Tag indel [162 articles] Export

Recent papers classified by the tag indel.

	Genome-wide identification of human functional DNA using a neutral indel model. [My Copy] PLoS computational biology, Vol. 2, No. 1. (13 January 2006) by Gerton Lunter, Chris P. Ponting, Jotun Hein posted to modeling indel human genomics bioinformatics by timflutre on 2009-11-10 14:01:49 as along with 12 people and 2 groups gjuggler nklee aprasad eckart_bindewald eweaver lhonigberg acidwizard juliettecolinas bpcusack Stew cisevol mailund EisenLab cis-regulatory-evolution
	A Macaque's-Eye View of Human Insertions and Deletions: Differences in Mechanisms [My Copy] PLoS Comput Biol, Vol. 3, No. 9. (14 September 2007), e176. by Erika M. Kvikstad, Svitlana Tyekucheva, Francesca Chiaromonte, Kateryna D. Makova posted to statistics phylogeny indel human chimpanzee bioinformatics alignment by timflutre on 2009-11-10 12:58:06 as along with 4 people and 1 group Iden-J_GluR aprasad djkt cisevol cis-regulatory-evolution
	inGAP: an integrated next-generation genome analysis pipeline [My Copy] Bioinformatics (30 October 2009), btp615. by Ji Qi, Fangqing Zhao, Anne Buboltz, Stephan C. Schuster posted to software snp ngs indel by natstreet on 2009-11-04 07:22:01 as along with 4 people jasontsai n00c heliopais druvus
	Indel-associated mutation rate varies with mating system in flowering plants. [My Copy] Molecular biology and evolution (13 October 2009) by Jesse D. Hollister, Jeffrey Ross-Ibarra, Brandon S. Gaut posted to substitution_rate plants indel inde_rate evolution by aprasad on 2009-10-21 23:06:02 as
	ABWGAT: Anchor Based Whole Genome Analysis Tool. [My Copy] Bioinformatics (14 October 2009), btp587. by Sarbashis Das, Anchal Vishnoi, Alok Bhattacharya posted to indel genome alignment by druvus on 2009-10-15 10:51:55 as along with 1 person natstreet
	Fast Statistical Alignment [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000392. by Robert K. Bradley, Adam Roberts, Michael Smoot, et al.Sudeep Juvekar, Jaeyoung Do, Colin Dewey, Ian Holmes, Lior Pachter posted to indel modeling bioinformatics alignment algorithm by timflutre on 2009-10-13 08:16:49 as along with 18 people and 1 group seb1 rdowell natstreet n00c yylin aprasad Gorzomagnificent guhjy dakelley reyez rec3141 farhat operon bmduggan nuin AlexBateman djkt druvus Journal picks
	Metabolic Adaptation after Whole Genome Duplication [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2441-2453. by Milan J. A. van Hoek, Paulien Hogeweg posted to yeast sysbio metabolism indel evolution duplication by djkt on 2009-10-12 17:56:15 as along with 1 person tomhebbron
	Genomewide Association between Insertions/Deletions and the Nucleotide Diversity in Bacteria [My Copy] Mol Biol Evol, Vol. 26, No. 10. (1 October 2009), pp. 2353-2361. by Liucun Zhu, Qiang Wang, Ping Tang, Hitoshi Araki, Dacheng Tian posted to snp indel bacteria by druvus on 2009-10-12 14:41:50 as along with 2 people operon aprasad
	Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2865-2871. by Kai Ye, Marcel H. Schulz, Quan Long, Rolf Apweiler, Zemin Ning posted to paired-end ngs indel by natstreet on 2009-09-26 14:05:48 as along with 5 people torfinnnome dakelley n00c druvus vplagnol
	Positive Selection of Tyrosine Loss in Metazoan Evolution [My Copy] Science, Vol. 325, No. 5948. (25 September 2009), pp. 1686-1688. by Chris S. Tan, Adrian Pasculescu, Wendell A. Lim, Tony Pawson, Gary D. Bader, Rune Linding posted to signalling indel evolution by djkt on 2009-09-25 17:25:17 as along with 6 people and 2 groups memerman nzm arjun_citeulike bpcusack jjray stajich Journal picks Mycology
