Tag illumina [191 articles] Export

Recent papers classified by the tag illumina.

	A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data [My Copy] Nucl. Acids Res. (18 November 2009), gkp942. by Nuno L. Barbosa-Morais, Mark J. Dunning, Shamith A. Samarajiwa, et al.Jeremy F. J. Darot, Matthew E. Ritchie, Andy G. Lynch, Simon Tavare posted to reannotation microarray illumina by ptrobajo on 2009-11-30 22:21:34 as
	Detection of Genomic Variation by Selection of a 9 Mb DNA Region and High Throughput Sequencing [My Copy] PLoS ONE, Vol. 4, No. 8. (17 August 2009), e6659. by Sergey I. Nikolaev, Christian Iseli, Andrew J. Sharp, et al.Daniel Robyr, Jacques Rougemont, Corinne Gehrig, Laurent Farinelli, Stylianos E. Antonarakis posted to variation solexa snp-calling rolexa resequencing illumina genome enrichment capture by n00c on 2009-11-30 21:05:35 as along with 2 people torfinnnome thegoose
	Evaluation of a new high-dimensional miRNA profiling platform [My Copy] BMC Medical Genomics, Vol. 2, No. 1. (27 August 2009), 57. by Julie Cunningham, Ann Oberg, Pedro Borralho, et al.Betsy Kren, Amy French, Liang Wang, Brian Bot, Bruce Morlan, Kevin Silverstein, Rod Staggs, Yan Zeng, Anne F. Lamblin, Christopher Hilker, Jian B. Fan, Clifford Steer, Stephen Thibodeau posted to mirna illumina benchmark by ptrobajo on 2009-11-30 15:23:08 as along with 3 people and 1 group heliopais fenghezi guhjy microRNA
	Improved protocols for the illumina genome analyzer sequencing system. [My Copy] Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.], Vol. Chapter 18 (July 2009) by Michael A. Quail, Harold Swerdlow, Daniel J. Turner posted to solexa protocol next-gen-seq illumina cluster-density by rschulz on 2009-11-25 09:29:14 as along with 2 people and 1 group manduca katholt Journal picks
	De novo sequencing of plant genomes using second-generation technologies [My Copy] Brief Bioinform, Vol. 10, No. 6. (1 November 2009), pp. 609-618. by Michael Imelfort, David Edwards posted to tools sequencing plant_genomes plant_genome_research illumina high-throughput genomics genome_sequence dna_sequencing bioinformatics assembly_tools by davidmam on 2009-11-20 15:48:32 as along with 6 people and 1 group jforment druvus bedo dakelley Jporci TRHvidsten Bioinformatics Core Service
	Statistical methods of background correction for Illumina BeadArray data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 6. (15 March 2009), pp. 751-757. by Yang Xie, Xinlei Wang, Michael Story posted to statistics microarray illumina bg_correction bayesian by shikin on 2009-11-17 15:45:44 as along with 8 people and 1 group jfr ptrobajo welliegirl rdiaz Stew heliopais dswan guhjy Bioinformatics - CRUK
	Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L) [My Copy] Genome Biology, Vol. 10, No. 11. (4 November 2009), R122. by Mingxiong Pang, Andrew Woodward, Vikram Agarwal, et al.Xueying Guan, Misook Ha, Vanitharani Ramachandran, Xuemei Chen, Barbara Triplett, David Stelly, Z. Jeffrey Chen posted to small_interfering_rnas sirna sequencing ngs illumina by davidmam on 2009-11-13 10:15:20 as along with 2 people natstreet samgj
	Improved base calling for the Illumina Genome Analyzer using machine learning strategies [My Copy] Genome Biology, Vol. 10, No. 8. (14 August 2009), R83. by Martin Kircher, Udo Stenzel, Janet Kelso posted to machine-learning illumina by seb1 on 2009-11-12 21:09:04 as along with 7 people and 1 group djkt reyez fpattyn danmaclean ppgardne n00c druvus Journal picks
