Tag mathematical_model [at least 200 articles] Export

Recent papers classified by the tag mathematical_model.

	Measurement, Modeling and Analysis of Peer-to-Peer VoD System [My Copy] Communications and Mobile Computing, 2009. CMC '09. WRI International Conference on, Vol. 3 (8 January 2009), pp. 273-278. by Yi Zheng, Changjia Chen, Chunxi Li posted to video_on_demand p2p measurement mathematical_model by joydeep on 2009-11-26 14:22:31 as
	The multi-step phosphorelay mechanism of unorthodox two-component systems in E. coli realizes ultrasensitivity to stimuli while maintaining robustness to noises. [My Copy] Computational biology and chemistry, Vol. 30, No. 6. (December 2006), pp. 438-444. by Jeong-Rae R. Kim, Kwang-Hyun H. Cho posted to two-component_system simulation sensitivity robustness phosphorylation noise mathematical_model e_coli bacteria by jjray on 2009-11-19 18:06:21 as
	A model of the cell-autonomous mammalian circadian clock [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 27. (7 July 2009), pp. 11107-11112. by Henry P. Mirsky, Andrew C. Liu, David K. Welsh, Steve A. Kay, Francis J. Doyle posted to sensitivity_analysis mathematical_model feedback_loops evolutionary_strategy circadian_clock by samubernard on 2009-11-16 21:05:07 as
	Diffusion Controlled Reactions, Fluctuation Dominated Kinetics, and Living Cell Biochemistry [My Copy] (12 Nov 2009) by Zoran Konkoli posted to method mathematical_model diffusion biophysics biochemistry by jjray on 2009-11-13 16:03:34 as
	Dissociation of circadian and light inhibition of melatonin release through forced desynchronization in the rat. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 41. (13 October 2009), pp. 17540-17545. by Michael D. Schwartz, Cheryl Wotus, Tiecheng Liu, et al.W. Otto Friesen, Jimo Borjigin, Gisele A. Oda, Horacio O. de la Iglesia posted to scn mathematical_model desynchronization circadian_rhythm by samubernard on 2009-11-07 11:01:26 as
	How Good Are Neuron Models? [My Copy] Science, Vol. 326, No. 5951. (16 October 2009), pp. 379-380. by Wulfram Gerstner, Richard Naud posted to review mathematical_model by kostasl on 2009-10-29 01:01:22 as along with 5 people flieder fpbattaglia josepe sen_cheng fbaroni
	Developmental Robotics: Manifesto and Application [My Copy] Philosophical Transactions: Mathematical, Physical and Engineering Sciences, Vol. 361, No. 1811. (2003), pp. 2187-2206. by Terry Elliott, Nigel R. Shadbolt posted to robotics molecular_factors mathematical_model manifesto adaptability by kostasl on 2009-10-29 00:57:30 as along with 1 person sergiodavies
	When a predator avoids infected prey: a model-based theoretical study [My Copy] Math Med Biol (7 October 2009), dqp007. by Mainul Haque, David Greenhalgh posted to mathematical_model by rmagf on 2009-10-28 05:28:57 as
	Towards a mathematical theory of cortical micro-circuits. [My Copy] PLoS computational biology, Vol. 5, No. 10. (9 October 2009), e1000532. by Dileep George, Jeff Hawkins posted to neurodynamics network modeling mathematical_model cortex by josepe on 2009-10-23 01:48:08 as along with 6 people braskob meduz watson flieder matjes BBoyButzemann
	Coexistence of Flexibility and Stability of Proteins: An Equation of State [My Copy] PLoS ONE, Vol. 4, No. 10. (9 October 2009), e7296. by Marina de Leeuw, Shlomi Reuveni, Joseph Klafter, Rony Granek posted to stability protein_folding mathematical_model flexibility by jjray on 2009-10-15 16:44:14 as
