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Recent papers classified by the tag ligand-protein-binding.

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	SitesIdentify: a protein functional site prediction tool [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 379. by Tracey Bray, Pedro Chan, Salim Bougouffa, Richard Greaves, Andrew Doig, Jim Warwicker posted to ligand-protein-binding binding_site by apaydin on 2009-12-05 18:51:41 as along with 4 people and 3 groups sillitoe jforment kshameer renatomilani Orengo Group Journal Picks Bioinformatics Core Service structural_bioinformatics
	Prediction of protein binding sites in protein structures using hidden Markov support vector machine [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 381. by Bin Liu, Xiaolong Wang, Lei Lin, Buzhou Tang, Qiwen Dong, Xuan Wang posted to ligand-protein-binding binding_site by apaydin on 2009-12-05 18:51:30 as along with 5 people and 1 group RebeccaHamer sillitoe dakelley peteruetz poirel Orengo Group Journal Picks
	Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 5, No. 12. (4 December 2009), e1000585. by John A. Capra, Roman A. Laskowski, Janet M. Thornton, Mona Singh, Thomas A. Funkhouser posted to ligand-protein-binding binding_site by apaydin on 2009-12-05 16:13:48 as along with 3 people and 1 group sobolevnrm hryk kshameer structural_bioinformatics
	On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Abdullah Kahraman, Richard J. Morris, Roman A. Laskowski, Angelo D. Favia, Janet M. Thornton posted to ligand-protein-binding by apaydin on 2009-11-23 20:51:27 as along with 2 people HawkinsJohnC ahmetbakan
	EASYMIFS and SITEHOUND: a toolkit for the identification of ligand-binding sites in protein structures [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3185-3186. by Dario Ghersi, Roberto Sanchez posted to prediction ligand-protein-binding binding_site by apaydin on 2009-11-23 20:46:07 as along with 1 person and 1 group zimbo1 Orengo Group Journal Picks
	The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 34. (25 August 2009), pp. 14349-14354. by Ahmet Bakan, Ivet Bahar posted to ligand-protein-binding protein_dynamics by apaydin on 2009-10-04 18:02:10 as along with 6 people and 1 group mittinatten ahmetbakan anuragsethi jmccammon okapi boris_aguilar McCammon
	Molecular mechanics methods for predicting protein-ligand binding. [My Copy] Physical chemistry chemical physics : PCCP, Vol. 8, No. 44. (28 November 2006), pp. 5166-5177. by Niu Huang, Chakrapani Kalyanaraman, Katarzyna Bernacki, Matthew P. Jacobson posted to ligand-protein-binding molecular_mechanics by apaydin on 2009-08-05 07:26:14 as along with 4 people anuragsethi mijogiffin ucbcjbm superpyrin
	Blind docking of pharmaceutically relevant compounds using RosettaLigand [My Copy] Protein Science, Vol. 18, No. 9. (24 June 2009), pp. 1998-2002. by Ian W. Davis, Kaushik Raha, Martha S. Head, David Baker posted to docking ligand-protein-binding by apaydin on 2009-07-04 08:48:01 as along with 1 person klexa
	Prediction of sub-cavity binding preferences using an adaptive physicochemical structure representation. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i296-304. by Izhar Wallach, Ryan H. Lilien posted to ligand-protein-binding by apaydin on 2009-06-07 06:43:34 as
	FINDSITE<sup>LHM</sup>: A Threading-Based Approach to Ligand Homology Modeling [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (5 June 2009), e1000405. by Michal Brylinski, Jeffrey Skolnick posted to ligand-protein-binding by apaydin on 2009-06-06 06:21:48 as along with 6 people and 2 groups phoenixzxl nickolay kshameer superpyrin reyez barry structural_bioinformatics McCammon
	Computational modeling of the sugar-lectin interaction. [My Copy] Advanced drug delivery reviews, Vol. 56, No. 4. (3 March 2004), pp. 437-457. by D. Neumann, C. M. Lehr, H. P. Lenhof, O. Kohlbacher posted to ligand-protein-binding by apaydin on 2009-03-03 18:22:11 as along with 1 person flbarroso
	The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding [My Copy] Bioinformatics, Vol. 25, No. 5. (1 March 2009), pp. 615-620. by Izhar Wallach, Ryan Lilien posted to database ligand-protein-binding by apaydin on 2009-02-25 19:36:09 as along with 5 people ucbcjbm zwang reyez carlosjavierna pauldobson
	Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i105-111. by Rafael Najmanovich, Natalja Kurbatova, Janet Thornton posted to ligand-protein-binding by apaydin on 2008-11-04 23:14:41 as along with 7 people iaolier krapnik ramensky tjimenez neils reyez nickolay
	From the Similarity Analysis of Protein Cavities to the Functional Classification of Protein Families Using Cavbase [My Copy] Journal of Molecular Biology, Vol. 359, No. 4. (16 June 2006), pp. 1023-1044. by Daniel Kuhn, Nils Weskamp, Stefan Schmitt, Eyke Hullermeier, Gerhard Klebe posted to docking functional_classification ligand-protein-binding protein protein_ligand_binding protein_structure by apaydin on 2006-06-11 16:26:43 as along with 2 people nickolay stege
	Flexible ligand docking using conformational ensembles. [My Copy] Protein Sci, Vol. 7, No. 4. (April 1998), pp. 938-950. by D. M. Lorber, B. K. Shoichet posted to binding ensembles ligand-protein-binding rotamer by apaydin on 2006-03-09 20:25:26 as

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