Tag intron [at least 200 articles] Export

Recent papers classified by the tag intron.

	Patterns and rates of intron divergence between humans and chimpanzees. [My Copy] Genome biology, Vol. 8, No. 2. (19 February 2007), R21. by Elodie Gazave, Tomàs Marqués-Bonet, Olga Fernando, Brian Charlesworth, Arcadi Navarro posted to intron humans divergence chimps by gregoryross on 2009-11-05 12:46:06 as along with 6 people and 2 groups robfsouza inesdesantiago nickluscombe lilou cisevol hdopazo EBI-regulation cis-regulatory-evolution
	Mice with a targeted intronic deletion in the Col1a1 gene respond to bleomycin-induced pulmonary fibrosis with increased expression of the mutant allele [My Copy] Matrix Biology, Vol. 18, No. 3. (01 June 1999), pp. 287-294. by S. Hormuzdi posted to regulation intron gene by gregoryross on 2009-11-04 11:07:26 as
	Intron-Mediated Regulation of Gene Expression [My Copy] Nuclear pre-mRNA Processing in Plants (2008), pp. 277-290. by A. B. Rose posted to regulation intron gene by gregoryross on 2009-11-04 11:02:19 as
	Indel-Based Evolutionary Distance and MouseâHuman Divergence [My Copy] Genome Research, Vol. 14, No. 8. (1 August 2004), pp. 1610-1616. by Aleksey Y. Ogurtsov, Shamil Sunyaev, Alexey S. Kondrashov posted to length intron by gregoryross on 2009-11-04 10:27:29 as along with 3 people timflutre emptyhb aprasad
	The architecture of pre-mRNAs affects mechanisms of splice-site pairing [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 45. (8 November 2005), pp. 16176-16181. by Kristi L. Fox-Walsh, Yimeng Dou, Bianca J. Lam, She-pin Hung, Pierre F. Baldi, Klemens J. Hertel posted to length intron by gregoryross on 2009-11-02 15:19:39 as along with 1 person and 1 group kaspermunch Bioinformatics
	The effect of intron length on exon creation ratios during the evolution of mammalian genomes [My Copy] RNA, Vol. 14, No. 11. (16 November 2008), pp. 2261-2273. by Meenakshi Roy, Namshin Kim, Yi Xing, Christopher Lee posted to length intron by gregoryross on 2009-11-02 15:02:30 as along with 3 people inesdesantiago samgj sebastien_vigneau
	Patterns of exon-intron architecture variation of genes in eukaryotic genomes. [My Copy] BMC genomics, Vol. 10 (24 January 2009), 47. by Liucun Zhu, Ying Zhang, Wen Zhang, Sihai Yang, Jian-Qun Q. Chen, Dacheng Tian posted to splicing intron gc exon by sebastien_vigneau on 2009-10-29 21:43:37 as along with 2 people bmajoros druvus
	Nucleosome positioning as a determinant of exon recognition [My Copy] Nature Structural & Molecular Biology, Vol. 16, No. 9. (16 August 2009), pp. 996-1001. by Hagen Tilgner, Christoforos Nikolaou, Sonja Althammer, et al.Michael Sammeth, Miguel Beato, Juan Valcarcel, Roderic Guigo posted to splicing nucleosome-positioning nucleosome intron exon by sebastien_vigneau on 2009-10-29 21:43:00 as along with 4 people inesdesantiago fenghezi RamuAnandakrishnan aalibes
	Chromatin organization marks exon-intron structure. [My Copy] Nature structural & molecular biology, Vol. 16, No. 9. (16 September 2009), pp. 990-995. by Schraga Schwartz, Eran Meshorer, Gil Ast posted to polii nucleosome-positioning nucleosome intron h3k36me3 gc exon by sebastien_vigneau on 2009-10-29 21:42:10 as along with 4 people inesdesantiago fenghezi ericrpaquet ashkelon13
	Construction of expression vectors based on the rice actin 1 (Act1) 5′ region for use in monocot transformation [My Copy] Molecular and General Genetics MGG, Vol. 231, No. 1. (1 December 1991), pp. 150-160. by David McElroy, Alan D. Blowers, Barnabás Jenes, Ray Wu posted to intron gene_enhancement by climb0910 on 2009-10-22 17:27:45 as
