Tag massspec [46 articles] Export

Recent papers classified by the tag massspec.

	High-performance hardware implementation of a parallel database search engine for real-time peptide mass fingerprinting [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. 1498-1502. by Istvan A. Bogdan, Jenny Rivers, Robert J. Beynon, Daniel Coca posted to massspec fpga by aheilbut on 2009-08-20 00:19:49 as
	Quadrupole-time-of-flight mass spectrometer modified for higher-energy dissociation reduces protein assemblies to peptide fragments. [My Copy] Analytical chemistry, Vol. 81, No. 3. (1 February 2009), pp. 1270-1274. by Justin L. Benesch, Brandon T. Ruotolo, Frank Sobott, et al.Jason Wildgoose, Anthony Gilbert, Robert Bateman, Carol V. Robinson posted to aug09survey massspec proteincomplex by noraziz on 2009-08-03 15:45:42 as
	Gas-Phase Unfolding and Disassembly Reveals Stability Differences in Ligand-Bound Multiprotein Complexes [My Copy] Chemistry & Biology, Vol. 16, No. 4. (24 April 2009), pp. 382-390. by Suk-Joon Hyung, Carol V. Robinson, Brandon T. Ruotolo posted to aug09survey massspec proteincomplex litreview08-2009 by noraziz on 2009-08-03 15:20:35 as
	Mass spectrometry of membrane transporters reveals subunit stoichiometry and interactions. [My Copy] Nature methods, Vol. 6, No. 8. (05 August 2009), pp. 585-587. by Nelson P. Barrera, Shoshanna C. Isaacson, Min Zhou, et al.Vassiliy N. Bavro, Alex Welch, Theresia A. Schaedler, Markus A. Seeger, Ricardo Núñez N. Miguel, Vladimir M. Korkhov, Hendrik W. van Veen, Henrietta Venter, Adrian R. Walmsley, Christopher G. Tate, Carol V. Robinson posted to aug09survey massspec ppi proteincomplex by noraziz on 2009-08-03 15:16:40 as
	An oligomeric signalling platform formed by the toll-like receptor signal transducers MyD88 and IRAK4. [My Copy] The Journal of biological chemistry (10 July 2009) by Precious G. Motshwene, Martin C. Moncrieffe, Jorg Gunter G. Grossmann, et al.Cheng C. Kao, Murali Ayaluru, Alan M. Sandercock, Carol V. Robinson, Eicke Latz, Nicholas J. Gay posted to aug09survey cryoem massspec ppi proteincomplex by noraziz on 2009-08-03 15:15:27 as
	Multiple Reaction Monitoring-based, Multiplexed, Absolute Quantitation of 45 Proteins in Human Plasma [My Copy] Mol Cell Proteomics, Vol. 8, No. 8. (1 August 2009), pp. 1860-1877. by Michael A. Kuzyk, Derek Smith, Juncong Yang, et al.Tyra J. Cross, Angela M. Jackson, Darryl B. Hardie, N. Leigh Anderson, Christoph H. Borchers posted to assay massspec multiplex protein by williamgunn on 2009-06-09 00:19:04 as along with 3 people guhjy fishtank brianb
	VMD: Visual molecular dynamics [My Copy] Journal of Molecular Graphics, Vol. 14, No. 1. (February 1996), pp. 33-38. by W. Humphrey posted to ache amber amyloid beta-propeller binary binarytrehalose desmond ethanol gaff glycerol hsa hydrationwater hydrogenbond icenano iqt letter lysozyme massspec mdintro ornl pdb reading research_intro residence_times rotationaldiff slaving structure_function swell td ten_rules tip3p tobias trehalose water by pavanghatty on 2009-04-26 01:52:09 as along with 6 people and 1 group whitead csrocha r2s2 choonpeng RamuAnandakrishnan tji Jiang Research Group
	Algorithms for macromolecular dynamics and constraint dynamics [My Copy] Molecular Physics, Vol. 34, No. 5. (1977), pp. 1311-1327. by W. F. van Gunsteren, H. J. C. Berendsen posted to massspec by pavanghatty on 2009-04-03 18:08:57 as along with 1 person stephenbond