	BreakDancer: an algorithm for high-resolution mapping of genomic structural variation [My Copy] Nature Methods, Vol. 6, No. 9. (09 August 2009), pp. 677-681. by Ken Chen, John W. Wallis, Michael D. McLellan, et al.David E. Larson, Joelle M. Kalicki, Craig S. Pohl, Sean D. McGrath, Michael C. Wendl, Qunyuan Zhang, Devin P. Locke, Xiaoqi Shi, Robert S. Fulton, Timothy J. Ley, Richard K. Wilson, Li Ding, Elaine R. Mardis posted to paired-end ngs indel by natstreet on 2009-09-22 12:54:29 as along with 12 people and 1 group Leaflet heliopais stubrown dakelley fenghezi daed druvus sitalange qayub gdb jasontsai danmaclean Journal picks
	MoDIL: detecting small indels from clone-end sequencing with mixtures of distributions [My Copy] Nat Meth, Vol. 6, No. 7. (31 May 2009), pp. 473-474. by Seunghak Lee, Fereydoun Hormozdiari, Can Alkan, Michael Brudno posted to next_generation indel by druvus on 2009-09-21 12:55:29 as along with 3 people and 1 group ongenetics fpattyn dakelley Neuroblastoma
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted to sequencing indel alignment by djkt to the group iSEEM on 2009-09-11 16:28:11 as along with 19 people and 3 groups cthachuk hzoltan darian nuin fenghezi behindtherabbit jandot walshtp torfinnnome stubrown dswan polivares orzenil natstreet jmcq n00c heliopais ppgardne druvus Bioinformatics BergmanLab Journal picks
	Mobile elements create structural variation: Analysis of a complete human genome [My Copy] Genome Research, Vol. 19, No. 9. (13 September 2009), pp. 1516-1526. by Jinchuan Xing, Yuhua Zhang, Kyudong Han, et al.Abdel H. Salem, Shurjo K. Sen, Chad D. Huff, Qiong Zhou, Ewen F. Kirkness, Samuel Levy, Mark A. Batzer, Lynn B. Jorde posted to sv repeats indel human by djkt on 2009-09-02 23:32:04 as along with 10 people and 1 group operon n00c sameersoi APRegier dchughes fenghezi jandot Dulcinea natstreet JustinCrocker Journal picks
	Phylogenetic inference under varying proportions of indel-induced alignment gaps. [My Copy] BMC evolutionary biology, Vol. 9, No. 1. (23 August 2009), 211. by Bhakti Dwivedi, Sudhindra R. Gadagkar posted to simulation phylogenetics indel gaps alignment_error by aprasad on 2009-09-02 19:42:51 as along with 1 person and 1 group ppgardne Journal picks
	Incorporating indel information into phylogeny estimation for rapidly emerging pathogens [My Copy] BMC Evolutionary Biology, Vol. 7, No. 1. (14 March 2007), 40. by Benjamin Redelings, Marc Suchard posted to indel phylogeny bioinformatics alignment by timflutre on 2009-08-23 10:39:53 as along with 5 people and 1 group druvus operon aprasad dpollard stajich EisenLab
	Statistical alignment based on fragment insertion and deletion models [My Copy] Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 490-499. by Dirk Metzler posted to indel phylogeny bioinformatics alignment by timflutre on 2009-08-23 10:38:06 as along with 1 person druvus
	Biological Sequence Simulation for Testing Complex Evolutionary Hypotheses: indel-Seq-Gen Version 2.0 [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2581-2593. by Cory L. Strope, Kevin Abel, Stephen D. Scott, Etsuko N. Moriyama posted to evolution indel methods simulation tools by aprasad on 2009-08-09 13:25:49 as
	The tcf17 gene at chromosome 5q is not involved in the development of conventional renal cell carcinoma. [My Copy] International journal of cancer. Journal international du cancer, Vol. 86, No. 6. (15 June 2000), pp. 806-810. by P. Bugert, T. Pesti, G. Kovacs posted to indel zinc_finger by absterga on 2009-08-05 19:10:16 as
	Rapid Evolution of Sex Pheromone-Producing Enzyme Expression in Drosophila [My Copy] PLoS Biol, Vol. 7, No. 8. (4 August 2009), e1000168. by Troy R. Shirangi, Héloïse D. Dufour, Thomas M. Williams, Sean B. Carroll posted to convergent_evolution drosophila evolution gene_expression gene_loss gene_regulation indel mutation pheremone selection_sexual speciation by biomcgary on 2009-08-04 17:42:48 as along with 2 people and 1 group daveGerrard djkt BergmanLab
	Evolutionary flexibility of protein complexes [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009), 155. by Michael Seidl, Jorg Schultz posted to duplication evolution indel proteins by djkt to the group iSEEM on 2009-07-27 18:06:39 as along with 1 person phoenixzxl