	Listening to the noise: random fluctuations reveal gene network parameters. [My Copy] Molecular systems biology, Vol. 5 (13 October 2009) by Brian Munsky, Brooke Trinh, Mustafa Khammash posted to noise network mathematical_model gene_expression by jjray on 2009-10-15 16:22:42 as along with 2 people pmalkus TRHvidsten
	Multi-species stochastic models: small RNA regulation of gene expression [My Copy] (13 Oct 2009) by Vlad Elgart posted to stochastic rna mathematical_model gene_regulation gene_expression biophysics by jjray on 2009-10-14 15:44:29 as
	Bacillus subtilis spreads by surfing on waves of surfactant [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 43. (27 October 2009), pp. 18109-18113. by Thomas E. Angelini, Marcus Roper, Roberto Kolter, David A. Weitz, Michael P. Brenner posted to spatial motility mathematical_model bacteria bacillus_subtilis by jjray on 2009-10-14 15:37:22 as
	On Bootstrap Percolation in Living Neural Networks [My Copy] (4 Oct 2009) by Hamed Amini posted to theory percolation neuroscience network mathematical_model by jjray on 2009-10-13 19:34:33 as
	Conversion of graded to binary response in an activator-repressor system [My Copy] (8 Oct 2009) by Rajesh Karmakar posted to stochastic mathematical_model gene_regulation gene_expression bistability by jjray on 2009-10-13 19:25:17 as
	Efficient modelling of spiking neural networks on a scalable chip multiprocessor [My Copy] Neural Networks, 2008. IJCNN 2008. (IEEE World Congress on Computational Intelligence). IEEE International Joint Conference on (26 September 2008), pp. 2812-2819. by Xin Jin, S. B. Furber, J. V. Woods posted to neural_simulation neural_network_simulation mathematical_model artificial_neural_networks by sergiodavies on 2009-10-13 18:05:23 as
	Quantifying mRNA synthesis and decay rates using small RNAs [My Copy] (11 Oct 2009) by Vlad Elgart, Tao Jia, Rahul Kulkarni posted to stochastic rate mrna mathematical_model by jjray on 2009-10-13 16:38:07 as
	The speed of evolution in large asexual populations [My Copy] (1 Oct 2009) by Su-Chan Park, Damien Simon, Joachim Krug posted to population mutation mathematical_model evolution by jjray on 2009-10-02 15:53:12 as along with 1 person docv
	Induction Kinetics of a Conditional pH Stress Response System in Escherichia coli [My Copy] Journal of Molecular Biology (21 August 2009) by Georg Fritz, Christiane Koller, Korinna Burdack, et al.Larissa Tetsch, Ina Haneburger, Kirsten Jung, Ulrich Gerland posted to stress_response quantitative_data mathematical_model kinetics gene_expression e_coli bacteria by jjray on 2009-10-01 15:34:58 as
	Making an effort to listen: mechanical amplification in the ear. [My Copy] Neuron, Vol. 59, No. 4. (28 August 2008), pp. 530-545. by A. J. Hudspeth posted to tuning_curve review prestin mathematical_model inner_ear hopf_bifurcation frequency_selectivity electromotility dynamical_instability by phloflo on 2009-09-25 18:40:51 as along with 1 person tommcdonagh
	The mean frequency of transcriptional bursting and its variation in single cells [My Copy] Journal of Mathematical Biology, Vol. 60, No. 1. (1 January 2010), pp. 27-58. by Moxun Tang posted to transcriptional_burst transcription theory stochastic noise mathematical_model frequency by jjray on 2009-09-25 15:53:16 as
	Specificity and Completion Time Distributions of Biochemical Processes [My Copy] (14 Sep 2009) by Brian Munsky, Golan Bel, Ilya Nemenman posted to stochastic mathematical_model laplace_transform kinetic_proofreading frequency distribution biochemistry by jjray on 2009-09-15 17:32:29 as along with 1 person bertelsen
	Assessment of the Rescorla-Wagner model. [My Copy] Psychological bulletin, Vol. 117, No. 3. (May 1995), pp. 363-386. by R. R. Miller, R. C. Barnet, N. J. Grahame posted to prediction_error mathematical_psychology mathematical_model learning classical_conditioning associative_learning by flieder on 2009-09-14 11:49:27 as