	A smooth particle mesh Ewald method [My Copy] The Journal of Chemical Physics, Vol. 103, No. 19. (1995), pp. 8577-8593. by Ulrich Essmann, Lalith Perera, Max L. Berkowitz, Tom Darden, Hsing Lee, Lee G. Pedersen posted to massspec by pavanghatty on 2009-04-03 18:00:06 as along with 15 people and 2 groups jmparks rpetrenko A_Coletta_Thesis r2s2 charris5 sobolevnrm choonpeng lillekatt and_ped10 easybakemuffin RamuAnandakrishnan ashaytan mikaellund 6rheology jteyra Structural Biology Group TorVergata baker-group
	Micelles Protect Membrane Complexes from Solution to Vacuum [My Copy] Science, Vol. 321, No. 5886. (11 July 2008), pp. 243-246. by Nelson P. Barrera, Natalie Di Bartolo, Paula J. Booth, Carol V. Robinson posted to massspec membrane proteincomplex by noraziz on 2008-12-16 14:45:53 as
	Matched filtering with background suppression for improved quality of base peak chromatograms and mass spectra in liquid chromatography–mass spectrometry [My Copy] Analytica Chimica Acta, Vol. 454, No. 2. (11 March 2002), pp. 167-184. by Rolf Danielsson, Dan Bylund, Karin E. Markides posted to massspec metabolomics normalisation statistics by talponer on 2008-12-02 09:59:17 as along with 1 person robert
	Stepwise evolution of protein native structure with electrospray into the gas phase, 10−12 to 102 s [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 47. (25 November 2008), pp. 18145-18152. by Kathrin Breuker, Fred W. Mclafferty posted to massspec project by lukzky on 2008-11-28 14:25:57 as
	A common open representation of mass spectrometry data and its application to proteomics research [My Copy] Nature Biotechnology, Vol. 22, No. 11. (04 November 2004), 1459. by Patrick G. A. Pedrioli, Jimmy K. Eng, Robert Hubley, et al.Mathijs Vogelzang, Eric W. Deutsch, Brian Raught, Brian Pratt, Erik Nilsson, Ruth H. Angeletti, Rolf Apweiler, Kei Cheung, Catherine E. Costello, Henning Hermjakob, Sequin Huang, Randall K. Julian, Eugene Kapp, Mark E. Mccomb, Stephen G. Oliver, Gilbert Omenn, Norman W. Paton, Richard Simpson, Richard Smith, Chris F. Taylor, Weimin Zhu, Ruedi Aebersold posted to format massspec metabolomics statistics by talponer on 2008-11-21 13:54:43 as along with 9 people and 1 group moonhouse robert irenas lwilliams andytseng agileproteomics Gehrke nedwards alanrw dbk-lab
	Mass spectrometry-based metabolomics. [My Copy] Mass Spectrom Rev (18 August 2006) by Katja Dettmer, Pavel A A. Aronov, Bruce D D. Hammock posted to massspec metabolomics by talponer on 2008-11-20 16:20:59 as along with 5 people robert guhjy cite0000 egonw BIBLIOma
	Comparative LC-MS: A landscape of peaks and valleys [My Copy] PROTEOMICS, Vol. 8, No. 4. (February 2008), pp. 731-749. by Antoine H. P. America, Jan H. G. Cordewener posted to massspec review by talponer on 2008-11-19 16:15:13 as along with 4 people nedwards brianb guhjy olberd
	Making sense of high-throughput protein-protein interaction data. [My Copy] Stat Appl Genet Mol Biol, Vol. 3, No. 1. (2004) by D. Scholtens, R. Gentleman posted to massspec by talponer on 2008-11-19 15:55:27 as along with 1 person koller
	LC-MSsim - a simulation software for Liquid Chromatography Mass Spectrometry data [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Ole S. Trieglaff, Nico Pfeifer, Clemens Gropl, Oliver Kohlbacher, Knut Reinert posted to algorithm benchmark lc-ms-ms massspec metabolomics proteomics by groepl on 2008-10-29 14:45:58 as along with 5 people katerinakal guhjy renatomilani nuin rt