	MCALIGN2: Faster, accurate global pairwise alignment of non-coding DNA sequences based on explicit models of indel evolution [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (08 June 2006), 292. by Jun Wang, Peter Keightley, Toby Johnson posted to indel algorithm bioinformatics evolution hmm modeling noncoding by timflutre on 2009-07-20 15:34:36 as along with 6 people and 1 group druvus gjuggler Ayest dpollard papamicd bozdagd EisenLab
	Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes. [My Copy] Nature, Vol. 455, No. 7209. (4 September 2008), pp. 105-108. by D. Tian, Q. Wang, P. Zhang, et al.H. Araki, S. Yang, M. Kreitman, T. Nagylaki, R. Hudson, J. Bergelson, J. Q. Chen posted to biased_mutation heterozygosity indel mutation_hotspot mutation_rate point_mutation by biomcgary on 2009-07-17 18:58:14 as along with 9 people and 1 group Annab aprasad dakelley zwang psique djkt caseybrown bpcusack gjuggler parkinson's disease references
	Deletional Bias across the Three Domains of Life [My Copy] Genome Biol Evol, Vol. 2009, No. 0. (10 July 2009), pp. 145-152. by Chih-Horng Kuo, Howard Ochman posted to chromosome drift evolution indel by djkt to the group iSEEM on 2009-07-14 20:53:46 as along with 1 person operon
	DNA indels in coding regions reveal selective constraints on protein evolution in the human lineage. [My Copy] BMC evolutionary biology, Vol. 7, No. 1. (12 October 2007), 191. by N. de la Chaux, P. W. Messer, P. F. Arndt posted to annotation evolution human indel selection by djkt on 2009-07-13 17:03:00 as along with 2 people gjuggler PetrovLab
	PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data [My Copy] Genome Research, Vol. 17, No. 5. (May 2007), pp. 659-666. by Ken Chen, Michael D. Mclellan, Li Ding, et al.Michael C. Wendl, Yumi Kasai, Richard K. Wilson, Elaine R. Mardis posted to indel polyscan resequencing snp software by n00c on 2009-07-07 06:19:57 as along with 4 people natstreet druvus guhjy ohara
	Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes [My Copy] Genome Research, Vol. 19, No. 7. (15 July 2009), pp. 1270-1278. by Fereydoun Hormozdiari, Can Alkan, Evan E. Eichler, S. Cenk Sahinalp posted to evolution indel sequencing sv by djkt on 2009-07-01 22:21:57 as along with 17 people hzoltan n00c rdiaz aezrin jandot GustavoLacerda guhjy jessopher megraw jonilaserson chrisamiller dandaman sameersoi dakelley APRegier natstreet druvus
	Ride the wavelet: A multiscale analysis of genomic contexts flanking small insertions and deletions [My Copy] Genome Research, Vol. 19, No. 7. (July 2009), pp. 1153-1164. by Erika M. Kvikstad, Francesca Chiaromonte, Kateryna D. Makova posted to evolution indel by djkt on 2009-07-01 22:04:27 as along with 3 people megraw Annab gjuggler
	Using evolutionary Expectation Maximization to estimate indel rates [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2294-2300. by Ian Holmes posted to indel indel_rate likelihood substitution_rate by aprasad on 2009-06-26 17:40:18 as along with 1 person druvus
	Trinucleotide repeat instability: a hairpin curve at the crossroads of replication, recombination, and repair. [My Copy] Cytogenetic and genome research, Vol. 100, No. 1-4. (2003), pp. 7-24. by B. A. Lenzmeier, C. H. Freudenreich posted to indel homopeptide low polymorphism protein recombination repair repeats replication sequence complexity disease gene human instability length by robfsouza on 2009-06-18 17:15:09 as
	Evidence that Protein Length Expansion and Contraction Is Partly Due to Mutational Events in Premeiotic Cells [My Copy] Molecular Biology and Evolution, Vol. 23, No. 7. (Jul 2006), pp. 1339-1340. by Bowen, Suzanne, Wheals, E. Alan posted to indel homopeptide evolution gene length recombination repeats sequence by robfsouza on 2009-06-18 16:54:38 as