	SNP detection for massively parallel whole-genome resequencing [My Copy] Genome Research, Vol. 19, No. 6. (6 June 2009), pp. 1124-1132. by Ruiqiang Li, Yingrui Li, Xiaodong Fang, et al.Huanming Yang, Jian Wang, Karsten Kristiansen, Jun Wang posted to variation illumina genome-research calling by seb1 on 2009-11-12 18:21:56 as along with 18 people torfinnnome hzoltan maren adijr greg jandot guhjy jonilaserson n00c druvus reyez sandfire jasontsai djkt sameersoi natstreet jbhiatt GeeSharpMinor
	Illumina WG-6 BeadChip strips should be normalized separately [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 372. by Wei Shi, Ashish Banerjee, Matthew Ritchie, Steve Gerondakis, Gordon Smyth posted to normalization microarray marcel illumina by ptrobajo on 2009-11-11 20:04:55 as along with 2 people heliopais shikin
	TileQC: A system for tile-based quality control of Solexa data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 250. by Peter Dolan, Dee Denver posted to tileqc tile solexa quality illumina by n00c on 2009-10-30 21:52:49 as along with 7 people heliopais magusina neils reyez mdimon slevy03 caseybrown
	Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia--a comparative study of four differently designed, high resolution microarray platforms. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 8. (August 2008), pp. 697-711. by Rebeqa Gunnarsson, Johan Staaf, Mattias Jansson, et al.Anne Marie M. Ottesen, Hanna Göransson, Ulrika Liljedahl, Ulrik Ralfkiaer, Mahmoud Mansouri, Anne Mette M. Buhl, Karin Ekström E. Smedby, Henrik Hjalgrim, Ann-Christine C. Syvänen, Ake Borg, Anders Isaksson, Jesper Jurlander, Gunnar Juliusson, Richard Rosenquist posted to snp illumina cnv affy by shikin on 2009-10-29 18:51:56 as along with 1 person jfr
	Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (02 October 2008), 409. by Johan Staaf, Johan Vallon-Christersson, David Lindgren, et al.Gunnar Juliusson, Richard Rosenquist, Mattias Höglund, Ake Borg, Markus Ringnér posted to snp normalization illumina by shikin on 2009-10-28 17:58:16 as along with 1 person vplagnol
	High-throughput SNP genotyping on universal bead arrays. [My Copy] Mutation research, Vol. 573, No. 1-2. (3 June 2005), pp. 70-82. by Richard Shen, Jian-Bing B. Fan, Derek Campbell, et al.Weihua Chang, Jing Chen, Dennis Doucet, Jo Yeakley, Marina Bibikova, Eliza Wickham Garcia, Celeste McBride, Frank Steemers, Francisco Garcia, Bahram G. Kermani, Kevin Gunderson, Arnold Oliphant posted to snp microarray illumina by shikin on 2009-10-28 16:31:07 as along with 1 person stsaft
	High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays. [My Copy] Genome research, Vol. 17, No. 3. (31 March 2007), pp. 368-376. by Jan Oosting, Esther H. Lips, Ronald van Eijk, et al.Paul H. Eilers, Károly Szuhai, Cisca Wijmenga, Hans Morreau, Tom van Wezel posted to snp illumina by shikin on 2009-10-28 14:30:41 as along with 2 people jfr shigepong
	High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping. [My Copy] Genome research, Vol. 16, No. 9. (September 2006), pp. 1136-1148. by Daniel A. Peiffer, Jennie M. Le, Frank J. Steemers, et al.Weihua Chang, Tony Jenniges, Francisco Garcia, Kirt Haden, Jiangzhen Li, Chad A. Shaw, John Belmont, Sau Wai W. Cheung, Richard M. Shen, David L. Barker, Kevin L. Gunderson posted to snp microarray illumina cnv by shikin on 2009-10-27 17:24:03 as along with 3 people baizhang jfr jackjackjjj
