Tag interactions [more than 800 articles] Export

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	The Proteomic Code: a molecular recognition code for proteins [My Copy] Theoretical Biology and Medical Modelling, Vol. 4, No. 1. (13 November 2007), 45. by Jan Biro posted to proteomic protein physico_chemical molecular interactions by bertelsen on 2009-11-23 21:38:36 as along with 1 person smit2jam
	Optimizing Fragment and Scaffold Docking by Use of Molecular Interaction Fingerprints [My Copy] Journal of Chemical Information and Modeling, Vol. 47, No. 1. (1 January 2007), pp. 195-207. by Gilles Marcou, Didier Rognan posted to interactions by RebeccaHamer on 2009-11-16 16:43:44 as along with 8 people klexa richardbickerton nanonan BragilMassoud peprovy schlauchi massivemayhem sithmein
	Predicting new molecular targets for known drugs [My Copy] Nature, Vol. 462, No. 7270. (01 November 2009), pp. 175-181. by Michael J. Keiser, Vincent Setola, John J. Irwin, et al.Christian Laggner, Atheir I. Abbas, Sandra J. Hufeisen, Niels H. Jensen, Michael B. Kuijer, Roberto C. Matos, Thuy B. Tran, Ryan Whaley, Richard A. Glennon, Jerome Hert, Kelan L. H. Thomas, Douglas D. Edwards, Brian K. Shoichet, Bryan L. Roth posted to interactions by TRHvidsten on 2009-11-12 07:47:16 as along with 14 people and 1 group venancio okapi ahmetbakan zufar pablocarb zwang phoenixzxl qshao Yanno mnishimu tmmurali sjcockell seb1 abhishek_tiwari Journal picks
	Contributions of Bacterial Surface Polymers, Electrostatics, and Cell Elasticity to the Shape of AFM Force Curves [My Copy] Langmuir, Vol. 18, No. 13. (1 June 2002), pp. 5256-5262. by Stephanie B. Velegol, Bruce E. Logan posted to surface polymer interactions force_measurements escherichia_coli elasticity elastic_behavior bacterial_surface bacteria afm by AdamShaw on 2009-11-10 11:44:22 as along with 1 person bobturner
	The application of atomic force microscopy force measurements to the characterisation of microbial surfaces [My Copy] Surface and Interface Analysis, Vol. 38, No. 11. (2006), pp. 1419-1428. by Chris J. Wright, Ian Armstrong posted to surface nanomechanics molecular microscopy microbiology measurements interactions force cell atomic aggregation afm adhesion by AdamShaw on 2009-11-06 14:25:23 as along with 2 people shrikondra bobturner
	Computer-aided design of functional protein interactions [My Copy] Nature Chemical Biology, Vol. 5, No. 11. (19 October 2009), pp. 797-807. by Daniel J. Mandell, Tanja Kortemme posted to protein_engineering protein_design protein interface interactions in-silico function by pablocarb on 2009-11-04 14:55:17 as along with 3 people and 2 groups robertrentzsch cchang flbarroso Orengo Group Journal Picks Chang group
	Interactions between electrons, mesoscopic Josephson effect and asymmetric current fluctuations [My Copy] Annales de Physique, Vol. 31, No. 4-5., pp. 1-245. by B. Huard posted to josephson_effect interactions fluctuations electrons by vagantes on 2009-10-31 17:08:55 as
	Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling [My Copy] Vol. 139, No. 3. (30 October 2009), pp. 610-622. by Shaohui Hu, Zhi Xie, Akishi Onishi, et al.Xueping Yu, Lizhi Jiang, Jimmy Lin, Hee-sool Rho, Crystal Woodard, Hong Wang, Jun-Seop Jeong, Shunyou Long, Xiaofei He, Herschel Wade, Seth Blackshaw, Jiang Qian, Heng Zhu posted to transcriptional_repressor transcription_factors interactions genomics gene_regulation cis-regulatory_element by daveGerrard to the group BergmanLab on 2009-10-30 11:28:30 as along with 2 people snow_dragon pedrobeltrao