	Quantitative analysis of EGFRvIII cellular signaling networks reveals a combinatorial therapeutic strategy for glioblastoma [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 31. (31 July 2007), pp. 12867-12872. by Paul H. Huang, Akitake Mukasa, Rudy Bonavia, et al.Ryan A. Flynn, Zachary E. Brewer, Webster K. Cavenee, Frank B. Furnari, Forest M. White posted to combinations massspec by aheilbut on 2008-07-21 19:33:40 as along with 1 person cdppublications
	OpenMS - an open-source software framework for mass spectrometry. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by M. Sturm, A. Bertsch, C. Gröpl, et al.A. Hildebrandt, R. Hussong, E. Lange, N. Pfeifer, O. Schulz-Trieglaff, A. Zerck, K. Reinert, O. Kohlbacher posted to lc-ms-ms massspec proteomics by groepl on 2008-06-30 23:55:15 as along with 7 people alyssaporter robert nedwards guhjy neils brianb olberd
	Mass spectrometry-based proteomics [My Copy] Nature, Vol. 422, No. 6928. (13 March 2003), pp. 198-207. by Ruedi Aebersold, Matthias Mann posted to massspec review by carlk on 2008-06-12 18:00:40 as along with 9 people nedwards nzm emmackinnon jmeppley dgront frohike sverzijl olberd taenneken
	Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (15 April 2008), 197. by Yoginder Dandass, Shane Burgess, Mark Lawrence, Susan Bridges posted to fpga massspec by nitiniitk on 2008-04-17 07:09:16 as
	Annotation of LC/ESI-MS Mass Signals [My Copy] Bioinformatics Research and Development (2007), pp. 371-380. by Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann posted to massspec metabolomics by groepl on 2008-03-10 17:53:25 as
	MathDAMP: a package for differential analysis of metabolite profiles [My Copy] BMC Bioinformatics, Vol. 7 (13 December 2006), 530. by Richard Baran, Hayataro Kochi, Natsumi Saito, et al.Makoto Suematsu, Tomoyoshi Soga, Takaaki Nishioka, Martin Robert, Masaru Tomita posted to massspec metabolomics by groepl on 2007-12-20 21:28:31 as
	AYUMS: an algorithm for completely automatic quantitation based on LC-MS/MS proteome data and its application to the analysis of signal transduction [My Copy] BMC Bioinformatics, Vol. 8 (18 January 2007), 15. by Ayumu Saito, Masao Nagasaki, Masaaki Oyama, et al.Hiroko Kozuka-Hata, Kentaro Semba, Sumio Sugano, Tadashi Yamamoto, Satoru Miyano posted to massspec proteomics by groepl on 2007-12-20 21:18:38 as along with 1 person guhjy
	msmsEval: Tandem mass spectral quality assignment for high-throughput proteomics [My Copy] BMC Bioinformatics, Vol. 8 (09 February 2007), 51. by Jason W. H. Wong, Matthew J. Sullivan, Hugh M. Cartwright, Gerard Cagney posted to identification massspec proteomics by groepl on 2007-12-20 20:45:56 as
	Normalization method for metabolomics data using optimal selection of multiple internal standards [My Copy] BMC Bioinformatics, Vol. 8 (15 March 2007), 93. by Marko Sysi-Aho, Mikko Katajamaa, Laxman Yetukuri, Matej Oresic posted to massspec proteomics by groepl on 2007-12-20 20:40:36 as along with 2 people mdharsee BIBLIOma
	A mass accuracy sensitive probability based scoring algorithm for database searching of tandem mass spectrometry data [My Copy] BMC Bioinformatics, Vol. 8 (20 April 2007), 133. by Hua Xu, Michael A. Freitas posted to identification massspec proteomics by groepl on 2007-12-20 20:28:30 as along with 2 people kallberg guhjy
	Quantitative quality-assessment techniques to compare fractionation and depletion methods in SELDI-TOF mass spectrometry experiments. [My Copy] Bioinformatics (11 July 2007) by Jaroslaw Harezlak, Mike Wang, David Christiani, Xihong Lin posted to massspec proteomics statistics by groepl on 2007-12-20 19:58:28 as along with 1 person guhjy