	R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2621-2623. by Matthew E. Ritchie, Benilton S. Carvalho, Kurt N. Hetrick, Simon Tavaré, Rafael A. Irizarry posted to illumina by carolep on 2009-10-26 11:05:04 as along with 7 people jsatkosk daforerog djkt shikin dswan rdiaz torfinnnome
	Computation of Rank and Select Functions on Hierarchical Binary String and Its Application to Genome Mapping Problems for Short-Read DNA Sequences [My Copy] Journal of Computational Biology (22 September 2009), 090922085727012. by Kouichi Kimura, Yutaka Suzuki, Sumio Sugano, Asako Koike posted to solexa short_read jcb illumina alignment by seb1 on 2009-10-23 19:25:10 as along with 3 people justinhjohnson n00c druvus
	Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing [My Copy] Nature Genetics, Vol. 40, No. 12. (02 November 2008), pp. 1413-1415. by Qun Pan, Ofer Shai, Leo J. Lee, Brendan J. Frey, Benjamin J. Blencowe posted to transcriptome splicing sequencing illumina alternative by torfinnnome on 2009-10-22 15:16:38 as along with 20 people hzoltan n00c ericrpaquet jonilaserson ThomasDOtto giovanni frohike fenghezi jfr zxmon21 jmcq poschm wimufi xingxu inesdesantiago jbhiatt rschulz djkt dchughes GeeSharpMinor
	Slider - Maximum use of probability information for alignment of short sequence reads and SNP detection [My Copy] Bioinformatics, Vol. 25, No. 1. (30 October 2008), pp. btn565-13. by Nawar Malhis, Yaron Butterfield, Martin Ester, Steven J. M. Jones posted to software snp short-read sequencing probability mapping illumina alignment by torfinnnome on 2009-10-19 16:06:43 as along with 8 people darian seb1 orzenil jsatkosk n00c mdimon druvus jmeppley
	Characterizing natural variation using next-generation sequencing technologies [My Copy] Trends in Genetics, Vol. 25, No. 10. (02 October 2009), pp. 463-471. by Yoav Gilad, Jonathan K. Pritchard, Kevin Thornton posted to variation solid solexa roche review mosaik illumina false-positive comparison abi 454 by n00c on 2009-10-19 16:04:09 as along with 5 people and 1 group operon jwfoley skembel djkt natstreet iSEEM
	New technologies for ultra-high throughput genotyping in plants. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 513 (2009), pp. 19-39. by Nikki Appleby, David Edwards, Jacqueline Batley posted to illumina genotyping by orzenil on 2009-10-16 00:28:12 as along with 1 person katholt
	Importance of randomization in microarray experimental designs with Illumina platforms. [My Copy] Nucleic acids research, Vol. 37, No. 17. (1 September 2009), pp. 5610-5618. by Ricardo A. Verdugo, Christian F. Deschepper, Gloria Muñoz, Daniel Pomp, Gary A. Churchill posted to illumina experimental design by rdiaz on 2009-10-15 18:04:55 as along with 3 people and 2 groups davidalee yaredo Stew Orengo Group Journal Picks Bioinformatics - CRUK
	Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium. [My Copy] Genome biology, Vol. 10, No. 9. (25 September 2009), R102. by Richard A. Stabler, Miao He, Lisa Dawson, et al.Melissa Martin, Esmeralda Valiente, Craig Corton, Trevor D. Lawley, Mohammed Sebaihia, Michael A. Quail, Graham Rose, Dale N. Gerding, Maryse Gibert, Michel R. Popoff, Julian Parkhill, Gordon Dougan, Brendan W. Wren posted to variation sequencing sanger illumina evolution assembly 454 by sandfire on 2009-10-13 20:44:54 as along with 4 people gwenknight jlmoir jecouk druvus
	BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing [My Copy] Genome Research, Vol. 19, No. 10. (6 October 2009), pp. 1884-1895. by Wei-Chun Kao, Kristian Stevens, Yun S. Song posted to sequencing ml illumina genotype by lp2 on 2009-10-09 09:54:51 as along with 13 people and 2 groups heliopais dakelley megraw rdiaz torfinnnome djkt n00c farhat druvus polivares stajich fpattyn jbhiatt BergmanLab Mycology
	Next-generation tag sequencing for cancer gene expression profiling [My Copy] Genome Research, Vol. 19, No. 10. (10 October 2009), pp. 1825-1835. by A. Sorana Morrissy, Ryan D. Morin, Allen Delaney, et al.Thomas Zeng, Helen McDonald, Steven Jones, Yongjun Zhao, Martin Hirst, Marco A. Marra posted to tag solexa profiling illumina gene expression by Stew to the group Bioinformatics - CRUK on 2009-10-08 14:18:17 as along with 4 people hzoltan torfinnnome guhjy fpattyn
	Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution. [My Copy] Nature, Vol. 461, No. 7265. (8 October 2009), pp. 809-813. by Sohrab P. Shah, Ryan D. Morin, Jaswinder Khattra, et al.Leah Prentice, Trevor Pugh, Angela Burleigh, Allen Delaney, Karen Gelmon, Ryan Guliany, Janine Senz, Christian Steidl, Robert A. Holt, Steven Jones, Mark Sun, Gillian Leung, Richard Moore, Tesa Severson, Greg A. Taylor, Andrew E. Teschendorff, Kane Tse, Gulisa Turashvili, Richard Varhol, René L. Warren, Peter Watson, Yongjun Zhao, Carlos Caldas, David Huntsman, Martin Hirst, Marco A. Marra, Samuel Aparicio posted to transcriptome snp illumina genome evolution cancer breast by torfinnnome on 2009-10-08 08:39:57 as along with 13 people and 2 groups misonneh pst jwfoley stubrown chvlyl giovenko frohike brianb Zephyrus jsuchit mkiyer merpublic djkt Chinnaiyan Lab Journal picks
	Sequencing of natural strains of Arabidopsis thaliana with short reads. [My Copy] Genome research, Vol. 18, No. 12. (29 December 2008), pp. 2024-2033. by Stephan Ossowski, Korbinian Schneeberger, Richard M. Clark, Christa Lanz, Norman Warthmann, Detlef Weigel posted to solexa snp-calling short-read shore sequencing quality pipeline maq illumina error-model arabidopsis by n00c on 2009-10-07 18:05:08 as along with 11 people and 2 groups seninp APRegier sameersoi dandaman jasontsai stajich xwbcn natstreet druvus GustavoLacerda semrich Mycology Notre Dame Bioinformatics
	Model-based variance-stabilizing transformation for Illumina microarray data. [My Copy] Nucleic acids research, Vol. 36, No. 2. (4 February 2008), gkm1075. by Simon M. Lin, Pan Du, Wolfgang Huber, Warren A. Kibbe posted to normalization illumina by shikin on 2009-10-02 11:15:26 as along with 5 people ptrobajo heliopais jfr neveaire guhjy
	lumi: a pipeline for processing Illumina microarray. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008), pp. 1547-1548. by Pan Du, Warren A. Kibbe, Simon M. Lin posted to r qc normalization illumina by shikin on 2009-10-02 09:48:59 as along with 6 people daforerog ptrobajo heliopais jfr guhjy Stew
	Mining SNPs from DNA Sequence Data; Computational Approaches to SNP Discovery and Analysis [My Copy] Single Nucleotide Polymorphisms, Vol. 578 (2009), pp. 73-91. by Jan Oeveren, Antoine Janssen posted to software snps review illumina 454 by sandfire on 2009-10-01 17:48:22 as along with 2 people darian n00c
