Tag integration [more than 800 articles] Export

Recent papers classified by the tag integration.

	Combinatorial binding predicts spatio-temporal cis-regulatory activity [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong posted to network motif integration by fenghezi on 2009-11-06 19:58:32 as along with 7 people inesdesantiago balabu iskathy djkt megraw TRHvidsten pedrobeltrao
	Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2906-2912. by Ronglai Shen, Adam B. Olshen, Marc Ladanyi posted to variable types omic multiple model latent joint integrative integration genomic data clustering by dswan on 2009-11-06 17:30:13 as along with 1 person rdiaz
	Saint: a lightweight integration environment for model annotation [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3026-3027. by Allyson L. Lister, Matthew Pocock, Morgan Taschuk, Anil Wipat posted to sbml model lightweight integration environment annotation by dswan to the group Bioinformatics on 2009-11-06 17:27:20 as along with 2 people dullhunk allysonlister
	integrOmics: an R package to unravel relationships between two omics datasets [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2855-2856. by Kim-Anh Le Cao, Ignacio Gonzalez, Sebastien Dejean posted to relationships r omics integromics integration datasets correlation bioconductor by dswan on 2009-11-06 17:20:25 as along with 14 people mayercd operon kshameer heliopais dolchan nuin ptrobajo sebastien_vigneau rdiaz cassj brianb neils natstreet druvus
	Mechatronic integration modeling [My Copy] Advanced Intelligent Mechatronics, 1999. Proceedings. 1999 IEEE/ASME International Conference on (06 August 2002), pp. 1032-1037. by K. Craig, M. DeVito, M. Mattice, C. LaVigna, C. Teolis posted to mechatronics integration embedded by mattbiehl on 2009-11-06 14:39:49 as
	Canonical analysis of several sets of variables [My Copy] Biometrika, Vol. 58, No. 3. (1 December 1971), pp. 433-451. by J. R. Kettenring posted to integration by mayercd on 2009-11-06 14:07:38 as
	Lifting Metamodels to Ontologies: A Step to the Semantic Integration of Modeling Languages [My Copy] Model Driven Engineering Languages and Systems (2006), pp. 528-542. by Gerti Kappel, Elisabeth Kapsammer, Horst Kargl, et al.Gerhard Kramler, Thomas Reiter, Werner Retschitzegger, Wieland Schwinger, Manuel Wimmer posted to metamodeling integration by mattbiehl on 2009-11-06 14:07:06 as along with 3 people and 1 group mcheung emanders francoisl modeling
	Multiple co-inertia analysis: a tool for assessing synchrony in the temporal variability of aquatic communities. [My Copy] Comptes rendus biologies, Vol. 327, No. 1. (January 2004), pp. 29-36. by Pierre Bady, Sylvain Dolédec, Bernard Dumont, Jean-François F. Fruget posted to integration by mayercd on 2009-11-06 14:03:40 as
	An inter-battery method of factor analysis [My Copy] Psychometrika, Vol. 23, No. 2. (27 June 1958), pp. 111-136. by Ledyard Tucker posted to integration by mayercd on 2009-11-06 13:59:54 as
	Correlating gene and protein expression data using Correlated Factor Analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (01 September 2009), 272. by Chuen S. Tan, Agus Salim, Alexander Ploner, Janne Lehtio, Kee S. Chia, Yudi Pawitan posted to integration by mayercd on 2009-11-06 13:58:12 as along with 4 people rdiaz ptrobajo coffeerv phoenixzxl
	MADE4: an R package for multivariate analysis of gene expression data [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2789-2790. by Aedin C. Culhane, Jean Thioulouse, Guy Perriere, Desmond G. Higgins posted to integration by mayercd on 2009-11-06 13:43:25 as
	Metamodel-based tool integration with moflon [My Copy] In ICSE '08: Proceedings of the 30th international conference on Software engineering (2008), pp. 807-810. by Carsten Amelunxen, Felix Klar, Alexander Königs, Tobias Rötschke, Andy Schürr posted to integration by mattbiehl on 2009-11-06 13:22:21 as along with 2 people florianschneider alexander220