	A mathematical model for simple learning. [My Copy] Psychological review, Vol. 58, No. 5. (September 1951), pp. 313-323. by R. R. BUSH, F. MOSTELLER posted to mathematical_psychology mathematical_model learning by flieder on 2009-09-14 10:55:01 as
	Noisy oscillations in the repressilator system [My Copy] (8 Sep 2009) by Byungjoon Min, K. I. Goh, I. M. Kim posted to synthetic_biology repressilator oscillation noise mathematical_model by jjray on 2009-09-09 15:33:51 as
	Probabilistic sensitivity analysis of biochemical reaction systems [My Copy] The Journal of Chemical Physics, Vol. 131, No. 9. (2009), 094101. by Hong X. Zhang, Jr, John Goutsias posted to sensitivity_analysis mathematical_model biochemistry by jjray on 2009-09-04 22:55:31 as along with 1 person bertelsen
	Investigating the two-moment characterisation of subcellular biochemical networks [My Copy] Journal of Theoretical Biology, Vol. 260, No. 3. (07 October 2009), pp. 340-352. by Mukhtar Ullah, Olaf Wolkenhauer posted to theory stochastic noise network method mathematical_model biochemistry by jjray on 2009-09-02 17:21:41 as along with 2 people tinatoni bertelsen
	Identification of an ER Fluid in Unsteady Flow with Random Electric Field and Solidification [My Copy] Journal of Intelligent Material Systems and Structures, Vol. 20, No. 2. (1 January 2009), pp. 205-215. by H. Esmonde, H. See posted to mathematical_model 09 by izwanismail on 2009-09-02 08:49:45 as along with 1 person mazlans2
	Intrinsic fluctuations in stochastic delay systems: Theoretical description and application to a simple model of gene regulation [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 2. (2009), 021909. by Tobias Galla posted to stochastic noise mathematical_model gene_regulation delay biophysics by jjray on 2009-08-31 22:05:53 as
	Predicting synchrony in heterogeneous pulse coupled oscillators [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 2. (2009), 021908. by Sachin S. Talathi, Dong U. Hwang, Abraham Miliotis, Paul R. Carney, William L. Ditto posted to physics oscillation mathematical_model by jjray on 2009-08-31 22:03:04 as
	Generalized Fluctuation-Dissipation Theorem for Steady-State Systems [My Copy] Physical Review Letters, Vol. 103, No. 9. (2009), 090601. by J. Prost, J. F. Joanny, J. M. R. Parrondo posted to steady_state physics non-equilibrium mathematical_model fluctuation-dissipation by jjray on 2009-08-31 17:57:45 as along with 3 people biblioteca_babel joshBerryman scratchmandoo
	Molecular titration and ultrasensitivity in regulatory networks. [My Copy] Journal of molecular biology, Vol. 384, No. 5. (31 December 2008), pp. 1106-1119. by Nicolas E. Buchler, Matthieu Louis posted to ultrasensitivity network mathematical_model dimerization by jjray on 2009-08-26 18:02:13 as
	Universally Sloppy Parameter Sensitivities in Systems Biology Models [My Copy] PLoS Comput Biol, Vol. 3, No. 10. (5 October 2007), e189. by Ryan N. Gutenkunst, Joshua J. Waterfall, Fergal P. Casey, Kevin S. Brown, Christopher R. Myers, James P. Sethna posted to systems_approach sensitivity mathematical_model biophysics by jjray on 2009-08-25 19:57:54 as along with 12 people and 2 groups dadiamah arne mhasoba Borelli cjryan biomcgary faisalm fishtank cjeans sobolevnrm afenley entropy Savage Lab, UCLA baker-group
	Memristive model of amoeba's learning [My Copy] (24 Oct 2008) by Yuriy V. Pershin, Steven La Fontaine, Massimiliano Di Ventra posted to oscillation memristor mathematical_model biophysics by jjray to the group biophysics on 2009-08-23 14:26:51 as along with 1 person schumach