	SAMPI: Protein identification with Mass Spectra Alignments [My Copy] BMC Bioinformatics, Vol. 8 (26 March 2007), 102. by Hans-Michael Kaltenbach, Andreas Wilke, Sebastian Boecker posted to identification massspec proteomics by groepl on 2007-12-20 19:52:24 as along with 1 person BIBLIOma
	MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data [My Copy] BMC Bioinformatics, Vol. 8 (13 June 2007), 197. by Juergen Hartler, Gerhard G. Thallinger, Gernot Stocker, et al.Alexander Sturn, Thomas R. Burkard, Erik Korner, Robert Rader, Andreas Schmidt, Karl Mechtler, Zlatko Trajanoski posted to massspec proteomics by groepl on 2007-11-02 15:21:57 as along with 4 people robert guhjy Thomasah brianb
	Peer Group Vector Median Filter [My Copy] Pattern Recognition (2007), pp. 314-323. by Bogdan Smolka posted to massspec signalproc statistics by groepl on 2007-10-12 15:34:19 as
	Wavelets in bioinformatics and computational biology: state of art and perspectives [My Copy] Bioinformatics, Vol. 19, No. 1. (1 January 2003), pp. 2-9. by Pietro Lio posted to massspec wavelet by groepl on 2007-10-10 13:20:18 as along with 4 people and 1 group reyntjesr humburg polivares timflutre BergmanLab
	ProMEX: a mass spectral reference database for proteins and protein phosphorylation sites [My Copy] BMC Bioinformatics, Vol. 8 (23 June 2007), 216. by Jan Hummel, Michaela Niemann, Stefanie Wienkoop, et al.Waltraud Schulze, Dirk Steinhaeuser, Joachim Selbig, Dirk Walther, Wolfram Weckwerth posted to massspec proteomics by groepl on 2007-10-02 00:27:33 as along with 2 people guhjy dullhunk
	Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Witold Wolski, Maciej Lalowski, Peter Martus, et al.Ralf Herwig, Patrick Giavalisco, Johan Gobom, Albert Sickmann, Hans Lehrach, Knut Reinert posted to massspec proteomics by groepl on 2007-10-02 00:13:18 as
	Feature Extraction for Mass Spectrometry Data [My Copy] Life System Modeling and Simulation (2007), pp. 188-196. by Yihui Liu posted to massspec proteomics by groepl on 2007-09-21 10:30:16 as
	Effect of the proportion of organic material in bone on thermal decomposition of bone mineral: An investigation of a variety of bones from different species using thermogravimetric analysis coupled to mass spectrometry, high-temperature X-ray diffraction, and fourier transform infrared spectroscopy [My Copy] Calcif. Tissue Int., Vol. 75, No. 4. (2004), pp. 321-328. by L. D. Mkukuma, J. M. S. Skakle, I. R. Gibson, C. T. Imrie, R. M. Aspden, D. W. L. Hukins posted to bmd bone ftir human-animal massspec material-properties organic xray-diffraction by ashko on 2007-09-21 07:38:22 as
	Computational prediction of proteotypic peptides for quantitative proteomics [My Copy] Nature Biotechnology, Vol. 25, No. 1. (31 December 2006), pp. 125-131. by Parag Mallick, Markus Schirle, Sharon S. Chen, et al.Mark R. Flory, Hookeun Lee, Daniel Martin, Jeffrey Ranish, Brian Raught, Robert Schmitt, Thilo Werner, Bernhard Kuster, Ruedi Aebersold posted to massspec proteomics by groepl on 2007-09-18 12:14:28 as along with 3 people fishtank guhjy nedwards
	Introduction to Computational Proteomics [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (27 July 2007), e114. by Jacques Colinge, Keiryn L. Bennett posted to massspec proteomics by groepl on 2007-09-18 12:13:23 as along with 11 people and 1 group phoenixzxl alexgeorgiou Borelli daforerog druvus giovenko guhjy chad_davis anwazo zwang cabbagezs Bioinformatics