	The role of DNA shape in protein\|[ndash]\|DNA recognition [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1248-1253. by Remo Rohs, Sean M. West, Alona Sosinsky, Peng Liu, Richard S. Mann, Barry Honig posted to interactions by TRHvidsten on 2009-10-29 18:10:52 as along with 9 people gjuggler hagechouchin443 renatomilani emptyhb sandersl Fernando_FF operon kintoki djkt
	Fine-Grained Analysis of Web Tasks through Data Visualization [My Copy] Web Engineering (2009), pp. 1-15. by Gennaro Costagliola, Vittorio Fuccella posted to visualisation user usability tracking tool of interactions information evaluation behaviour by zanzibarsperlary on 2009-10-29 11:45:36 as
	Computational design of affinity and specificity at protein–protein interfaces [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 4. (29 August 2009), pp. 458-463. by John Karanicolas, Brian Kuhlman posted to rosetta review molecular-dynamics interactions design by bmduggan on 2009-10-28 15:28:08 as along with 4 people sobolevnrm VGreiff higueruelo barry
	Theory of Protein Titration Curves. I. General Equations for Impenetrable Spheres [My Copy] Journal of the American Chemical Society, Vol. 79, No. 20. (1 October 1957), pp. 5333-5339. by Charles Tanford, John G. Kirkwood posted to nanosphere microsphere interactions high-k electrostaic dielectric bacteria by zenofchem on 2009-10-27 20:20:09 as along with 3 people flbarroso mikaellund dfgreen
	Involvement in a Conversation and Attributions Concerning Excessive Self-Disclosure [My Copy] Southern Communication Journal, Vol. 72, No. 4. (2007), pp. 345-354. by Jessica J. Weisel, Paul E. King posted to theory social interactions initial experimental exchange attribution by pdillon on 2009-10-25 19:54:11 as
	BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 345. by Junbai Wang, Morigen posted to interactions by TRHvidsten on 2009-10-23 07:31:46 as along with 1 person ashishanand
	Molecular networks as sensors and drivers of common human diseases [My Copy] Nature, Vol. 461, No. 7261. (09 September 2009), pp. 218-223. by Eric E. Schadt posted to networks interactions by robfree on 2009-10-21 15:07:07 as along with 14 people apocapoc ptrobajo MurphysLab biomcgary greg inesdesantiago pablocarb brianb abhishek_tiwari zufar pkonings rdiaz daforerog megraw
	Mechanism of DNA substrate recognition by the mammalian DNA repair enzyme, Polynucleotide Kinase [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), pp. 6161-6173. by N. K. Bernstein, M. Hammel, R. S. Mani, et al.M. Weinfeld, M. Pelikan, J. A. Tainer, J. N. M. Glover posted to saxs reconstruction interactions dna-protein by spabit on 2009-10-20 17:09:28 as
	The role of dynamic conformational ensembles in biomolecular recognition [My Copy] Nature Chemical Biology, Vol. 5, No. 11. (10 October 2009), pp. 789-796. by David D. Boehr, Ruth Nussinov, Peter E. Wright posted to interactions induced_fit ensembles conformational by ubcg08l on 2009-10-20 09:45:00 as along with 3 people skywalkerus02 higueruelo paulschlesinger
	A cell surface interaction network of neural leucine-rich repeat receptors. [My Copy] Genome biology, Vol. 10, No. 9. (18 September 2009), R99. by Christian Söllner, Gavin J. Wright posted to interactions extracellular by grahamc on 2009-10-19 03:49:58 as along with 1 person carlk
	How and when should interactome-derived clusters be used to predict functional modules and protein function? [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3143-3150. by Jimin Song, Mona Singh posted to protein interactions by jsuchit on 2009-10-09 00:13:39 as along with 4 people TRHvidsten grahamc carlk saket