	De novo transcriptome assembly with ABySS [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2872-2877. by Inanc Birol, Shaun D. Jackman, Cydney B. Nielsen, et al.Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Doug E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones posted to velvet software_abyss sequence_coverage illumina by ramonvidal on 2009-09-29 16:43:53 as along with 9 people dswan dakelley torfinnnome TRHvidsten rtogawa stubrown darshan GustavoLacerda druvus
	Comparison of next generation sequencing technologies for transcriptome characterization. [My Copy] BMC genomics, Vol. 10, No. 1. (1 August 2009), 347. by P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, et al.Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr, Lynn P. Tomsho, Yi Hu, John E. Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi Altman, Claude W. dePamphilis posted to transcriptome technology solid solexa rna-seq illumina comparison abi 454 by n00c on 2009-09-29 16:17:26 as along with 19 people and 4 groups hzoltan daveGerrard daforerog feeldead debasis jgill mqbphcw3 sotacam GustavoLacerda adamjamesreid dswan mlog gwallau ewilban1 ThomasDOtto jasontsai polivares natstreet druvus Journal picks Bioinformatics LabDros BergmanLab
	Application of 'next-generation' sequencing technologies to microbial genetics. [My Copy] Nature reviews. Microbiology, Vol. 7, No. 4. (April 2009), pp. 287-296. by D. MacLean, J. D. Jones, D. J. Studholme posted to sequencing review illumina high_throughput 454 by sandfire on 2009-09-29 11:50:01 as along with 2 people shabhonam burak
	Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes [My Copy] Nat Meth, Vol. 6, No. 4. (15 March 2009), pp. 291-295. by Iwanka Kozarewa, Zemin Ning, Michael A. Quail, Mandy J. Sanders, Matthew Berriman, Daniel J. Turner posted to uneven_distribution sequencing pcr_bias next_generation library_preparation illumina dna_sequences amplification by mkiyer on 2009-09-29 00:51:36 as along with 6 people guhjy inesdesantiago natstreet athma druvus jbhiatt
	Accurate whole human genome sequencing using reversible terminator chemistry. [My Copy] Nature, Vol. 456, No. 7218. (6 November 2008), pp. 53-59. by David R. Bentley, Shankar Balasubramanian, Harold P. Swerdlow, et al.Geoffrey P. Smith, John Milton, Clive G. Brown, Kevin P. Hall, Dirk J. Evers, Colin L. Barnes, Helen R. Bignell, Jonathan M. Boutell, Jason Bryant, Richard J. Carter, R. Keira Cheetham, Anthony J. Cox, Darren J. Ellis, Michael R. Flatbush, Niall A. Gormley, Sean J. Humphray, Leslie J. Irving, Mirian S. Karbelashvili, Scott M. Kirk, Heng Li, Xiaohai Liu, Klaus S. Maisinger, Lisa J. Murray, Bojan Obradovic, Tobias Ost, Michael L. Parkinson, Mark R. Pratt, Isabelle M. J. Rasolonjatovo, Mark T. Reed, Roberto Rigatti, Chiara Rodighiero, Mark T. Ross, Andrea Sabot, Subramanian V. Sankar, Aylwyn Scally, Gary P. Schroth, Mark E. Smith, Vincent P. Smith, Anastassia Spiridou, Peta E. Torrance, Svilen S. Tzonev, Eric H. Vermaas, Klaudia Walter, Xiaolin Wu, Lu Zhang, Mohammed D. Alam, Carole Anastasi, Ify C. Aniebo, David M. D. Bailey, Iain R. Bancarz, Saibal Banerjee, Selena G. Barbour, Primo A. Baybayan, Vincent A. Benoit, Kevin F. Benson, Claire Bevis, Phillip J. Black, Asha Boodhun, Joe S. Brennan, John A. Bridgham, Rob C. Brown, Andrew