	Robustness and epistasis in mutation-selection models [My Copy] Physical Biology, Vol. 6, No. 3. (September 2009), 036007. by Andrea Wolff, Joachim Krug posted to robustness mathematical_model evolution epistasis biophysics by jjray on 2009-08-23 14:12:56 as
	Sequential estimation for prescribed statistical accuracy in stochastic simulation of biological systems [My Copy] Mathematical Biosciences, Vol. 221, No. 1. (02 September 2009), pp. 43-53. by Werner Sandmann posted to stochastic simulation method mathematical_model mathematical_biology by jjray on 2009-08-23 14:08:48 as
	Monomeric bistability and the role of autoloops in gene regulation. [My Copy] PloS one, Vol. 4, No. 4. (2009) by Stefanie Widder, Javier Macía, Ricard Solé posted to mathematical_model gene_regulation feedback bistability by jjray on 2009-08-21 18:00:59 as
	A model for the statistical fluctuations of protein numbers in a microbial population. [My Copy] Journal of theoretical biology, Vol. 71, No. 4. (20 April 1978), pp. 587-603. by O. G. Berg posted to stochastic population mathematical_model biochemistry bacteria by jjray on 2009-08-18 18:07:18 as along with 1 person sjayanthi
	Relation of Intracellular Signal Levels and Promoter Activities in the gal Regulon of Escherichia coli [My Copy] Journal of Molecular Biology (23 June 2009) by Sandeep Krishna, László Orosz, Kim Sneppen, Sankar Adhya, Szabolcs Semsey posted to bacteria e_coli gene_regulation mathematical_model metabolism operon signaling by jjray on 2009-08-10 17:36:51 as
	Dynamics of Coupled Adaptive Elements : Bursting and Intermittent Oscillations Generated by Frustration in Networks [My Copy] (14 Jul 2009) by Masayo Inoue, Kunihiko Kaneko posted to adaptation bursting dynamical_system mathematical_model network oscillation by jjray on 2009-07-16 19:13:51 as
	Transcriptional regulation by the numbers: applications [My Copy] Current Opinion in Genetics & Development, Vol. 15, No. 2. (April 2005), pp. 125-135. by L. Bintu, N. Buchler, H. Garcia, et al.U. Gerland, T. Hwa, J. Kondev, T. Kuhlman, R. Phillips posted to gene_regulation mathematical_model promoter review shea-ackers statistical_mechanics thermodynamics by jjray on 2009-07-14 17:02:31 as along with 6 people and 1 group siebert imouthesmp dpollard madhadron dquest discreteonyxorb EisenLab
	Transcriptional regulation by the numbers: models [My Copy] Current Opinion in Genetics & Development, Vol. 15, No. 2. (April 2005), pp. 116-124. by L. Bintu, N. Buchler, H. Garcia, et al.U. Gerland, T. Hwa, J. Kondev, R. Phillips posted to gene_regulation mathematical_model promoter review shea-ackers statistical_mechanics thermodynamics by jjray on 2009-07-14 16:53:46 as along with 5 people siebert imouthesmp madhadron dquest discreteonyxorb
	Quantitative model for gene regulation by lambda phage repressor [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 79, No. 4. (February 1982), pp. 1129-1133. by G. K. Ackers, A. D. Johnson, M. A. Shea posted to gene_regulation mathematical_model promoter shea-ackers statistical_mechanics thermodynamics by jjray on 2009-07-14 16:52:13 as along with 1 person emptyhb
	Fundamental Dynamic Units: Feedforward Networks and Adjustable Gates [My Copy] (12 Jul 2009) by Herbert Sauro, Song Yang posted to feedforward gene_regulation mathematical_model promoter shea-ackers statistical_mechanics thermodynamics by jjray on 2009-07-14 16:49:11 as