	Four Distances between Pairs of Amino Acids Provide a Precise Description of their Interaction [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (14 August 2009), e1000470. by Mati Cohen, Vladimir Potapov, Gideon Schreiber posted to sep09 plos pairs interactions distances amino_acids by klexa on 2009-10-07 14:08:56 as along with 6 people nickolay Diego_Prada zwang reyez TRHvidsten ericrpaquet
	Pushing Structural Information into the Yeast Interactome by High-Throughput Protein Docking Experiments [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000490. by Roberto Mosca, Carles Pons, Juan Fernández-Recio, Patrick Aloy posted to structure sep09 protein plos interactions docking by klexa on 2009-10-07 13:47:09 as along with 4 people and 1 group bdessailly zwang phoenixzxl TRHvidsten Orengo Group Journal Picks
	Geometry of nonbonded interactions involving planar groups in proteins [My Copy] Progress in Biophysics and Molecular Biology, Vol. 95, No. 1-3. (September 2007), pp. 83-137. by Pinak Chakrabarti, Rajasri Bhattacharyya posted to interactions by ubcg08l on 2009-10-06 16:42:33 as along with 1 person massivemayhem
	Evidence of Charge Transfer at the Cu-phthalocyanine/Al(100) Interface† [My Copy] The Journal of Physical Chemistry C, Vol. 112, No. 6. (1 February 2008), pp. 2016-2025. by A. Ruocco, F. Evangelista, R. Gotter, A. Attili, G. Stefani posted to interface interactions cupc charge_transfer by garjey on 2009-10-06 14:20:22 as
	The Modular Organization of Protein Interactions in Escherichia coli [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (2 October 2009), e1000523. by José M. Peregrín-Alvarez, Xuejian Xiong, Chong Su, John Parkinson posted to protein organisation modular interactions coli by dswan to the group Bioinformatics on 2009-10-02 16:49:40 as along with 6 people and 1 group venancio CorinYeats biomcgary grahamc kiekyon poirel Orengo Group Journal Picks
	Fibrillin-integrin interactions in health and disease. [My Copy] Biochemical Society transactions, Vol. 36, No. Pt 2. (April 2008), pp. 257-262. by Jelena Jovanović, Sarah Iqbal, Sacha Jensen, Helen Mardon, Penny Handford posted to interactions integrin fibrillin ecm disease by grahamc on 2009-09-29 22:12:23 as
	BIND: the Biomolecular Interaction Network Database. [My Copy] Nucleic acids research, Vol. 31, No. 1. (1 January 2003), pp. 248-250. by Gary D. Bader, Doron Betel, Christopher W. Hogue posted to network interactions database biomolecular by bertelsen on 2009-09-25 12:22:45 as along with 9 people and 2 groups web03 viktor21614 okarsligil lfriedl chad_davis dullhunk gurkanbebek dragonrez bicko kdl Bioinformatics
	Probing Interactions in Fixed and Multilevel Regression: Inferential and Graphical Techniques [My Copy] Multivariate Behavioral Research, Vol. 40, No. 3. (2005), pp. 373-400. by Daniel J. Bauer, Patrick J. Curran posted to path interactions by austin987 on 2009-09-24 19:12:32 as
	Computational Tools for Probing Interactions in Multiple Linear Regression, Multilevel Modeling, and Latent Curve Analysis [My Copy] Journal of Educational and Behavioral Statistics, Vol. 31, No. 4. (1 January 2006), pp. 437-448. by Kristopher J. Preacher, Patrick J. Curran, Daniel J. Bauer posted to interactions by austin987 on 2009-09-24 19:00:50 as along with 1 person rgarfinkel