A. Brown, Dale H. Buermann, Abass A. Bundu, James C. Burrows, Nigel P. Carter, Nestor Castillo, Maria Chiara, Simon Chang, R. Neil Cooley, Natasha R. Crake, Olubunmi O. Dada, Konstantinos D. Diakoumakos, Belen Dominguez-Fernandez, David J. Earnshaw, Ugonna C. Egbujor, David W. Elmore, Sergey S. Etchin, Mark R. Ewan, Milan Fedurco, Louise J. Fraser, Karin V. Fuentes Fajardo, W. Scott Furey, David George, Kimberley J. Gietzen, Colin P. Goddard, George S. Golda, Philip A. Granieri, David E. Green, David L. Gustafson, Nancy F. Hansen, Kevin Harnish, Christian D. Haudenschild, Narinder I. Heyer, Matthew M. Hims, Johnny T. Ho, Adrian M. Horgan, Katya Hoschler, Steve Hurwitz, Denis V. Ivanov, Maria Q. Johnson, Terena James, T. A. Huw Jones, Gyoung-Dong Kang, Tzvetana H. Kerelska, Alan D. Kersey, Irina Khrebtukova, Alex P. Kindwall, Zoya Kingsbury, Paula I. Kokko-Gonzales, Anil Kumar, Marc A. Laurent, Cynthia T. Lawley, Sarah E. Lee, Xavier Lee, Arnold K. Liao, Jennifer A. Loch, Mitch Lok, Shujun Luo, Radhika M. Mammen, John W. Martin, Patrick G. McCauley, Paul McNitt, Parul Mehta, Keith W. Moon, Joe W. Mullens, Taksina Newington, Zemin Ning, Bee L. Ng, Sonia M. Novo, Michael J. O'Neill, Mark A. Osborne, Andrew Osnowski, Omead Ostadan, Lambros L. Paraschos, Lea Pickering, Andrew C. Pike, Alger C. Pike, D. Chris Pinkard, Daniel P. Pliskin, Joe Podhasky, Victor J. Quijano, Come Raczy, Vicki H. Rae, Stephen R. Rawlings, Ana C. Rodriguez, Phyllida M. Roe, John Rogers, Maria C. Rogert Bacigalupo, Nikolai Romanov, Anthony Romieu, Rithy K. Roth, Natalie J. Rourke, Silke T. Ruediger, Eli Rusman, Raquel M. Sanches-Kuiper, Martin R. Schenker, Josefina M. Seoane, Richard J. Shaw, Mitch K. Shiver, Steven W. Short, Ning L. Sizto, Johannes P. Sluis, Melanie A. Smith, Jean Ernest Sohna Sohna, Eric J. Spence, Kim Stevens, Neil Sutton, Lukasz Szajkowski, Carolyn L. Tregidgo, Gerardo Turcatti, Stephanie vandeVondele, Yuli Verhovsky, Selene M. Virk, Suzanne Wakelin, Gregory C. Walcott, Jingwen Wang, Graham J. Worsley, Juying Yan, Ling Yau, Mike Zuerlein, Jane Rogers, James C. Mullikin, Matthew E. Hurles, Nick J. McCooke, John S. West, Frank L. Oaks, Peter L. Lundberg, David Klenerman, Richard Durbin, Anthony J. Smith posted to yoruba tpgp solexa resequencing maq individual-human-genome illumina genome eland by n00c on 2009-09-28 15:30:03 as along with 29 people and 1 group hzoltan rshe pst gbenson giovenko clearbluespring xingxu dna austin jessopher daforerog vmsr jfr azazello nuin usagi-kirin Archaeogenetics malcook psique tsherig jbhiatt pengchy reyez jmcq inesdesantiago ojabado caseybrown pkonings djkt SIMR bioinformatics
	Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data. [My Copy] Biostatistics (Oxford, England), Vol. 8, No. 2. (22 April 2007), pp. 485-499. by Benilton Carvalho, Henrik Bengtsson, Terence P. Speed, Rafael A. Irizarry posted to snp illumina affy by shikin on 2009-09-28 13:25:51 as along with 4 people daforerog GeeSharpMinor guhjy jfr
	galign: A Tool for Rapid Genome Polymorphism Discovery [My Copy] PLoS ONE, Vol. 4, No. 9. (25 September 2009), e7188. by Shai Shaham posted to snp short-read illumina discovery annotation by torfinnnome on 2009-09-28 09:29:22 as along with 7 people and 1 group maren scmelton natstreet Benedikt_Zimmermann n00c druvus stajich Mycology
