dimka blackbart
	Exhaustive docking of molecular fragments with electrostatic solvation. [My Copy] Proteins, Vol. 37, No. 1. (1 October 1999), pp. 88-105. by N. Majeux, M. Scarsi, J. Apostolakis, C. Ehrhardt, A. Caflisch posted to hotspots fragments docking by ubcg08l on 2009-08-27 08:50:37 as along with 1 person apostola
	Regulatory Hotspots in the Malaria Parasite Genome Dictate Transcriptional Variation [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e238. by Joseph M. Gonzales, Jigar J. Patel, Napawan Ponmee, et al.Lei Jiang, Asako Tan, Steven P. Maher, Stefan Wuchty, Pradipsinh K. Rathod, Michael T. Ferdig posted to transcription regulatory malaria hotspots falciparum eqtl biology by arider1 on 2009-08-13 20:34:57 as along with 3 people semrich caseybrown djkt
	Graph theoretical approach to study eQTL: a case study of Plasmodium falciparum. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i15-20. by Yang Huang, Stefan Wuchty, Michael T. Ferdig, Teresa M. Przytycka posted to network hotspots graph eqtl analysis by arider1 on 2009-08-13 20:31:17 as along with 4 people guhjy mingzhi GeeSharpMinor sameersoi
	Probing Hot Spots at Protein−Ligand Binding Sites: A Fragment-Based Approach Using Biophysical Methods [My Copy] Journal of Medicinal Chemistry, Vol. 49, No. 16. (1 August 2006), pp. 4992-5000. by Alessio Ciulli, Glyn Williams, Alison G. Smith, Tom L. Blundell, Chris Abell posted to hotspots fragments by ubcg08l on 2009-08-11 15:25:40 as
	Fragment-based identification of druggable 'hot spots' of proteins using Fourier domain correlation techniques [My Copy] Bioinformatics, Vol. 25, No. 5. (1 March 2009), pp. 621-627. by Ryan Brenke, Dima Kozakov, Gwo-Yu Chuang, et al.Dmitri Beglov, David Hall, Melissa R. Landon, Carla Mattos, Sandor Vajda posted to binding fragments hotspots pharmacophores by ubcg08l on 2009-08-10 16:01:17 as along with 3 people pauldobson kabookie reyez
	Evolution of Mutational Robustness in the Yeast Genome: A Link to Essential Genes and Meiotic Recombination Hotspots [My Copy] PLoS Genet, Vol. 5, No. 6. (26 Jun 2009), e1000533. by Philipp J. Keller, Michael Knop posted to essentiality evolution gene hotspots meiosis mutation recombination robustness by robfsouza on 2009-08-05 17:05:14 as along with 1 person jjray
	Energy based approach for understanding the recognition mechanism in protein-protein complexes. [My Copy] Molecular bioSystems (7 July 2009) by Michael M. Gromiha, Kiyonobu Yokota, Kazuhiko Fukui posted to 2009 hotspots interface ppi by higueruelo on 2009-07-29 14:44:53 as
	Probing hot spots on protein-protein interfaces with all-atom free-energy simulation. [My Copy] The Journal of chemical physics, Vol. 131, No. 3. (21 July 2009) by I. Meliciani, K. Klenin, T. Strunk, K. Schmitz, W. Wenzel posted to 2009 alascanning computational hotspots ppi by higueruelo on 2009-07-29 14:02:51 as
	Empirical estimation of the energetic contribution of individual interface residues in structures of protein–protein complexes [My Copy] Journal of Computer-Aided Molecular Design by Mainak Guharoy, Pinak Chakrabarti posted to 2009 hotspots ppi by higueruelo on 2009-06-08 16:48:19 as
	Thermodynamic and structural investigation of bi-specificity in protein-protein interactions [My Copy] Journal of Molecular Biology (08 April 2009) by Huaying Zhao, Saranga Naganathan, Dorothy Beckett posted to 2009 dimer hotspots ppi thermo by higueruelo on 2009-04-17 12:24:51 as along with 2 people zwang paulschlesinger