	A systems biology approach for pathway level analysis [My Copy] Genome Research, Vol. 17, No. 10. (4 October 2007), pp. 1537-1545. by Sorin Draghici, Purvesh Khatri, Adi L. Tarca, et al.Kashyap Amin, Arina Done, Calin Voichita, Constantin Georgescu, Roberto Romero posted to systems-biology statistical pathway ontologies magnitude interactions gene-expression functional-genomics analysis by bertelsen on 2009-09-21 16:27:22 as along with 22 people and 2 groups zufar tonamswish gbloeb cgaugain ptrobajo pengchy tmmurali dragonrez jfr gurkanbebek grahamc shigepong zwang cabbagezs cerami xingxu shikin idonaldson Pao-Yang thomaskelder heliopais AlexanderPico Bioinformatics OPIG
	Trapping and Manipulation of Isolated Atoms Using Nanoscale Plasmonic Structures [My Copy] Physical Review Letters, Vol. 103, No. 12. (2009), 123004. by D. E. Chang, J. D. Thompson, H. Park, et al.V. Vuletić, A. S. Zibrov, P. Zoller, M. D. Lukin posted to plasmons nanostructure interactions atom by convulted on 2009-09-18 21:00:40 as
	Characterization and prediction of protein-protein interactions within and between complexes. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 40. (3 October 2006), pp. 14718-14723. by Einat Sprinzak, Yael Altuvia, Hanah Margalit posted to networks interactions interaction by carlk on 2009-09-16 18:31:52 as along with 2 people flbarroso yeastyboy
	What do diffusion measurements tell us about membrane compartmentalisation? Emergence of the role of interprotein interactions. [My Copy] Journal of chemical biology, Vol. 1, No. 1-4. (1 November 2008), pp. 37-48. by Nicolas Destainville, Fabrice Dumas, Laurence Salomé posted to membrane interprotein interactions diffusion compartmentalisation comparmtment analysis by ARobson on 2009-09-16 17:15:58 as along with 1 person choonpeng
	Gene networks in Drosophila melanogaster: integrating experimental data to predict gene function [My Copy] Genome Biology, Vol. 10, No. 9. (2009), R97. by James Costello, Mehmet Dalkilic, Scott Beason, et al.Jeff Gehlhausen, Rupali Patwardhan, Sumit Middha, Brian Eads, Justen Andrews posted to network interactions genomics drosophila by daveGerrard to the group BergmanLab on 2009-09-16 14:13:43 as along with 8 people and 1 group meanerelk abc623 Borelli carlk bdessailly sotacam kiekyon druvus Orengo Group Journal Picks
	Building Disease-Specific Drug-Protein Connectivity Maps from Molecular Interaction Networks and PubMed Abstracts [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (31 July 2009), e1000450. by Jiao Li, Xiaoyan Zhu, Jake Y. Chen posted to molecular-connectivity-map therapeutic systems-biology networks molecular mining interactions integration gene-expression functional-genomics drug-discovery drug disease computational-biology biomolecular abstracts by bertelsen on 2009-09-15 19:51:37 as along with 8 people and 2 groups ptrobajo apocapoc andrewclegg NickFurnham guhjy kshameer mingzhi frohike Journal picks Orengo Group Journal Picks
	Interaction between Intrinsically Disordered Proteins Frequently Occurs in a Human Protein–Protein Interaction Network [My Copy] Journal of Molecular Biology, Vol. 392, No. 5. (09 October 2009), pp. 1253-1265. by Kana Shimizu, Hiroyuki Toh posted to protein ppi interactions by ekotelnikova on 2009-09-14 19:31:19 as along with 8 people and 1 group jjray bdessailly nzm kiekyon tprpip higueruelo cabbagesofdoom reyez Orengo Group Journal Picks
	A Coalgebraic Description of Web Interactions [My Copy] Theoretical Computer Science (2003), pp. 271-283. by Daniela Cancila, Furio Honsell posted to transactions semigroups semigroupoids semantic-web interactions interacting coalgebroids coalgebras coalgebraicity coalgebraic behaviours automatons algebroids algebraicity algebraic-semiotics by isotelesis on 2009-09-12 03:16:37 as along with 1 person Scis0000002