	Next-Generation Sequencing Methods: Impact of Sequencing Accuracy on SNP Discovery [My Copy] Single Nucleotide Polymorphisms (2009), pp. 95-111. by Eugene Y. Chan posted to solexa snp-discovery snp resequencing repeats methods illumina helicos by n00c on 2009-09-26 01:49:02 as
	Next-generation DNA sequencing methods. [My Copy] Annual review of genomics and human genetics, Vol. 9, No. 1. (19 June 2008), pp. 387-402. by Elaine R. Mardis posted to solid solexa sequencing illumina abi 454 by n00c on 2009-09-25 17:02:13 as along with 15 people rshe heliopais daforerog stsaft natstreet druvus Vincent_Rouilly Annab floatingpoint yupu LorraineThompson giovenko aheilbut reyez guhjy
	Enhanced identification and biological validation of differential gene expression via Illumina whole-genome expression arrays through the use of the model-based background correction methodology. [My Copy] Nucleic acids research, Vol. 36, No. 10. (1 June 2008), e58. by Liang-Hao H. Ding, Yang Xie, Seongmi Park, Guanghua Xiao, Michael D. Story posted to illumina background_correction by shikin on 2009-09-25 15:38:50 as along with 4 people jfr ptrobajo inesdesantiago guhjy
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to next_generation illumina chip-seq bayesian by druvus on 2009-09-24 15:44:13 as along with 11 people and 4 groups Vincent_Rouilly tonamswish dswan fenghezi inesdesantiago idonaldson polivares mkiyer stajich humburg rschulz Bioinformatics JLab BergmanLab Mycology
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted to sequencing next-gen mapping_algorithms illumina dna bioinformatics algorithms 454 by behindtherabbit on 2009-09-22 16:33:54 as along with 19 people and 4 groups cthachuk hzoltan darian nuin fenghezi jandot walshtp torfinnnome stubrown dswan polivares orzenil natstreet djkt jmcq n00c heliopais ppgardne druvus Bioinformatics BergmanLab iSEEM Journal picks
	Relative power and sample size analysis on gene expression profiling data. [My Copy] BMC genomics, Vol. 10, No. 1. (2009), 439. by M. van Iterson, P. A. 't Hoen, P. Pedotti, et al.G. J. Hooiveld, J. T. den Dunnen, G. J. van Ommen, J. M. Boer, R. X. Menezes posted to solexa methods illumina gene expression experimental_design by mkiyer on 2009-09-20 01:33:08 as along with 6 people and 1 group manduca dswan Stew fenghezi rdiaz barriot Bioinformatics - CRUK
	TagDust--a program to eliminate artifacts from next generation sequencing data [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2839-2840. by Timo Lassmann, Yoshihide Hayashizaki, Carsten O. Daub posted to sequencing illumina filtering artifacts by torfinnnome on 2009-09-16 20:59:57 as along with 20 people and 1 group orzenil hzoltan chvlyl operon kshameer djkt rtogawa seb1 idonaldson nuin debasis jgill GeeSharpMinor sotacam walshtp heliopais jandot n00c rschulz druvus Journal picks
	Microarray-based multicycle-enrichment of genomic subsets for targeted next-generation sequencing [My Copy] Genome Research, Vol. 19, No. 9. (28 September 2009), pp. 1616-1621. by Daniel Summerer, Haiguo Wu, Bettina Haase, et al.Yang Cheng, Nadine Schracke, Cord F. StÃ¤hler, Mark S. Chee, Peer F. StÃ¤hler, Markus Beier posted to sequencing microarray illumina enrichment by torfinnnome on 2009-09-16 10:35:16 as along with 4 people xingxu guhjy jbhiatt natstreet