	Quantifying the association between gene expressions and DNA-markers by penalized canonical correlation analysis. [My Copy] Statistical applications in genetics and molecular biology, Vol. 7, No. 1. (2008) by Sandra Waaijenborg, Philip C. Verselewel de Witt Hamer, Aeilko H. Zwinderman posted to integration by mayercd on 2009-11-06 12:05:50 as
	Sparse canonical correlation analysis for identifying, connecting and completing gene-expression networks [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 315. by Sandra Waaijenborg, Aeilko Zwinderman posted to integration by mayercd on 2009-11-06 11:58:33 as along with 3 people dipenps rdiaz neils
	A new research agenda for tool integration [My Copy] Journal of Systems and Software, Vol. 80, No. 9. (September 2007), pp. 1569-1585. by M. Wicks, R. Dewar posted to integration by mattbiehl on 2009-11-06 10:05:13 as
	Simultaneous analysis of distinct Omics data sets with integration of biological knowledge: Multiple Factor Analysis approach [My Copy] BMC Genomics, Vol. 10, No. 1. (20 January 2009), 32. by Marie de Tayrac, Sebastien Le, Marc Aubry, Jean Mosser, Francois Husson posted to integration by mayercd on 2009-11-05 17:47:17 as along with 4 people sotacam guhjy rdiaz lptolik
	Data merging for integrated microarray and proteomic analysis [My Copy] Brief Funct Genomic Proteomic, Vol. 5, No. 4. (1 December 2006), pp. 261-272. by Katrina M. Waters, Joel G. Pounds, Brian D. Thrall posted to integration by mayercd on 2009-11-05 17:44:19 as along with 2 people guhjy jfr
	Sparse canonical methods for biological data integration: application to a cross-platform study. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Kim-Anh A. Lê Cao, Pascal G. Martin, Christèle Robert-Granié, Philippe Besse posted to integration by mayercd on 2009-11-05 17:30:33 as along with 7 people jlorent ptrobajo jfr rdiaz guhjy jmeppley druvus
	Co-inertia analysis: an alternative method for studying species–environment relationships [My Copy] Freshwater Biology, Vol. 31, No. 3. (1994), pp. 277-294. by C. Sylvain Doléde, L. Daniel Chesse posted to integration by mayercd on 2009-11-05 17:29:47 as along with 1 person jlorent
	A multivariate analysis approach to the integration of proteomic and gene expression data. [My Copy] Proteomics, Vol. 7, No. 13. (June 2007), pp. 2162-2171. by Ailís Fagan, Aedín C. Culhane, Desmond G. Higgins posted to integration by mayercd on 2009-11-05 17:27:56 as along with 4 people jlorent guhjy jfr ppark
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted to protein_interaction network module_detection integration gene_expression by jfr on 2009-11-03 17:23:37 as along with 4 people yaredo saket tmmurali phoenixzxl
	Integrated functional, gene expression and genomic analysis for the identification of cancer targets. [My Copy] PloS one, Vol. 4, No. 4. (9 April 2009), e5120. by Elizabeth Iorns, Christopher J. Lord, Anita Grigoriadis, et al.Sarah McDonald, Kerry Fenwick, Alan Mackay, Charles A. Mein, Rachael Natrajan, Kay Savage, Narinder Tamber, Jorge S. Reis-Filho, Nicholas C. Turner, Alan Ashworth posted to target rnai integration gene_expression drug_discovery copy-number biomarker by jfr on 2009-11-03 17:11:01 as along with 2 people rdiaz roys
	Strategic Sourcing, Vertical Integration, and Transaction Costs [My Copy] INTERFACES, Vol. 18, No. 3. (1 May 1988), pp. 62-73. by Gordon Walker posted to vertical transaction strategic sourcing integration costs by derchao on 2009-11-03 03:01:47 as
	Identification of copy number gain and overexpressed genes on chromosome arm 20q by an integrative genomic approach in cervical cancer: potential role in progression. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 9. (September 2008), pp. 755-765. by Luigi Scotto, Gopeshwar Narayan, Subhadra V. Nandula, et al.Hugo Arias-Pulido, Shivakumar Subramaniyam, Achim Schneider, Andreas M. Kaufmann, Jason D. Wright, Bhavana Pothuri, Mahesh Mansukhani, Vundavalli V. Murty posted to integration gene_expression copy-number cervical_cancer 20q by jfr on 2009-11-02 16:58:49 as along with 1 person YuvalTabach