	A Probabilistic Functional Network of Yeast Genes [My Copy] Science, Vol. 306, No. 5701. (26 November 2004), pp. 1555-1558. by Insuk Lee, Shailesh V. Date, Alex T. Adai, Edward M. Marcotte posted to yeast roberto protein-protein probmod predictions predict_function ppi pathway_prediction nw_modularity networks network methods memo interactome interactions integrative gene-gene gene-expression functional-genome function computational clustering class biology bioinformatics bio-stat bio applied-math animal-model by isotelesis on 2009-09-12 00:46:26 as along with 20 people and 3 groups snow_dragon freesci eesruiz aelef jiny irenas lfriedl ccots balajis nuke2005 eweaver opheliav nickluscombe reidy dbgrant kintoki balicea svdate ellakat roys dbk-lab kdl EBI-regulation
	Mediation, Modulation, and Consequences of Membrane-Cytoskeleton Interactions [My Copy] Annual Review of Biophysics, Vol. 37, No. 1. (2008), pp. 65-95. by Gary J. Doherty, Harvey T. McMahon posted to review modulation membrane mediation mechanistic invivo interactions human disease cytoskeleton cell-migration biophysics biology by bertelsen on 2009-09-11 13:21:10 as along with 1 person guhjy
	Genome-scale gene/reaction essentiality and synthetic lethality analysis [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Patrick F. Suthers, Alireza Zomorrodi, Costas D. Maranas posted to synthetic networks lethality interactions genetic essentiality by robertrentzsch to the group Orengo Group Journal Picks on 2009-09-11 11:09:30 as along with 2 people pinney biomcgary
	Bornyl (3,4,5-trihydroxy)-cinnamate--an optimized human neutrophil elastase inhibitor designed by free energy calculations. [My Copy] Bioorganic & medicinal chemistry, Vol. 16, No. 5. (1 March 2008), pp. 2385-2390. by Thomas Steinbrecher, Andrea Hrenn, Korinna L. Dormann, Irmgard Merfort, Andreas Labahn posted to thermodynamic-integration molecular-dynamics interactions docking by bmduggan on 2009-09-08 20:24:03 as along with 1 person dmobley
	Systemic computation: A model of interacting systems with natural characteristics [My Copy] International Journal of Parallel, Emergent and Distributed Systems, Vol. 22, No. 2. (2007), pp. 103-121. by Peter J. Bentley posted to theory systems systemic-computation simulations neural-networks natural modelling interactions framework evolutionary-computation computational-biology computation algorithms by bertelsen on 2009-09-06 10:18:21 as
	Anatomy of a structural pathway for activation of the catalytic domain of Src kinase Hck [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67, No. 4. (1 June 2007), pp. 1096-1112. by Nilesh K. Banavali, Benoît Roux posted to targeted sampling molecular-dynamics interactions allostery by bmduggan on 2009-09-04 15:33:12 as along with 3 people allmensch choonpeng ruvido
	Convergence and combination of methods in protein–protein docking [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 2. (25 April 2009), pp. 164-170. by Sandor Vajda, Dima Kozakov posted to interactions haddock docking by bmduggan on 2009-09-03 19:14:51 as along with 4 people reyez barry zwang paulschlesinger
	Thermodynamic basis of the principle of least action [My Copy] Russian Physics Journal, Vol. 34, No. 5. (1 May 1991), pp. 426-431. by V. N. Maslov posted to thermodynamics liquid interactions interaction hydrodynamics fluid_dynamics driven by ghunter on 2009-09-02 00:07:10 as