	Proteomic analysis of phosphorylation, oxidation and nitrosylation in signal transduction. [My Copy] Biochim Biophys Acta, Vol. 1764, No. 12. (December 2006), pp. 1823-1841. by C. M. Spickett, A. R. Pitt, N. Morrice, W. Kolch posted to massspec proteomics by groepl on 2007-09-17 18:11:40 as along with 1 person guhjy
	Phosphotyrosine interactome of the ErbB-receptor kinase family [My Copy] Molecular Systems Biology, Vol. 1, No. 1. (25 May 2005), pp. msb4100012-E1-msb4100012-E13. by Waltraud X. Schulze, Lei Deng, Matthias Mann posted to egfr erbb massspec proteomic by klu on 2007-09-14 18:58:58 as along with 3 people and 2 groups guhjy jfr rhem1224 TCR_Signaling SysbioMPI-TCells
	Modeling HER2 Effects on Cell Behavior from Mass Spectrometry Phosphotyrosine Data. [My Copy] PLoS Comput Biol, Vol. 3, No. 1. (5 January 2007) by Neil Kumar, Alejandro Wolf-Yadlin, Forest M M. White, Douglas A A. Lauffenburger posted to erbb2 massspec migration by pjasper on 2007-05-08 18:12:38 as along with 2 people jfr cdpwebadmin
	Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization. [My Copy] Clin Chem, Vol. 49, No. 10. (October 2003), pp. 1615-1623. by K. R. Coombes, H. A. Fritsche, C. Clarke, et al.J. N. Chen, K. A. Baggerly, J. S. Morris, L. C. Xiao, M. C. Hung, H. M. Kuerer posted to massspec by Gehrke on 2007-04-19 23:55:36 as along with 2 people gorlitsky nicholso
	LIMPIC: a computational method for the separation of protein MALDI-TOF-MS signals from noise. [My Copy] BMC bioinformatics, Vol. 8 (26 March 2007), 101. by Dante Mantini, Francesca Petrucci, Damiana Pieragostino, et al.Piero Del Boccio, Marta Di Nicola, Carmine Di Ilio, Giorgio Federici, Paolo Sacchetta, Silvia Comani, Andrea Urbani posted to massspec by Gehrke on 2007-04-04 01:15:24 as along with 3 people robert olberd BIBLIOma
	Effects of HER2 overexpression on cell signaling networks governing proliferation and migration [My Copy] Mol Syst Biol, Vol. 2 (3 October 2006) by Alejandro Wolf-Yadlin, Neil Kumar, Yi Zhang, et al.Sampsa Hautaniemi, Muhammad Zaman, Hyung-Do Kim, Viara Grantcharova, Douglas A. Lauffenburger, Forest M. White posted to cancer massspec signaling by balabu on 2006-10-31 18:35:01 as along with 3 people and 1 group jfr cdppublications pjasper CDP
	Mass Spectrometry and Protein Analysis [My Copy] Science, Vol. 312, No. 5771. (14 April 2006), pp. 212-217. by Bruno Domon, Ruedi Aebersold posted to massspec by balabu on 2006-04-14 15:47:53 as along with 3 people raiyar sverzijl jo_davies
	Mass spectrometry-based proteomics turns quantitative. [My Copy] Nat Chem Biol, Vol. 1, No. 5. (October 2005), pp. 252-262. by S. E. Ong, M. Mann posted to massspec by balabu on 2006-02-28 19:10:11 as along with 1 person nedwards

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proteomics	15
metabolomics	9
statistics	6
proteincomplex	5
aug09survey	4
review	4
identification	3
format	2
fpga	2
lc-ms-ms	2
normalisation	2
ppi	2
ache	1
algorithm	1
amber	1
amyloid	1
assay	1
benchmark	1
beta-propeller	1
binary	1
binarytrehalose	1
bmd	1
bone	1
cancer	1
combinations	1
cryoem	1
desmond	1
egfr	1
erbb	1
erbb2	1
ethanol	1
ftir	1
gaff	1
glycerol	1
hsa	1
human-animal	1
hydrationwater	1
hydrogenbond	1
icenano	1
iqt	1
letter	1
litreview08-2009	1
lysozyme	1
material-properties	1
mdintro	1
membrane	1
migration	1
multiplex	1
organic	1
ornl	1
pdb	1
project	1
protein	1
proteomic	1
reading	1
research_intro	1
residence_times	1
rotationaldiff	1
signaling	1
signalproc	1
slaving	1
structure_function	1
swell	1
td	1
ten_rules	1
tip3p	1
tobias	1
trehalose	1
water	1
wavelet	1
xray-diffraction	1

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