	Copy number alterations that predict metastatic capability of human breast cancer. [My Copy] Cancer research, Vol. 69, No. 9. (1 May 2009), pp. 3795-3801. by Yi Zhang, John W. Martens, Jack X. Yu, et al.John Jiang, Anieta M. Sieuwerts, Marcel Smid, Jan G. Klijn, Yixin Wang, John A. Foekens posted to integration copy-number classification breast_cancer by jfr on 2009-11-02 16:57:47 as along with 4 people giovenko frohike kdpreter rdiaz
	Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4834-4839. by H. B. Salvesen, S. L. Carter, M. Mannelqvist, et al.A. Dutt, G. Getz, I. M. Stefansson, M. B. Raeder, M. L. Sos, I. B. Engelsen, J. Trovik, E. Wik, H. Greulich, T. H. Bø, I. Jonassen, R. K. Thomas, T. Zander, L. A. Garraway, A. M. Oyan, W. R. Sellers, K. H. Kalland, M. Meyerson, L. A. Akslen, R. Beroukhim posted to pik3ca integration gene_expression copy-number by jfr on 2009-11-02 16:39:09 as
	Correlation of microRNA levels during hypoxia with predicted target mRNAs through genome-wide microarray analysis. [My Copy] BMC medical genomics, Vol. 2, No. 1. (2009), 15. by Jennifer S. Guimbellot, Stephen W. Erickson, Tapan Mehta, et al.Hui Wen, Grier P. Page, Eric J. Sorscher, Jeong S. Hong posted to mirna_target mirna integration hypoxia gene_expression by jfr on 2009-11-02 16:29:49 as along with 1 person pengchy
	A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions. [My Copy] RNA (New York, N.Y.), Vol. 14, No. 11. (23 November 2008), pp. 2290-2296. by Chad J. Creighton, Ankur K. Nagaraja, Samir M. Hanash, Martin M. Matzuk, Preethi H. Gunaratne posted to software mirna_target mirna integration gene_expression by jfr on 2009-11-02 15:40:31 as along with 8 people and 1 group valeriehilgers ealloza guhjy giovenko Stew druvus pengchy bootsy microRNA database
	Integrating functional genomics data using maximum likelihood based simultaneous component analysis. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (16 October 2009), 340. by Robert A. van den Berg, Iven Van Mechelen, Tom F. Wilderjans, Katrijn Van Deun, Henk A. Kiers, Age K. Smilde posted to integration cross-species by ptrobajo on 2009-11-02 10:36:58 as along with 2 people and 1 group sillitoe ashishanand Orengo Group Journal Picks
	Detailing regulatory networks through large scale data integration [My Copy] Bioinformatics (13 October 2009), btp588. by Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, et al.Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller posted to regulatory network integration compendium br45 bicluster bayesian by ptrobajo on 2009-11-02 10:19:57 as along with 3 people zufar rdiaz frohike
	Capturing Value from Technological Innovation: Integration, Strategic Partnering, and Licensing Decisions [My Copy] INTERFACES, Vol. 18, No. 3. (1 May 1988), pp. 46-61. by David J. Teece posted to value technological strategic partnering licensing integration innovation decisions capturing by derchao on 2009-11-02 04:10:33 as
	Competition and 'Local' Communications: Innovation, Entry and Integration [My Copy] Ind Corp Change, Vol. 4, No. 4. (1 January 1995), pp. 787-814. by Gregory L. Rosston, David J. Teece posted to local integration innovation entry competition communications by derchao on 2009-10-30 16:37:15 as
	System-on-a-chip integration in the semiconductor industry: industry structure and firm strategies [My Copy] Ind Corp Change, Vol. 12, No. 3. (1 June 2003), pp. 545-576. by Greg Linden, Deepak Somaya posted to system-on-a-chip structure strategies semiconductor integration industry firm by derchao on 2009-10-30 15:20:37 as