	The Relationship Between Microsatellite Polymorphism and Recombination Hot Spots in the Human Genome [My Copy] Mol Biol Evol, Vol. 25, No. 12. (1 December 2008), pp. 2579-2587. by Mikael Brandstrom, Andrew T. Bagshaw, Neil J. Gemmell, Hans Ellegren posted to geneticspaper hotspots mutation recombination by gbloeb on 2009-03-18 16:58:11 as along with 1 person djkt
	A feature-based approach to modeling protein-protein interaction hot spots [My Copy] Nucl. Acids Res., Vol. 37, No. 8. (1 May 2009), pp. 2672-2687. by Kyu-Il Cho, Dongsup Kim, Doheon Lee posted to 2009 hotspots interface ppi xf by higueruelo on 2009-03-17 16:45:45 as along with 5 people pablocarb flbarroso phoenixzxl zwang neils
	A Fine-Structure Map of Spontaneous Mitotic Crossovers in the Yeast <italic>Saccharomyces cerevisiae</italic> [My Copy] PLoS Genet, Vol. 5, No. 3. (13 March 2009), e1000410. by Phoebe S. Lee, Patricia W. Greenwell, Margaret Dominska, Malgorzata Gawel, Monica Hamilton, Thomas D. Petes posted to hotspots recombination-rates sex by jasontsai on 2009-03-17 14:51:03 as along with 1 person semrich
	Energetic determinants of protein binding specificity: insights into protein interaction networks. [My Copy] Proteomics, Vol. 9, No. 7. (27 April 2009), pp. 1744-1753. by Pablo Carbonell, Ruth Nussinov, Antonio del Sol posted to 2009 hotspots inteface thermo by higueruelo on 2009-03-03 13:22:37 as along with 2 people icq242500260 pablocarb
	Principal determinants leading to transition state formation of a protein-protein complex, orientation trumps side-chain interactions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (5 February 2009) by James R R. Horn, Tobin R R. Sosnick, Anthony A A. Kossiakoff posted to 2009 hotspots interface ppi thermo ts by higueruelo on 2009-02-10 09:40:36 as along with 2 people and 2 groups amishp barry structural_bioinformatics McCammon
	Exploring the Molecular Design of Protein Interaction Sites with Molecular Dynamics Simulations and Free Energy Calculations (dagger). [My Copy] Biochemistry (29 December 2008) by Shide Liang, Liwei Li, Wei-Lun L. Hsu, et al.Meaghan N N. Pilcher, Vladimir Uversky, Yaoqi Zhou, A Keith K. Dunker, Samy O O. Meroueh posted to 2009 hotspots ppdocking ppi thermo by higueruelo on 2009-01-19 12:08:53 as along with 2 people flbarroso sjcockell
	Dimers of Silver Nanospheres: Facile Synthesis and Their Use as Hot Spots for Surface-Enhanced Raman Scattering [My Copy] Nano Letters, Vol. 9, No. 1. (14 January 2009), pp. 485-490. by Weiyang Li, Pedro H. C. Camargo, Xianmao Lu, Younan Xia posted to ag dimers hotspots nanoparticles raman scattering sers silver surface synthesis surface-enhanced by rodney on 2008-12-23 18:20:17 as along with 2 people jerlf01 SGT
	Automated clustering of probe molecules from solvent mapping of protein surfaces: new algorithms applied to hot-spot mapping and structure-based drug design. [My Copy] Journal of computer-aided molecular design (5 August 2008) by Michael G. Lerner, Kristin L. Meagher, Heather A. Carlson posted to 2008 hotspots pocket ppi probes xf by higueruelo on 2008-08-29 13:31:17 as along with 2 people and 1 group jmccammon sschurer McCammon
	Biodiversity Hotspots in the Mediterranean Basin: Setting Global Conservation Priorities [My Copy] Conservation Biology, Vol. 13, No. 6. (1999), pp. 1510-1513. by Frédéric Médail, Pierre Quézel posted to hotspots mediterranean priorities by korhan on 2008-08-13 17:04:39 as