	Two-Component Genetic Switch as a Synthetic Module with Tunable Stability [My Copy] Physical Review Letters, Vol. 103, No. 2. (2009), 028101. by C. M. Ghim, E. Almaas posted to gene_regulation mathematical_model stability by jjray on 2009-07-13 17:15:13 as
	Global entrainment of transcriptional systems to periodic inputs [My Copy] (30 Jun 2009) by Giovanni Russo, Mario di Bernardo, Eduardo D. Sontag posted to biophysics dynamical_system mathematical_model periodic by jjray on 2009-07-02 20:11:17 as
	Rate of fixation of beneficial mutations in sexual populations [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 79, No. 6. (2009), 061915. by Joseilme F. Gouveia, Viviane M. de Oliveira, Caio Sátiro, Paulo R. A. Campos posted to evolution mathematical_model mutation by jjray on 2009-07-01 22:13:58 as
	Compositionality, stochasticity, and cooperativity in dynamic models of gene regulation. [My Copy] HFSP journal, Vol. 2, No. 1. (February 2008), pp. 17-28. by R. Blossey, L. Cardelli, A. Phillips posted to gene_regulation mathematical_model method stochastic by jjray on 2009-06-30 16:29:45 as along with 2 people and 1 group leemond31 joseph_x_zhou bioNetwork_sysBio
	Computing generalized Langevin equations and generalized Fokker–Planck equations [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 27. (7 July 2009), pp. 10884-10889. by Eric Darve, Jose Solomon, Amirali Kia posted to fokker-planck langevin mathematical_model physics stochastic by jjray on 2009-06-22 17:13:16 as along with 2 people sobolevnrm chiufanlee
	Adiabatic coarse-graining and simulations of stochastic biochemical networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 26. (30 June 2009), pp. 10546-10551. by N. A. Sinitsyn, Nicolas Hengartner, Ilya Nemenman posted to biochemistry biophysics mathematical_model network stochastic by jjray on 2009-06-15 18:58:22 as along with 4 people cjryan sobolevnrm Scis0000002 kevinchannon

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stochastic	82
gene_regulation	56
noise	56
network	53
feedback	42
biophysics	32
evolution	32
signaling	28
biochemistry	24
bacteria	23
systems_approach	23
theory	22
robustness	19
transcription	19
biochemical_systems_theory	18
gene_expression	18
method	17
oscillation	16
review	16
mathematically_controlled_comparison	14
e_coli	13
network_motifs	12
sensitivity_analysis	12
bistability	10
dynamical_system	10
gillespie_algorithm	10
thermodynamics	10
two-component_system	9
metabolism	8
promoter	8
synthetic_biology	8
gene_network	7
physics	7
simulation	7
mathematical_biology	6
quantitative_data	6
spatial	6
temporal_response	6
transcriptional_burst	6
transcriptional_regulation	6
bacillus_subtilis	5
biology_as_engineering	5
ecology	5
eukaryote	5
growth_rate	5
hysteresis	5
immune_activation	5
information	5
langevin	5
positive_feedback	5
response_time	5
stability	5
statistical_mechanics	5
chaos	4
chemical_reaction	4
distribution	4
feedforward	4
fokker-planck	4
kinetics	4
mycobacterium_tuberculosis	4
quorum_sensing	4
shea-ackers	4
statistical_method	4
textbook	4
adaptation	3
chemotaxis	3
cooperativity	3
delay	3
design_principles	3
development	3
diffusion	3
energy	3
evolutionary_dynamics	3
frequency	3
mrna	3
neural_network	3
parameter	3
phenotypic_heterogeneity	3
power_law	3
sensitivity	3
sigma_factor	3
statistical_physics	3
t_cell	3
yeast	3
zero-order_ultrasensitivity	3
agent_based	2
computation	2
cost-benefit	2
economics	2
entropy	2
ifn-gamma	2
network_inference	2
non-equilibrium	2
phosphorylation	2
piecewise_power-law	2
population	2
rate	2
reaction-diffusion	2
synergistic_signals	2
tick-borne	2

Tag mathematical_model [at least 200 articles] Export

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