	Vertical Integration and Technological Innovation [My Copy] The Review of Economics and Statistics, Vol. 62, No. 3. (1980), pp. 470-474. by Henry O. Armour, David J. Teece posted to vertical technological integration innovation by derchao on 2009-10-30 10:26:21 as along with 1 person vanity1961
	Appropriable Rents and Quasi-Vertical Integration [My Copy] Journal of Law and Economics, Vol. 25, No. 2. (1982), pp. 321-328. by Kirk Monteverde, David J. Teece posted to rents quasi-vertical integration appropriable by derchao on 2009-10-30 10:07:40 as
	Profiting from technological innovation: Implications for integration, collaboration, licensing and public policy [My Copy] Research Policy, Vol. 15, No. 6. (December 1986), pp. 285-305. by David J. Teece posted to technological public profiting policy licensing integration innovation implications collaboration by derchao on 2009-10-29 18:03:51 as along with 4 people abcunha chiasson cmmorel joelwest
	Integrating chromosomal aberrations and gene expression profiles to dissect rectal tumorigenesis [My Copy] BMC Cancer, Vol. 8, No. 1. (2008), 314. by Esther Lips, Ronald van Eijk, Eelco de Graaf, et al.Jan Oosting, Noel de Miranda, Tom Karsten, Cornelis van de Velde, Paul Eilers, Rob Tollenaar, Tom van Wezel, Hans Morreau posted to tumorigenesis rectal integration expression cgh cancer by dolchan on 2009-10-29 17:10:15 as along with 7 people zufar rdiaz tvanwezel jfr imina ealloza frohike
	Accounting for uncertainty in health economic decision models by using model averaging [My Copy] Journal of the Royal Statistical Society: Series A (Statistics in Society), Vol. 172, No. 2. (April 2009), pp. 383-404. by Christopher H. Jackson, Simon G. Thompson, Linda D. Sharples posted to model-combination integration by jxl on 2009-10-28 11:51:05 as
	Moderated effect size and P-value combinations for microarray meta-analyses [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2692-2699. by Guillemette Marot, Jean-Louis Foulley, Claus-Dieter Mayer, Florence Jaffrezic posted to r meta-analysis integration gene_expression by shikin on 2009-10-26 18:01:13 as along with 6 people zufar dswan renatomilani rdiaz nuin daforerog
	Meta-analysis of genome searches. [My Copy] Annals of human genetics, Vol. 63, No. Pt 3. (May 1999), pp. 263-272. by L. H. Wise, J. S. Lanchbury, C. M. Lewis posted to meta-analysis integration gwas by shikin on 2009-10-26 17:41:52 as along with 1 person and 3 groups beapen Atopic_and_Seborrhoeic_Dermatitis Skin_Deep Applied_Bimatics
	Pathway redundancy and protein essentiality revealed in the Saccharomyces cerevisiae interaction networks [My Copy] Molecular Systems Biology, Vol. 3 (17 April 2007) by Igor Ulitsky, Ron Shamir posted to topology ppi networks integration genetic-interactions by colmryan on 2009-10-23 12:42:04 as along with 6 people dakelley chasmand benjaminsb nicoleq zwang carlk
	The Practice and Process of Delivering Integration through Strategic Planning [My Copy] Journal of Management Studies, Vol. 46, No. 8. (2009), pp. 1255-1288. by Paula Jarzabkowski, Julia Balogun posted to strategic process practice planning integration delivering by derchao on 2009-10-22 16:12:42 as
	Greater Than the Sum of Its Parts: Combining Models for Useful ADMET Prediction [My Copy] Journal of Medicinal Chemistry, Vol. 48, No. 4. (1 February 2005), pp. 1287-1291. by Sean E. O'Brien, Marcel J. de Groot posted to integration by jxl on 2009-10-22 15:33:44 as
	Systematic interpretation of genetic interactions using protein networks [My Copy] Nat Biotech, Vol. 23, No. 5. (05 May 2005), pp. 561-566. by Ryan Kelley, Trey Ideker posted to sga ppi networks integration genetic-interactions by colmryan on 2009-10-22 12:32:16 as along with 21 people and 2 groups nzm dakelley chasmand ajbattle mtaschuk benjaminsb lptolik nedwards okarsligil tuck balajis wnpx nirfriedman nickluscombe mmt koller massivemayhem patrycjam patrycja_missiuro mingzhi carlk Bioinformatics EBI-regulation