	Requirements for intron-mediated enhancement of gene expression in Arabidopsis. [My Copy] RNA, Vol. 8, No. 11. (November 2002), pp. 1444-1453. by Alan B. Rose posted to rose intron arabidopsis alan by climb0910 on 2009-10-22 07:33:54 as along with 1 person byy
	Intron-Mediated Enhancement of Gene Expression Independent of Unique Intron Sequences and Splicing [My Copy] Plant Physiol., Vol. 122, No. 2. (1 February 2000), pp. 535-542. by Alan B. Rose, Jason A. Beliakoff posted to korf intron by climb0910 on 2009-10-21 19:55:24 as
	The effect of intron location on intron-mediated enhancement of gene expression in <i>Arabidopsis</i> [My Copy] The Plant Journal, Vol. 40, No. 5. (December 2004), pp. 744-751. by Alan B. Rose posted to korf intron by climb0910 on 2009-10-21 19:51:32 as
	Intron-mediated enhancement of heterologous gene expression in maize [My Copy] Plant Molecular Biology, Vol. 15, No. 6. (1 December 1990), pp. 913-920. by Desmond Mascarenhas, Irvin J. Mettler, Dorothy A. Pierce, Heather W. Lowe posted to korf intron by climb0910 on 2009-10-21 19:47:21 as
	Three distinct modes of intron dynamics in the evolution of eukaryotes. [My Copy] Genome Res (10 May 2007) by Liran Carmel, Yuri I I. Wolf, Igor B B. Rogozin, Eugene V V. Koonin posted to mode intron dynamics by climb0910 on 2009-10-20 23:54:46 as along with 7 people and 3 groups dchughes penka djkt jwestbrook lilou cabbagezs seitentaisei G4ID King_Lab Genetics-of-Gambling
	A conserved element that stabilizes the group II intron active site [My Copy] RNA, Vol. 14, No. 6. (June 2008), pp. 1048-1056. by Olga Fedorova, Anna M. Pyle posted to intron groupii domain d3 by lukzky on 2009-10-09 15:58:29 as
	Domains 2 and 3 Interact to Form Critical Elements of the Group II Intron Active Site [My Copy] Journal of Molecular Biology, Vol. 330, No. 2. (04 July 2003), pp. 197-209. by Olga Fedorova, Therese Mitros, Anna M. Pyle posted to j23 intron groupii domain d3 d2 by lukzky on 2009-10-09 14:50:39 as
	Group II introns deleted for multiple substructures retain self-splicing activity. [My Copy] Mol. Cell. Biol., Vol. 12, No. 5. (1 May 1992), pp. 1950-1958. by J. L. Koch, S. C. Boulanger, S. D. Dib-Hajj, S. K. Hebbar, P. S. Perlman posted to intron groupii domain deltetion by lukzky on 2009-10-07 11:53:16 as
	The architectural organization and mechanistic function of group II intron structural elements [My Copy] Current Opinion in Structural Biology, Vol. 8, No. 3. (June 1998), pp. 301-308. by P. Qin posted to splicing review intron groupii domain by lukzky on 2009-10-06 12:43:21 as
	An Overview of the Introns-First Theory [My Copy] Journal of Molecular Evolution (24 September 2009) by David Penny, Marc Hoeppner, Anthony Poole, Daniel Jeffares posted to origin life intron evolution by ArtemPankin to the group Khavkin's lab on 2009-09-26 10:55:10 as along with 1 person and 1 group ppgardne Journal picks
	Complex selection on 5â² splice sites in intron-rich organisms [My Copy] Genome Research (10 September 2009) by Manuel Irimia, Scott W. Roy, Daniel E. Neafsey, Josep F. Abril, Jordi Garcia-Fernandez, Eugene V. Koonin posted to intron_evolution intron fungi cryptococcus by stajich to the group Mycology on 2009-09-13 19:17:07 as along with 1 person bpcusack
	Nucleosomes are well positioned in exons and carry characteristic histone modifications [My Copy] Genome Research, Vol. 19, No. 10. (18 October 2009), pp. 1732-1741. by Robin Andersson, Stefan Enroth, Alvaro Rada-Iglesias, Claes Wadelius, Jan Komorowski posted to polymerase nucleosome intron chromatin-organization by inesdesantiago on 2009-09-11 19:48:07 as along with 7 people xianjun owhitney lp2 megraw djkt fenghezi cajunsushi
	Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 36. (5 September 2006), pp. 13427-13432. by Xiang H. F. Zhang, Lawrence A. Chasin posted to intron human genomics exon evolution by operon on 2009-08-31 12:53:42 as along with 5 people and 3 groups eoghanharr aprasad dayjm dchughes paulcartwright G4ID Genetics-of-Gambling BergmanLab
	Intrinsic expression of host genes and intronic miRNAs in prostate carcinoma cells. [My Copy] Cancer cell international, Vol. 9, No. 1. (12 August 2009), 21. by Kavleen Sikand, Stephen D. Slane, Girish C. Shukla posted to mirna intron host cancer by samgj on 2009-08-17 12:01:50 as
	Evidence against the energetic cost hypothesis for the short introns in highly expressed genes [My Copy] BMC Evolutionary Biology, Vol. 8 (20 May 2008), 154. by Yi-Fei Huang, Deng-Ke Niu posted to intron by GustavoLacerda on 2009-08-15 16:02:50 as along with 3 people and 2 groups michaelbarton stajich cisevol Mycology BergmanLab
	Comparative genomic analysis of fungal genomes reveals intron rich ancestors [My Copy] Genome Biology, Vol. 8 (19 October 2007), R223. by Jason E. Stajich, Fred S. Dietrich, Scott W. Roy posted to intron fungi by GustavoLacerda on 2009-08-15 16:02:36 as along with 4 people stajich biomcgary seitentaisei druvus
	The ins and outs of group II introns [My Copy] Trends in Genetics, Vol. 17, No. 6. (1 June 2001), pp. 322-331. by L. Bonen posted to groupii intron review by lukzky on 2009-07-31 19:06:58 as
	Systematic screening of nuclear encoded proteins involved in the splicing metabolism of group II introns in yeast mitochondria [My Copy] Gene, Vol. 354 (18 July 2005), pp. 72-79. by C. Luban, M. Beutel, U. Stahl, U. Schmidt posted to groupii intron protein screening by lukzky on 2009-07-31 15:42:21 as along with 1 person venancio
	Group II introns: structure, folding and splicing mechanism. [My Copy] Biological chemistry, Vol. 388, No. 7. (July 2007), pp. 665-678. by O. Fedorova, N. Zingler posted to catalysis folding groupii intron mechanism splicing by lukzky on 2009-07-28 21:06:52 as
	A Kinetic Intermediate that Regulates Proper Folding of a Group II Intron RNA [My Copy] Journal of Molecular Biology, Vol. 375, No. 2. (11 January 2008), pp. 572-580. by Christina Waldsich, Anna M. Pyle posted to d1 folding groupii intron ribozyme by lukzky on 2009-07-28 20:25:26 as
	Divalent metal ions tune the self-splicing reaction of the yeast mitochondrial group II intron Sc .ai5γ [My Copy] Journal of Biological Inorganic Chemistry, Vol. 13, No. 6. (1 August 2008), pp. 1025-1036. by Michèle Erat, Roland Sigel posted to binding folding groupii inhibition intron metal by lukzky on 2009-07-28 20:22:46 as
	A folding control element for tertiary collapse of a group II intron ribozyme [My Copy] Nat Struct Mol Biol, Vol. 14, No. 1. (03 January 2007), pp. 37-44. by Christina Waldsich, Anna M. Pyle posted to 3rd-collapse d1 folding groupii intron ribozyme by lukzky on 2009-07-28 20:21:15 as
	ExDom: an integrated database for comparative analysis of the exon-intron structures of protein domains in eukaryotes. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (January 2009) by A. Bhasi, P. Philip, V. Manikandan, P. Senapathy posted to db exon intron by guhjy on 2009-07-27 03:39:50 as
	Widespread Positive Selection in Synonymous Sites of Mammalian Genes [My Copy] Mol Biol Evol, Vol. 24, No. 8. (1 August 2007), pp. 1821-1831. by Alissa M. Resch, Liran Carmel, Leonardo Marino-Ramirez, et al.Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Igor B. Rogozin, Eugene V. Koonin posted to evolution_rate evolutionary_constraint gene_expression intron mrna mrna_decay non-synonymous_site selection selection_positive synonymous_site by biomcgary on 2009-07-21 22:17:39 as along with 3 people ilyashl operon bpcusack