	Protein length in eukaryotic and prokaryotic proteomes [My Copy] Nucleic Acids Research, Vol. 33, No. 10. (2005), pp. 3390-3400. by Luciano Brocchieri, Samuel Karlin posted to indel complexity length low protein repeats sequence by robfsouza on 2009-06-18 01:01:04 as
	Protein-length distributions for the three domains of life [My Copy] Trends in Genetics, Vol. 16, No. 3. (1 Mar 2000), pp. 107-109. by J. Zhang posted to indel complexity length low protein repeats sequence by robfsouza on 2009-06-18 00:58:37 as
	A Single Determinant Dominates the Rate of Yeast Protein Evolution [My Copy] Mol Biol Evol, Vol. 23, No. 2. (1 Feb 2006), pp. 327-337. by D. Allan Drummond, Alpan Raval, Claus O. Wilke posted to indel bias codon complexity correlation evolution expression gene length low protein rate repeats sequence by robfsouza on 2009-06-17 23:18:47 as along with 2 people and 1 group daveGerrard cjeans BergmanLab
	Patterns of internal gene duplication in the course of metazoan evolution [My Copy] Gene, Vol. 396, No. 1. (01 Jul 2007), pp. 59-65. by Chun-Chang Chen, Wen-Hsiung Li, Huang-Mo Sung posted to indel complexity domain duplication elongation evolution exon gene length low ontology protein repeats sequence shuffling by robfsouza on 2009-06-17 20:34:43 as
	Average Gene Length Is Highly Conserved in Prokaryotes and Eukaryotes and Diverges Only Between the Two Kingdoms [My Copy] Mol Biol Evol, Vol. 23, No. 6. (1 Jun 2006), pp. 1107-1108. by Lin Xu, Hong Chen, Xiaohua Hu, Rongmei Zhang, Ze Zhang, Z. W. Luo posted to indel eukaryote complexity gene length low prokaryotes protein sequence by robfsouza on 2009-06-17 20:28:20 as along with 1 person jjray
	Codon distribution in vertebrate genes may be used to predict gene length [My Copy] Journal of Molecular Biology, Vol. 197, No. 3. (Oct 1987), pp. 379-388. by W. Bains posted to indel bias codon complexity gene length low protein sequence by robfsouza on 2009-06-17 20:20:38 as
	Investigating the Relationship Between Genome Structure, Composition, and Ecology in Prokaryotes [My Copy] Mol Biol Evol, Vol. 19, No. 6. (1 Jun 2002), pp. 789-800. by Pietro Lio posted to indel homopeptide bias codon complexity composition dna evolution gene length low repeats sequence substitution by robfsouza on 2009-06-17 18:14:17 as along with 1 person marenzelleria
	Simple sequence repeats in proteins and their significance for network evolution [My Copy] Gene, Vol. 345, No. 1. (17 Jan 2005), pp. 113-118. by J. Hancock, M. Simon posted to indel homopeptide network codon elements evolution gene interaction length low mobile protein repeats review sequence by robfsouza on 2009-06-17 17:45:08 as
	Highly constrained proteins contain an unexpectedly large number of amino acid tandem repeats [My Copy] Genomics, Vol. 89, No. 3. (Mar 2007), pp. 316-325. by Loris Mularoni, Reiner A. Veitia, Mar M. Albà posted to indel homopeptide codon complexity elements gene length low protein repeats sequence by robfsouza on 2009-06-17 17:40:23 as
	Distribution and evolution of short tandem repeats in closely related bacterial genomes [My Copy] Gene, Vol. 410, No. 1. (29 Feb 2008), pp. 18-25. by Edit Kassai-Jáger, Csaba Ortutay, Gábor Tóth, Tibor Vellai, Zoltán Gáspári posted to indel homopeptide complexity dna evolution gene length low protein repeats sequence by robfsouza on 2009-06-17 17:31:08 as along with 1 person druvus
	Simple sequence repeats as advantageous mutators in evolution. [My Copy] Trends in genetics : TIG, Vol. 22, No. 5. (May 2006), pp. 253-259. by Yechezkel Kashi, David G. King posted to indel homopeptide complexity composition dna elements evolution gene length low protein recombination repeats review selection sequence by robfsouza on 2009-06-17 17:19:16 as along with 6 people and 2 groups operon gbloeb cambray druvus dchughes rebeccamancy G4ID Genetics-of-Gambling