	Biodiversity Turning up the heat on hotspots [My Copy] Nature, Vol. 436, No. 7053. (17 August 2005), pp. 919-920. by Hugh P. Possingham, Kerrie A. Wilson posted to hotspots priorities by korhan on 2008-08-13 16:31:33 as along with 1 person liucun
	Global mammal distributions, biodiversity hotspots, and conservation [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 51. (19 December 2006), pp. 19374-19379. by Gerardo Ceballos, Paul R. Ehrlich posted to biodiversity hotspots mammals by bhaskaracharya on 2008-08-13 11:56:54 as along with 1 person terasajack
	Sperm cross-over activity in regions of the human genome showing extreme breakdown of marker association. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 30. (29 July 2008), pp. 10471-10476. by A. J. Webb, I. L. Berg, A. Jeffreys posted to bgc hotspots human recombination-rates by jasontsai on 2008-08-08 09:39:06 as along with 2 people jlangdon stevanspringer
	The biodiversity challenge: Expanded hot-spots analysis [My Copy] The Environmentalist, Vol. 10, No. 4. (16 December 1990), pp. 243-256. by Norman Myers posted to hotspots by korhan on 2008-07-31 01:58:32 as
	Biodiversity hotspots [My Copy] Trends in Ecology & Evolution, Vol. 13, No. 7. (1 July 1998), pp. 275-280. by Walter V. Reid posted to global hotspots prioritization scale by korhan on 2008-07-31 01:44:16 as along with 1 person kaiserm
	Rare species, the coincidence of diversity hotspots and conservation strategies [My Copy] Nature, Vol. 365, No. 6444. (1993), pp. 335-337. by J. R. Prendergast, R. M. Quinn, J. H. Lawton, B. C. Eversham, D. W. Gibbons posted to hotspots rarespecies strategies by korhan on 2008-07-31 01:12:41 as
	Hotspots and ecoregions: a test of conservation priorities using taxonomic data [My Copy] Biodiversity and Conservation, Vol. 12, No. 11. (1 November 2003), pp. 2237-2253. by Gary A. Krupnick, John posted to ecoregions hotspots prioritization by korhan on 2008-07-31 01:05:39 as along with 1 person iwagner
	Global hotspots of species richness are not congruent with endemism or threat [My Copy] Nature, Vol. 436, No. 7053., pp. 1016-1019. by David, Richard G. Davies, Malcolm Burgess, et al.Felix Eigenbrod, Nicola Pickup, Valerie A. Olson, Andrea J. Webster, Tzung-Su Ding, Pamela C. Rasmussen, Robert S. Ridgely, Ali J. Stattersfield, Peter M. Bennett, Tim M. Blackburn, Kevin J. Gaston, Ian P. F. Owens posted to endemism global hotspots by korhan on 2008-07-31 00:58:50 as along with 4 people and 3 groups liucun Flit e2holmes gulsacan biodiversity_conservation Global_biodiversity_model Stoc_Proc_Ecology_WG
	The Recombinational Anatomy of a Mouse Chromosome [My Copy] PLoS Genet, Vol. 4, No. 7. (11 July 2008), e1000119. by Kenneth Paigen, Jin P. Szatkiewicz, Kathryn Sawyer, et al.Nicole Leahy, Emil D. Parvanov, Siemon H. Ng, Joel H. Graber, Karl W. Broman, Petko M. Petkov posted to hotspots recombination-rates by jasontsai on 2008-07-27 10:39:42 as along with 2 people djkt inesdesantiago
	High-resolution mapping of meiotic crossovers and non-crossovers in yeast. [My Copy] Nature, Vol. 454, No. 7203. (24 July 2008), pp. 479-485. by Eugenio Mancera, Richard Bourgon, Alessandro Brozzi, Wolfgang Huber, Lars M. Steinmetz posted to hotspots recombination-rates yeast by jasontsai on 2008-07-27 10:32:29 as along with 9 people semrich abrozzi waszak Hans45 raiyar caseybrown djkt bpcusack madhadron