	Conserved introns reveal novel transcripts in Drosophila melanogaster. [My Copy] Genome research, Vol. 19, No. 7. (20 July 2009), pp. 1289-1300. by Michael Hiller, Sven Findeiss, Sandro Lein, et al.Manja Marz, Claudia Nickel, Dominic Rose, Christine Schulz, Rolf Backofen, Sonja J. Prohaska, Gunter Reuter, Peter F. Stadler posted to conservation drosophila intron ncrna synteny by stajich to the group Mycology on 2009-07-21 18:22:42 as along with 5 people and 2 groups bpcusack daveGerrard GustavoLacerda megraw ppgardne BergmanLab Journal picks
	Evolutionary Origin and Functions of Retrogene Introns [My Copy] Mol Biol Evol, Vol. 26, No. 9. (1 September 2009), pp. 2147-2156. by Marie Fablet, Manuel Bueno, Lukasz Potrzebowski, Henrik Kaessmann posted to evolution intron retrogene retrotransposition by rschulz on 2009-07-15 13:07:08 as along with 4 people inesdesantiago operon dchughes clearbluespring
	Origins of recently gained introns in Caenorhabditis [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 31. (3 August 2004), pp. 11362-11367. by Avril Coghlan, Kenneth H. Wolfe posted to evolution genome intron by sujaikumar on 2009-07-15 12:24:10 as along with 3 people and 2 groups thegoose2 tharris penka C. elegans / WormBase Nie
	Patterns of gene duplication and intron loss in the ENCODE regions suggest a confounding factor [My Copy] Genomics, Vol. 90, No. 1. (July 2007), pp. 44-48. by Sourav Chatterji, Lior Pachter posted to duplication evolution genome intron by sujaikumar on 2009-07-15 12:15:00 as
	Single nucleotide polymorphism (SNP) discovery in duplicated genomes: intron-primed exon-crossing (IPEC) as a strategy for avoiding amplification of duplicated loci in Atlantic salmon (Salmo salar) and other salmonid fishes [My Copy] BMC Genomics, Vol. 7 (27 July 2006), 192. by Heikki J. Ryynanen, Craig R. Primmer posted to cnv discovery intron sequence snp by jsatkosk on 2009-06-05 23:16:54 as along with 1 person Terkko
	Splicing of a rare class of introns by the U12-dependent spliceosome. [My Copy] Biological chemistry, Vol. 386, No. 8. (August 2005), pp. 713-724. by C. L. Will, R. Lührmann posted to intron review spliceosome u12 by diaz0058 on 2009-04-23 21:32:13 as
	Splicing segregation: the minor spliceosome acts outside the nucleus and controls cell proliferation. [My Copy] Cell, Vol. 131, No. 4. (16 November 2007), pp. 718-729. by H. König, N. Matter, R. Bader, W. Thiele, F. Müller posted to cytoplasm intron minor mitosis splicing by diaz0058 on 2009-04-23 21:26:56 as
	Profile analysis and prediction of tissue-specific CpG island methylation classes [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 116. by Christopher Previti, Oscar Harari, Igor Zwir, Coral D. Val posted to cgi cpg cpg-periodicity dna-methylation dna-structure intron by rschulz on 2009-04-23 08:31:46 as along with 4 people iris42 dswan TRHvidsten reyez
	Biological function of unannotated transcription during the early development of Drosophila melanogaster [My Copy] Nature Genetics, Vol. 38, No. 10. (03 September 2006), pp. 1151-1158. by Robert J. Manak, Sujit Dike, Victor Sementchenko, et al.Philipp Kapranov, Frederic Biemar, Jeff Long, Jill Cheng, Ian Bell, Srinka Ghosh, Antonio Piccolboni, Thomas R. Gingeras posted to genome-organization intron by inesdesantiago on 2009-04-16 17:31:11 as along with 11 people and 7 groups roys ThomasDOtto daveGerrard GeeSharpMinor emptyhb dpollard neveaire djkt wrowell Stew xingxu BergmanLab Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience Cline_lab