	Occurrence and structure-function relationship of pentameric short sequence repeats in microbial genomes [My Copy] Research in Microbiology, Vol. 150, No. 9-10. (Nov 1999), pp. 617-626. by A. Vanbelkum posted to indel homopeptide complexity length low prokaryotes recombination repeats sequence by robfsouza on 2009-06-17 17:11:14 as along with 1 person nikkiwithers
	Selection on the genic location of disruptive elements [My Copy] Trends in Genetics, Vol. 23, No. 12. (Dec 2007), pp. 601-604. by M. Vanpassel, H. Ochman posted to indel homopeptide complexity evolution length low prokaryotes protein repeats sequence by robfsouza on 2009-06-17 16:52:05 as
	Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy? [My Copy] Molecular biology and evolution, Vol. 13, No. 6. (Jul 1996), pp. 864-872. by A. Eyre-Walker posted to indel bacteria bias codon correlation evolution length protein sequence by robfsouza on 2009-06-17 15:53:58 as along with 1 person codonusage
	The origins of modern proteomes [My Copy] Biochimie, Vol. 89, No. 12. (Dec 2007), pp. 1454-1463. by C. G. Kurland, B. Canbäck, O. G. Berg posted to indel complexity evolution gene length low protein sequence by robfsouza on 2009-06-17 05:17:30 as
	Mechanisms of tandem repeat instability in bacteria. [My Copy] Mutation research, Vol. 598, No. 1-2. (25 Jun 2006), pp. 144-163. by M. Bichara, J. Wagner, I. B. Lambert posted to indel homopeptide complexity composition dna evolution gene length low protein repeats sequence by robfsouza on 2009-06-17 05:09:29 as along with 1 person druvus
	The biological effects of simple tandem repeats: Lessons from the repeat expansion diseases [My Copy] Genome Res., Vol. 18, No. 7. (1 Jul 2008), pp. 1011-1019. by Karen Usdin posted to indel complexity composition evolution length low phenotype protein repeats sequence by robfsouza on 2009-06-17 05:05:31 as along with 6 people YukaH coela druvus Neeperando balicea dchughes
	Coding repeats and evolutionary "agility". [My Copy] BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 27, No. 6. (Jun 2005), pp. 581-587. by S. Caburet, J. Cocquet, D. Vaiman, R. A. Veitia posted to indel complexity composition evolution gene low phenotype protein repeats sequence by robfsouza on 2009-06-17 05:01:23 as along with 1 person bpcusack
	The correlated evolution of Runx2 tandem repeats, transcriptional activity, and facial length in Carnivora [My Copy] Evolution \{\&\{\\#38; Development, Vol. 9, No. 6. (Dec 2007), pp. 555-565. by Sears, E, K, Goswami, et al.A, Flynn, J, J, Niswander, A, L posted to indel complexity evolution gene length low protein repeats sequence by robfsouza on 2009-06-17 04:57:52 as along with 1 person biomcgary

Note: You may cite this page as: http://www.citeulike.org/tag/indel

Result page: 1 2 3 4 Next

evolution	97
protein	28
alignment	27
length	26
sequence	23
human	21
low	21
complexity	20
repeats	19
mutation_rate	18
phylogenetics	18
gene	16
genome	16
phylogeny	14
snp	13
duplication	12
molecular	12
software	12
bioinformatics	11
genome_size	11
mutation	11
homopeptide	10
methods	10
modeling	8
codon	7
recombination	7
review	7
genomics	6
mammals	6
polymorphism	6
sequencing	6
simulation	6
snps	6
bias	5
composition	5
drosophila	5
genome_evolution	5
indel_rate	5
noncoding	5
popgen	5
selection	5
structure	5
variation	5
algorithm	4
bacteria	4
chromosome	4
dna	4
model	4
mouse	4
repeat	4
sv	4
tools	4
transposon	4
tree	4
cancer-crosstalk	3
coding	3
comparative_genomics	3
database	3
elements	3
encode	3
est	3
genetics	3
homoplasy	3
human_genome	3
interaction	3
intron	3
mammal	3
molevol	3
msa	3
network	3
ngs	3
primates	3
prokaryotes	3
proteins	3
rate	3
read	3
substitution_rate	3
yeast	3
annotation	2
association	2
biased_mutation	2
browser	2
clone-end	2
correlation	2
detection	2
domain	2
expression	2
fly	2
motif	2
nextgen	2
paired-end	2
phenotype	2
plant	2
plants	2
rare_genomic_characters	2
reconstruction	2
regulatory	2
replication	2
website	2
whole_genome	2

Tag indel [162 articles] Export

Related Tags