	Protein-protein recognition and interaction hot spots in an antigen-antibody complex: free energy decomposition identifies "efficient amino acids". [My Copy] Proteins, Vol. 67, No. 2. (1 May 2007), pp. 418-434. by Virginie Lafont, Michael Schaefer, Roland H. Stote, Danièle Altschuh, Annick Dejaegere posted to 2007 ab hotspots le ppi thermo by higueruelo on 2008-07-18 11:22:41 as along with 2 people flbarroso jteyra
	Hot-Spots-Guided Receptor-Based Pharmacophores (HS-Pharm): A Knowledge-Based Approach to Identify Ligand-Anchoring Atoms in Protein Cavities and Prioritize Structure-Based Pharmacophores [My Copy] Journal of Chemical Information and Modeling, Vol. 48, No. 7. (1 July 2008), pp. 1396-1410. by Caterina Barillari, Gilles Marcou, Didier Rognan posted to 2008 hotspots sm-prot by higueruelo on 2008-07-15 17:44:56 as along with 3 people xdeupi tbinbal superpyrin
	Biodiversity Hotspots and Major Tropical Wilderness Areas: Approaches to Setting Conservation Priorities [My Copy] Conservation Biology, Vol. 12, No. 3. (1998), pp. 516-520. by Russell A. Mittermeier, Norman Myers, Jorgen B. Thomsen, Gustavo A. B. da Fonseca, Silvio Olivieri posted to hotspots prioritization tropical by korhan on 2008-06-24 22:31:42 as along with 1 person mrobles
	KFC Server: interactive forecasting of protein interaction hot spots. [My Copy] Nucleic acids research (6 June 2008) by Steven J J. Darnell, Laura Legault, Julie C C. Mitchell posted to 2008 hotspots ppi by higueruelo on 2008-06-24 20:37:59 as along with 3 people qluo bicko marti
	Spatial chemical conservation of hot spot interactions in protein-protein complexes [My Copy] BMC Biology, Vol. 5 (09 October 2007), 43. by Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson posted to 2007 hotspots interface ppi xf by higueruelo on 2008-03-26 10:36:04 as along with 3 people bicko IrinaMoreira marti
	On hotspots and the use of indicators for reserve selection [My Copy] Trends in Ecology & Evolution, Vol. 13, No. 10. (1 October 1998), 409. by Andrew Balmford posted to hotspots indicators reserve-selection by korhan on 2008-03-17 01:23:10 as

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site_selection	30
endemism	25
ppi	22
fragments	19
prioritisation	19
birds	12
complementarity	12
mdb	12
pas	12
plants	12
richness	12
2009	10
biodiversity	10
cpds	9
design	9
interface	9
2007	8
wilderness	7
africa	6
agriculture	6
asia	6
biogeography	6
classic	6
europe	6
primates	6
review	6
species-area	6
threat_status	6
2008	5
docking	5
evolution	5
priorities	5
thermo	5
xf	5
alascanning	4
conservation	4
indicators	4
pharmacophores	4
recombination-rates	4
scale	4
wireless	4
80211	3
acid_rain	3
amphibians	3
australasia	3
bias	3
biomes	3
climate	3
climate_change	3
coral	3
criteria	3
deforestation	3
dispersal	3
distribution_models	3
ebas	3
ecosystem_services	3
edge_effects	3
extinction	3
finance	3
fish	3
frogspots	3
fynbos	3
gap_analysis	3
great_apes	3
hyde	3
latin_america	3
lepidoptera	3
luc	3
ma	3
nitrogen	3
north_america	3
p-median	3
pacific	3
paradigms	3
phylogeny	3
pollution	3
population_dynamics	3
portugal	3
prioritization	3
projection	3
rarity	3
recombination	3
regression	3
satellite	3
scenarios	3
south_africa	3
surrogacy	3
taxonomy	3
trees	3
tropical	3
tropics	3
vegetation	3
vegetation_classification	3
vegetation_models	3
vertebrates	3
viability	3
vulnerability	3
watersheds	3
carnivores	2
hydrophobicity	2

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