	Hard tick calreticulin (CRT) gene coding regions have only one intron with conserved positions and variable sizes. [My Copy] The Journal of parasitology, Vol. 91, No. 6. (December 2005), pp. 1326-1331. by G. Xu, Q. Q. Fang, Y. Sun, J. E. Keirans, L. A. Durden posted to calreticulin intron ixodes molecular_analysis by carpi on 2009-04-13 22:16:28 as
	Introns are necessary for mRNA accumulation in Schizophyllum commune. [My Copy] Molecular microbiology, Vol. 32, No. 4. (May 1999), pp. 681-689. by L. G. Lugones, K. Scholtmeijer, R. Klootwijk, J. G. Wessels posted to gene_regulation intron posttranscriptional schizophyllum splicing by stajich to the group Mycology on 2009-03-29 00:44:53 as
	Differential chromatin marking of introns and expressed exons by H3K36me3. [My Copy] Nature genetics (1 February 2009) by Paulina Kolasinska-Zwierz, Thomas Down, Isabel Latorre, Tao Liu, X Shirley S. Liu, Julie Ahringer posted to h3k36 intron by inesdesantiago on 2009-03-06 15:02:17 as along with 8 people and 1 group dpollard bpcusack absterga fenghezi Dulcinea dchughes djkt WanderingAengus RockmanLab
	Processing the H3K36me3 signature [My Copy] Nat Genet, Vol. 41, No. 3. (01 March 2009), pp. 270-271. by Robert J. Sims III, Danny Reinberg posted to chromatin exon h3k36 intron by clearbluespring on 2009-03-05 18:23:31 as along with 6 people tonamswish YukaH bpcusack fenghezi Dulcinea provero
	Characteristic differences between the promoters of intron-containing and intronless ribosomal protein genes in yeast. [My Copy] BMC research notes, Vol. 1 (2008) by J. Zhang, M. Vingron, S. Roepcke posted to intron yeast by cisevol on 2009-02-17 09:57:43 as
	Intron length and accelerated 3' gene evolution [My Copy] Genomics, Vol. 88, No. 6. (December 2006), pp. 682-689. by Clara S. Tang, Yong Z. Zhao, David K. Smith, Richard J. Epstein posted to correlations cpg cryptic evolution intron by inesdesantiago on 2009-02-16 01:03:21 as along with 2 people robfsouza aprasad
	Patterns of intron gain and conservation in eukaryotic genes [My Copy] BMC Evolutionary Biology, Vol. 7 (12 October 2007), 192. by Liran Carmel, Igor B. Rogozin, Yuri I. Wolf, Eugene V. Koonin posted to evolution intron by inesdesantiago on 2009-02-16 01:02:25 as along with 1 person seitentaisei

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evolution	91
splicing	46
celegans	24
exon	24
nematode	23
c_elegans	22
caenorhabditis_elegans	22
elegans	22
wormbase	22
article	18
fungi	17
mirna	16
intron_evolution	14
groupii	13
amino_acid_sequence	12
cloned_genes	12
dna_sequence	12
gene	11
human	11
comp-vertebrate	10
intron_loss	10
length	10
review	10
rna_processing	10
microrna	9
yeast	9
arabidopsis	8
base_sequence	8
caenorhabditis_genetics	8
f11c33	8
genome	8
intron_gain	8
molecular_sequence_data	8
muscle-myosin	8
protein	8
unc-54	8
drosophila	7
mrna	7
rna	7
transposon	7
dna	6
domain	6
gene_family	6
mutagenesis	6
ncrna	6
nucleosome	6
rna_splicing	6
expression	5
ribozyme	5
sequence	5
transcription	5
alternative_splicing	4
branchpoint	4
c15a115	4
c46a53	4
cloning_molecular	4
clostridium	4
col-14	4
col-19	4
col-2	4
col-7	4
col-8	4
collagen	4
cryptococcus	4
dna_homology	4
f11h83	4
f23h124	4
folding	4
genes_reiterated	4
h3k36me3	4
insertion	4
introns	4
microarray	4
mutant	4
network	4
phylogeny	4
prediction	4
promoter_regions_genetics	4
regulation	4
restriction_map	4
retention	4
retrotransposon	4
ribosome	4
rol-8	4
saccharomyces	4
sqt-3	4
transcriptome	4
unread	4
w01b67	4
zk11931	4
zk12903	4
coelomata	3
conservation	3
cpg	3
dna-methylation	3
ecdysozoa	3
genomics	3
neurospora	3
polymorphism	3
structure	3

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