	De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R94. by Scott DiGuistini, Nancy Liao, Darren Platt, et al.Gordon Robertson, Michael Seidel, Simon Chan, T. Roderick Docking, Inanc Birol, Robert Holt, Martin Hirst, Elaine Mardis, Marco Marra, Richard Hamelin, Jorg Bohlmann, Colette Breuil, Steven Jones posted to solexa sequencing illumina denovo assembler 454 by sujaikumar on 2009-09-14 10:07:52 as along with 10 people and 2 groups orzenil GustavoLacerda sotacam gillianturgeon natstreet druvus jamselem kiekyon ppgardne stajich Journal picks Mycology
	Massively parallel exon capture and library-free resequencing across 16 genomes [My Copy] Nat Meth, Vol. 6, No. 5. (6 May 2009), pp. 315-316. by Emily H. Turner, Choli Lee, Sarah B. Ng, Deborah A. Nickerson, Jay Shendure posted to sequencing illumina exome_capture by xingxu on 2009-09-10 21:05:01 as along with 6 people and 1 group torfinnnome jandot fenghezi guhjy jdbowes sleepingcell Journal picks
	Methods for Genomic Partitioning [My Copy] Annual Review of Genomics and Human Genetics, Vol. 10, No. 1. (16 July 2009), pp. 263-284. by Emily H. Turner, Sarah B. Ng, Deborah A. Nickerson, Jay Shendure posted to sequencing illumina exome_capture by xingxu on 2009-09-10 21:04:53 as along with 3 people and 1 group scmelton jandot jbhiatt Journal picks
	Rapid whole-genome mutational profiling using next-generation sequencing technologies [My Copy] Genome Research, Vol. 18, No. 10. (4 October 2008), pp. 1638-1642. by Douglas R. Smith, Aaron R. Quinlan, Heather E. Peckham, et al.Kathryn Makowsky, Wei Tao, Betty Woolf, Lei Shen, William F. Donahue, Nadeem Tusneem, Michael P. Stromberg, Donald A. Stewart, Lu Zhang, Swati S. Ranade, Jason B. Warner, Clarence C. Lee, Brittney E. Coleman, Zheng Zhang, Stephen F. McLaughlin, Joel A. Malek, Jon M. Sorenson, Alan P. Blanchard, Jarrod Chapman, David Hillman, Feng Chen, Daniel S. Rokhsar, Kevin J. McKernan, Thomas W. Jeffries, Gabor T. Marth, Paul M. Richardson posted to solid solexa snp-discovery snp-calling resequencing mutations mosaik illumina gigabayes coverage abi 454 by n00c on 2009-09-03 16:10:17 as along with 7 people robsyme druvus skoddet yupu jfr jmcq GeeSharpMinor

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sequencing	133
solexa	117
genome-analyzer	75
microarray	51
analyzer	43
454	25
assembly	19
software	18
r	15
snp	15
solid	14
expression	13
short-read	13
marcel	12
genome	11
analysis	10
bioinformatics	10
normalization	10
rna-seq	9
transcriptome	9
beadarray	8
genotyping	8
ma	8
review	8
affy	7
bioconductor	7
ffpe	7
gene	7
next_generation	7
nextgen	7
resequencing	7
statistics	7
comparison	6
methods	6
microrna	6
rna	6
abi	5
affymetrix	5
background	5
cnv	5
correction	5
dna	5
variation	5
application	4
base-calling	4
bayesian	4
data	4
genomics	4
low_level	4
mapping	4
mirna	4
pipeline	4
profiling	4
quality	4
sanger	4
snps	4
algorithm	3
alignment	3
bacteria	3
blood	3
calling	3
chip	3
copy-number	3
decoding	3
design	3
evolution	3
experimental	3
high-throughput	3
method	3
microarray_technology	3
microarrays	3
next-gen	3
next-gen-seq	3
next-generation-sequencing	3
ngs	3
only	3
sirna	3
snp-calling	3
tool	3
tools	3
velvet	3
alternative	2
arrays	2
barcode	2
base_calling	2
cluster-density	2
eland	2
exome_capture	2
informatics	2
machine-learning	2
mosaik	2
newest	2
pcr	2
protocol	2
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rolexa	2
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smallrna	2
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