	Chemical versus van der Waals Interaction: The Role of the Heteroatom in the Flat Absorption of Aromatic Molecules [bold C][sub 6][bold H][sub 6], [bold C][sub 5]NH[sub 5], and [bold C][sub 4][bold N][sub 2][bold H][sub 4] on the Cu(110) Surface [My Copy] Physical Review Letters, Vol. 102, No. 13. (2009), 136809. by N. Atodiresei, V. Caciuc, P. Lazić, S. Blügel posted to van-der-waals phthalocyanines interactions by garjey on 2009-08-31 13:32:45 as
	Mechanisms of drug combinations: interaction and network perspectives [My Copy] Nat Rev Drug Discov, Vol. 8, No. 2. (01 February 2009), pp. 111-128. by Jia Jia, Feng Zhu, Xiaohua Ma, Zhiwei W. Cao, Yixue X. Li, Yu Z. Chen posted to network interactions drug combinatorial analysis by bertelsen on 2009-08-26 22:42:32 as along with 9 people jbesnard ipark-kaist abhishek_tiwari richardbickerton mingzhi wenhui nicklynch reyez Tingting
	Economic Analysis of Social Interactions [My Copy] The Journal of Economic Perspectives, Vol. 14, No. 3. (2000), pp. 115-136. by Charles F. Manski posted to social interactions economics by tnhh on 2009-08-23 23:59:46 as along with 4 people and 1 group ivineet connyc livingthingdan georgehwang livingthing
	Design of multi-specificity in protein interfaces. [My Copy] PLoS computational biology, Vol. 3, No. 8. (1 August 2007), e164. by Elisabeth L. Humphris, Tanja Kortemme posted to protein-engineering interactions by bmduggan on 2009-08-20 18:28:31 as along with 9 people and 3 groups allmensch msuarezdiez jwm bicko Einat dpollard Scis0000002 phoenixzxl marck structural_bioinformatics Bioinformatics EisenLab
	Computational design of protein-protein interactions. [My Copy] Current opinion in chemical biology, Vol. 8, No. 1. (February 2004), pp. 91-97. by Tanja Kortemme, David Baker posted to protein-engineering interactions by bmduggan on 2009-08-20 18:26:47 as along with 7 people qluo lna jwm bicko hmk cjeans jteyra
	Computational redesign of protein-protein interaction specificity [My Copy] Nat Struct Mol Biol, Vol. 11, No. 4. (April 2004), pp. 371-379. by Tanja Kortemme, Lukasz A. Joachimiak, Alex N. Bullock, Aaron D. Schuler, Barry L. Stoddard, David Baker posted to protein-engineering interactions by bmduggan on 2009-08-20 18:25:54 as along with 7 people lna jwm bicko ruvido cjeans tale jteyra

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protein-protein	220
protein	111
networks	77
prediction	48
network	44
evolution	39
interaction-network	39
methods	39
yeast	35
membrane	34
database	29
graphene	28
structure	27
bioinformatics	26
expression	26
review	25
genome	24
human	24
coatomer	23
disease	23
regulation	23
domains	22
predictions	21
genetic	19
biology	18
arf1	17
complexes	17
gene	17
vesicle	17
analysis	16
ecology	16
network_biology	16
potential	16
topology	16
copi	15
data_integration	15
ecm	15
mechanism	15
social	15
golgi	14
curvature	13
modeling	13
proteins	13
tools	13
binding	12
community	12
dynamics	12
genes	12
genomics	12
residue-residue	12
traffic	12
domain	11
lipids	11
molecular-dynamics	11
microarray	10
modularity	10
regression	10
synthetic	10
temperature	10
docking	9
environment	9
interaction	9
lipid	9
litreview2008	9
molecular	9
psychology	9
purification	9
systems_biology	9
arno	8
bec	8
biodiversity	8
conform_change	8
conformation	8
drosophila	8
elastin	8
function	8
gwas	8
in_vivo	8
interactome	8
model_organisms	8
physical	8
systems	8
algorithm	7
body-size	7
clustering	7
drug	7
fluo	7
gef	7
interfaces	7
network_topology	7
phylogeny	7
separation	7
teaching-statistics	7
food	6
liposome	6
power-law	6
ppi	6
protein-ligand	6
statpot	6
surface	6

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