	A multiple in silico program approach for the prediction of mutagenicity from chemical structure. [My Copy] Mutation research, Vol. 539, No. 1-2. (5 August 2003), pp. 77-89. by Anita C. White, Richard A. Mueller, Robert H. Gallavan, Sid Aaron, Alan G. Wilson posted to mutcar integration by jxl on 2009-10-21 16:32:56 as
	An integrated genomic analysis of lung cancer reveals loss of DUSP4 in EGFR-mutant tumors [My Copy] Oncogene, Vol. 28, No. 31. (15 June 2009), pp. 2773-2783. by D. Chitale, Y. Gong, B. S. Taylor, et al.S. Broderick, C. Brennan, R. Somwar, B. Golas, L. Wang, N. Motoi, J. Szoke, J. M. Reinersman, J. Major, C. Sander, V. E. Seshan, M. F. Zakowski, V. Rusch, W. Pao, W. Gerald, M. Ladanyi posted to microarray_data lung_cancer integration egfr dusp copy_number_variation by frohike on 2009-10-16 17:58:44 as
	HPD: an online integrated human pathway database enabling systems biology studies. [My Copy] BMC bioinformatics, Vol. 10 Suppl 11, No. Suppl 11. (2009), S5. by Sudhir R. Chowbina, Xiaogang Wu, Fan Zhang, et al.Peter M. Li, Ragini Pandey, Harini N. Kasamsetty, Jake Y. Chen posted to reactome pathway miranda kegg integration database by ptrobajo on 2009-10-16 13:43:26 as along with 1 person daforerog
	STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 332. by Daniel Jupiter, Hailin Chen, Vincent VanBuren posted to visualization software network integration coexpression by rdiaz on 2009-10-15 18:34:42 as along with 5 people and 1 group sillitoe rcr1991 trogdor druvus torfinnnome Orengo Group Journal Picks
	Oncogene Mutations, Copy Number Gains and Mutant Allele Specific Imbalance (MASI) Frequently Occur Together in Tumor Cells [My Copy] PLoS ONE, Vol. 4, No. 10. (14 October 2009), e7464. by Junichi Soh, Naoki Okumura, William W. Lockwood, et al.Hiromasa Yamamoto, Hisayuki Shigematsu, Wei Zhang, Raj Chari, David S. Shames, Ximing Tang, Calum MacAulay, Marileila Varella-Garcia, Tõnu Vooder, Ignacio I. Wistuba, Stephen Lam, Rolf Brekken, Shinichi Toyooka, John D. Minna, Wan L. Lam, Adi F. Gazdar posted to tumor metastasis integration cnv by rdiaz on 2009-10-15 18:29:34 as
	Integrated Analysis of Copy Number Alterations and Gene Expression: A Bivariate Assessment of Equally Directed Abnormalities [My Copy] Bioinformatics (14 October 2009), btp592. by Martin Schafer, Holger Schwender, Sylvia Merk, Claudia Haferlach, Katja Ickstadt, Martin Dugas posted to integration expression cnv cgh by rdiaz on 2009-10-15 16:56:24 as

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data	101
network	76
expression	68
ontology	64
vision	61
bioinformatics	59
review	53
regulation	52
gene_expression	50
networks	40
genomics	38
analysis	37
database	37
transcription	37
systems	36
microarray	35
cnv	33
for-the-review	31
perception	31
protein	30
software	30
copy-number	29
cancer	28
semantic	28
web	28
biodegradation	27
information	25
yeast	24
methodspaper	23
model	23
disease	22
meta-analysis	22
breast_cancer	21
classification	21
human	21
proteomics	21
prediction	20
language	19
learning	19
simulation	19
gpsins	18
knowledge	18
multimodal	18
attention	17
crossmodal	17
databases	17
db	17
power	17
gene	16
haptics	16
interaction	16
management	16
sensory	16
synchrony	16
tool	16
biology	15
technology	15
visual	15
wind	15
annotation	14
clustering	14
gene-expression	14
soa	14
development	13
intermodal_perception	13
mesh	13
research	13
schema	13
time	13
algorithm	12
cue_integration	12
dendrite	12
methodology	12
models	12
multisensory	12
ontologies	12
xml	12
auditory	11
cgh	11
dataspace	11
deletion	11
example	11
innovation	11
interface	11
market	11
multisensory_integration	11
psychophysics	11
rhythms	11
temporal	11
therapy	11
vertical	11
acgh	10
comprehension	10
framework	10
genome	10
mitochondria	10
neurobiology	10
speech	10
systems-biology	10
treatment	10

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